Wall clock time and date at job start Tue Mar 31 2020 18:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00303 * 2 1 4 4 H 1.48500 * 109.47357 * 274.99242 * 3 2 1 5 5 H 1.48500 * 109.46787 * 34.99311 * 3 2 1 6 6 H 1.48502 * 109.46999 * 154.99141 * 3 2 1 7 7 C 1.38817 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00155 * 187.30894 * 7 2 1 9 9 N 1.36940 * 120.00268 * 7.30876 * 7 2 1 10 10 C 1.48658 * 125.78492 * 175.55142 * 9 7 2 11 11 C 1.53064 * 103.44395 * 155.60338 * 10 9 7 12 12 H 1.09003 * 110.55161 * 284.34716 * 11 10 9 13 13 C 1.51616 * 116.68073 * 155.89333 * 11 10 9 14 14 C 1.53811 * 107.02072 * 183.73991 * 13 11 10 15 15 C 1.52519 * 111.70625 * 57.53545 * 14 13 11 16 16 H 1.08998 * 108.98753 * 185.43259 * 15 14 13 17 17 N 1.46505 * 109.04329 * 66.51702 * 15 14 13 18 18 C 1.34775 * 119.99711 * 82.84034 * 17 15 14 19 19 O 1.21277 * 120.00479 * 0.02562 * 18 17 15 20 20 C 1.50704 * 119.99701 * 180.02562 * 18 17 15 21 21 C 1.52997 * 109.47097 * 180.02562 * 20 18 17 22 22 C 1.50704 * 109.47097 * 179.97438 * 21 20 18 23 23 C 1.35354 * 126.91113 * 84.99896 * 22 21 20 24 24 N 1.33770 * 106.49466 * 179.97438 * 23 22 21 25 25 N 1.28632 * 108.88714 * 359.97438 * 24 23 22 26 26 N 1.28720 * 110.17806 * 359.76322 * 25 24 23 27 27 H 0.96997 * 125.86740 * 180.24486 * 26 25 24 28 28 C 1.53847 * 111.66368 * 305.95845 * 15 14 13 29 29 C 1.51439 * 107.04104 * 57.19465 * 28 15 14 30 30 H 1.08991 * 109.87395 * 54.19299 * 29 28 15 31 31 C 1.48245 * 125.78016 * 355.53229 * 9 7 2 32 32 H 0.96998 * 120.00056 * 359.97438 * 1 2 3 33 33 H 1.08995 * 110.62570 * 37.11924 * 10 9 7 34 34 H 1.08996 * 110.62779 * 274.09035 * 10 9 7 35 35 H 1.09005 * 109.93930 * 303.11723 * 13 11 10 36 36 H 1.08995 * 109.94166 * 64.35581 * 13 11 10 37 37 H 1.08999 * 109.03319 * 296.95806 * 14 13 11 38 38 H 1.09001 * 109.03048 * 178.10807 * 14 13 11 39 39 H 0.97004 * 119.99800 * 262.84977 * 17 15 14 40 40 H 1.08999 * 109.46908 * 300.00053 * 20 18 17 41 41 H 1.09004 * 109.47290 * 60.00238 * 20 18 17 42 42 H 1.08999 * 109.46841 * 299.99551 * 21 20 18 43 43 H 1.08994 * 109.47226 * 59.99891 * 21 20 18 44 44 H 1.07998 * 126.75251 * 359.97438 * 23 22 21 45 45 H 1.08997 * 109.93822 * 176.57905 * 28 15 14 46 46 H 1.09000 * 109.93213 * 297.72965 * 28 15 14 47 47 H 1.08995 * 110.17135 * 57.73694 * 31 9 7 48 48 H 1.08995 * 110.16869 * 295.93036 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5044 2.6198 0.8029 6 1 3.5966 1.4118 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0836 -1.2062 0.1184 9 7 1.3338 -2.3833 -0.1519 10 6 1.9518 -3.7306 -0.2646 11 6 0.8416 -4.6720 0.2088 12 1 0.7445 -4.6340 1.2938 13 6 0.9047 -6.1031 -0.2879 14 6 -0.3515 -6.8180 0.2380 15 6 -1.6294 -6.1209 -0.2171 16 1 -2.4845 -6.6031 0.2566 17 7 -1.7529 -6.2507 -1.6712 18 6 -2.2732 -7.3732 -2.2057 19 8 -2.6396 -8.2756 -1.4830 20 6 -2.3997 -7.5069 -3.7014 21 6 -3.0162 -8.8652 -4.0416 22 6 -3.1433 -8.9987 -5.5374 23 6 -2.1893 -9.4207 -6.3998 24 7 -2.7361 -9.3814 -7.6200 25 7 -3.9485 -8.9634 -7.5197 26 7 -4.2361 -8.7270 -6.2876 27 1 -5.0889 -8.4066 -5.9544 28 6 -1.6253 -4.6281 0.1549 29 6 -0.3922 -4.0166 -0.4767 30 1 -0.3793 -4.2293 -1.5456 31 6 -0.1388 -2.5348 -0.2308 32 1 -0.4850 0.8400 0.0004 33 1 2.8239 -3.8085 0.3845 34 1 2.2212 -3.9442 -1.2989 35 1 0.9124 -6.1184 -1.3778 36 1 1.7995 -6.5914 0.0981 37 1 -0.3228 -6.8319 1.3275 38 1 -0.3564 -7.8443 -0.1292 39 1 -1.4601 -5.5288 -2.2491 40 1 -3.0394 -6.7118 -4.0845 41 1 -1.4128 -7.4309 -4.1578 42 1 -2.3769 -9.6606 -3.6586 43 1 -4.0032 -8.9408 -3.5853 44 1 -1.1843 -9.7286 -6.1516 45 1 -2.5212 -4.1453 -0.2354 46 1 -1.5845 -4.5152 1.2383 47 1 -0.5337 -1.9438 -1.0571 48 1 -0.5992 -2.2253 0.7073 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734194972.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:45 Heat of formation + Delta-G solvation = 69.477526 kcal Electronic energy + Delta-G solvation = -28652.205726 eV Core-core repulsion = 24744.202088 eV Total energy + Delta-G solvation = -3908.003638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.66193 -40.49345 -38.91231 -35.82010 -34.75982 -33.53151 -33.35082 -31.71353 -31.09841 -30.22674 -28.75467 -26.45275 -25.50380 -24.88958 -23.33052 -22.17191 -22.02457 -20.95091 -20.63237 -19.89786 -19.01094 -18.61959 -17.39178 -16.76101 -16.41917 -16.07079 -15.82625 -15.00328 -14.86770 -14.64645 -14.49878 -14.16727 -13.92371 -13.70522 -13.44684 -13.29934 -12.87631 -12.62469 -12.38265 -12.17384 -12.02424 -11.92666 -11.71945 -11.50991 -11.31694 -11.19218 -11.12151 -10.94899 -10.91377 -10.82774 -10.63936 -10.06382 -10.05725 -9.97914 -9.89398 -9.55684 -9.51266 -9.44770 -9.00138 -8.61813 -6.85953 -5.74863 -3.05944 1.15488 2.19190 2.34786 2.47843 3.07623 3.38065 3.43672 3.45304 4.03919 4.26056 4.44537 4.46898 4.55051 4.72161 4.80619 4.85674 4.89599 4.98032 5.05520 5.11903 5.23998 5.31905 5.48786 5.51235 5.52417 5.59041 5.61566 5.65674 5.76758 5.78356 5.90949 6.09328 6.15102 6.19718 6.24087 6.34053 6.34354 6.43490 6.45093 6.54429 6.60604 6.77782 6.99453 7.40975 7.51073 7.56682 7.78059 8.08183 8.08391 8.19586 9.17575 9.78561 10.46481 11.37770 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015398 B = 0.002322 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.969107 B =12054.540872 C =12974.121897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.610 5.610 10 C 0.141 3.859 11 C -0.107 4.107 12 H 0.075 0.925 13 C -0.100 4.100 14 C -0.125 4.125 15 C 0.149 3.851 16 H 0.082 0.918 17 N -0.718 5.718 18 C 0.514 3.486 19 O -0.547 6.547 20 C -0.140 4.140 21 C -0.031 4.031 22 C -0.007 4.007 23 C -0.045 4.045 24 N -0.266 5.266 25 N -0.083 5.083 26 N -0.389 5.389 27 H 0.448 0.552 28 C -0.109 4.109 29 C -0.116 4.116 30 H 0.059 0.941 31 C 0.189 3.811 32 H 0.251 0.749 33 H 0.038 0.962 34 H 0.019 0.981 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.403 0.597 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.087 0.913 44 H 0.192 0.808 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.049 0.951 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.432 -17.838 -5.599 20.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.337 5.337 10 C 0.015 3.985 11 C -0.126 4.126 12 H 0.093 0.907 13 C -0.138 4.138 14 C -0.163 4.163 15 C 0.045 3.955 16 H 0.100 0.900 17 N -0.371 5.371 18 C 0.300 3.700 19 O -0.425 6.425 20 C -0.181 4.181 21 C -0.071 4.071 22 C -0.141 4.141 23 C -0.203 4.203 24 N -0.133 5.133 25 N -0.064 5.064 26 N -0.110 5.110 27 H 0.293 0.707 28 C -0.147 4.147 29 C -0.136 4.136 30 H 0.077 0.923 31 C 0.064 3.936 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.037 0.963 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.239 0.761 40 H 0.112 0.888 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.105 0.895 44 H 0.209 0.791 45 H 0.087 0.913 46 H 0.098 0.902 47 H 0.068 0.932 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.131 -18.288 -6.586 21.070 hybrid contribution 0.460 1.607 1.024 1.960 sum -7.671 -16.681 -5.562 19.184 Atomic orbital electron populations 1.69961 1.04865 1.24943 1.57163 1.24785 0.95704 0.97569 1.02478 0.86139 0.78705 0.83721 0.77479 1.21687 1.21823 1.20676 1.19080 0.91129 0.82671 1.42496 0.90503 1.45098 1.01466 1.00770 1.86337 1.21319 0.94195 0.85923 0.97060 1.22107 0.97243 0.93260 1.00036 0.90690 1.21285 0.96801 0.95427 1.00294 1.21882 0.94288 0.99129 1.01041 1.21096 0.98104 0.96685 0.79591 0.90014 1.46299 1.63204 1.18884 1.08665 1.20454 0.77038 0.82281 0.90260 1.90703 1.49595 1.39537 1.62699 1.21689 1.04201 0.98613 0.93607 1.19864 1.03907 0.98068 0.85271 1.22352 0.88401 1.06417 0.96949 1.23483 1.01759 1.06458 0.88559 1.75122 1.00438 1.14909 1.22803 1.78318 1.11451 1.17279 0.99303 1.45165 1.14182 1.45454 1.06228 0.70679 1.21571 0.98855 0.92449 1.01809 1.22114 0.93972 0.99258 0.98215 0.92319 1.20800 0.84454 0.87796 1.00515 0.93848 0.94402 0.96295 0.92176 0.92221 0.91335 0.91912 0.76117 0.88826 0.87982 0.87733 0.89489 0.79114 0.91345 0.90199 0.93250 0.94362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.42 10.41 55.49 0.58 -25.85 16 2 C -0.01 -0.26 5.48 -17.43 -0.10 -0.35 16 3 Si 0.91 21.80 29.56 -169.99 -5.02 16.78 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.23 -6.17 10.29 -15.06 -0.15 -6.32 16 8 H 0.08 2.05 7.84 -52.49 -0.41 1.63 16 9 N -0.61 -14.99 3.45 -170.42 -0.59 -15.58 16 10 C 0.14 2.75 6.90 -2.82 -0.02 2.73 16 11 C -0.11 -1.69 2.48 -89.89 -0.22 -1.91 16 12 H 0.07 1.25 8.04 -51.93 -0.42 0.84 16 13 C -0.10 -1.24 5.57 -27.01 -0.15 -1.39 16 14 C -0.12 -1.44 5.41 -26.56 -0.14 -1.58 16 15 C 0.15 1.71 2.68 -67.73 -0.18 1.52 16 16 H 0.08 0.99 7.59 -51.93 -0.39 0.59 16 17 N -0.72 -7.12 4.66 -53.61 -0.25 -7.37 16 18 C 0.51 4.94 7.69 -10.98 -0.08 4.85 16 19 O -0.55 -7.03 15.52 5.56 0.09 -6.94 16 20 C -0.14 -0.86 5.68 -27.88 -0.16 -1.02 16 21 C -0.03 -0.18 5.07 -27.88 -0.14 -0.32 16 22 C -0.01 -0.05 6.56 -82.09 -0.54 -0.59 16 23 C -0.05 -0.38 11.99 -17.74 -0.21 -0.59 16 24 N -0.27 -3.01 12.41 30.23 0.38 -2.64 16 25 N -0.08 -0.87 13.38 60.35 0.81 -0.06 16 26 N -0.39 -2.65 6.98 33.54 0.23 -2.42 16 27 H 0.45 1.47 8.96 -190.40 -1.71 -0.24 16 28 C -0.11 -1.43 5.36 -27.08 -0.15 -1.57 16 29 C -0.12 -1.86 2.25 -90.35 -0.20 -2.07 16 30 H 0.06 0.88 6.10 -51.93 -0.32 0.57 16 31 C 0.19 4.25 5.08 -3.42 -0.02 4.23 16 32 H 0.25 7.02 8.31 -40.82 -0.34 6.69 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.73 7.84 -51.93 -0.41 0.32 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.74 7.94 -51.93 -0.41 0.33 16 39 H 0.40 3.70 6.82 -40.82 -0.28 3.42 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.62 8.10 -51.93 -0.42 0.20 16 43 H 0.09 0.48 8.10 -51.93 -0.42 0.06 16 44 H 0.19 1.06 8.06 -52.49 -0.42 0.64 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.08 1.08 8.05 -51.93 -0.42 0.66 16 47 H 0.05 1.25 7.26 -51.93 -0.38 0.87 16 48 H 0.04 0.96 7.66 -51.93 -0.40 0.56 16 LS Contribution 379.84 15.07 5.72 5.72 Total: -1.00 -34.02 379.84 -9.42 -43.44 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -8.89 Total: -0.73 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.47 Total: -4.36 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 1.16 Total: -53.91 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: 0.09 Total: -6.94 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.02 -9.42 -43.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734194972.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.922 kcal (2) G-P(sol) polarization free energy of solvation -34.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds