Wall clock time and date at job start Tue Mar 31 2020 18:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00303 * 2 1 4 4 H 1.48500 * 109.47357 * 274.99242 * 3 2 1 5 5 H 1.48500 * 109.46787 * 34.99311 * 3 2 1 6 6 H 1.48502 * 109.46999 * 154.99141 * 3 2 1 7 7 C 1.38817 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00155 * 187.30894 * 7 2 1 9 9 N 1.36940 * 120.00268 * 7.30876 * 7 2 1 10 10 C 1.48658 * 125.78492 * 175.55142 * 9 7 2 11 11 C 1.53064 * 103.44395 * 155.60338 * 10 9 7 12 12 H 1.09003 * 110.55161 * 284.34716 * 11 10 9 13 13 C 1.51616 * 116.68073 * 155.89333 * 11 10 9 14 14 C 1.53811 * 107.02072 * 183.73991 * 13 11 10 15 15 C 1.52519 * 111.70625 * 57.53545 * 14 13 11 16 16 H 1.08998 * 108.98753 * 185.43259 * 15 14 13 17 17 N 1.46505 * 109.04329 * 66.51702 * 15 14 13 18 18 C 1.34775 * 119.99711 * 82.84034 * 17 15 14 19 19 O 1.21277 * 120.00479 * 0.02562 * 18 17 15 20 20 C 1.50704 * 119.99701 * 180.02562 * 18 17 15 21 21 C 1.52997 * 109.47097 * 180.02562 * 20 18 17 22 22 C 1.50704 * 109.47097 * 179.97438 * 21 20 18 23 23 C 1.35354 * 126.91113 * 84.99896 * 22 21 20 24 24 N 1.33770 * 106.49466 * 179.97438 * 23 22 21 25 25 N 1.28632 * 108.88714 * 359.97438 * 24 23 22 26 26 N 1.28720 * 110.17806 * 359.76322 * 25 24 23 27 27 H 0.96997 * 125.86740 * 180.24486 * 26 25 24 28 28 C 1.53847 * 111.66368 * 305.95845 * 15 14 13 29 29 C 1.51439 * 107.04104 * 57.19465 * 28 15 14 30 30 H 1.08991 * 109.87395 * 54.19299 * 29 28 15 31 31 C 1.48245 * 125.78016 * 355.53229 * 9 7 2 32 32 H 0.96998 * 120.00056 * 359.97438 * 1 2 3 33 33 H 1.08995 * 110.62570 * 37.11924 * 10 9 7 34 34 H 1.08996 * 110.62779 * 274.09035 * 10 9 7 35 35 H 1.09005 * 109.93930 * 303.11723 * 13 11 10 36 36 H 1.08995 * 109.94166 * 64.35581 * 13 11 10 37 37 H 1.08999 * 109.03319 * 296.95806 * 14 13 11 38 38 H 1.09001 * 109.03048 * 178.10807 * 14 13 11 39 39 H 0.97004 * 119.99800 * 262.84977 * 17 15 14 40 40 H 1.08999 * 109.46908 * 300.00053 * 20 18 17 41 41 H 1.09004 * 109.47290 * 60.00238 * 20 18 17 42 42 H 1.08999 * 109.46841 * 299.99551 * 21 20 18 43 43 H 1.08994 * 109.47226 * 59.99891 * 21 20 18 44 44 H 1.07998 * 126.75251 * 359.97438 * 23 22 21 45 45 H 1.08997 * 109.93822 * 176.57905 * 28 15 14 46 46 H 1.09000 * 109.93213 * 297.72965 * 28 15 14 47 47 H 1.08995 * 110.17135 * 57.73694 * 31 9 7 48 48 H 1.08995 * 110.16869 * 295.93036 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5044 2.6198 0.8029 6 1 3.5966 1.4118 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0836 -1.2062 0.1184 9 7 1.3338 -2.3833 -0.1519 10 6 1.9518 -3.7306 -0.2646 11 6 0.8416 -4.6720 0.2088 12 1 0.7445 -4.6340 1.2938 13 6 0.9047 -6.1031 -0.2879 14 6 -0.3515 -6.8180 0.2380 15 6 -1.6294 -6.1209 -0.2171 16 1 -2.4845 -6.6031 0.2566 17 7 -1.7529 -6.2507 -1.6712 18 6 -2.2732 -7.3732 -2.2057 19 8 -2.6396 -8.2756 -1.4830 20 6 -2.3997 -7.5069 -3.7014 21 6 -3.0162 -8.8652 -4.0416 22 6 -3.1433 -8.9987 -5.5374 23 6 -2.1893 -9.4207 -6.3998 24 7 -2.7361 -9.3814 -7.6200 25 7 -3.9485 -8.9634 -7.5197 26 7 -4.2361 -8.7270 -6.2876 27 1 -5.0889 -8.4066 -5.9544 28 6 -1.6253 -4.6281 0.1549 29 6 -0.3922 -4.0166 -0.4767 30 1 -0.3793 -4.2293 -1.5456 31 6 -0.1388 -2.5348 -0.2308 32 1 -0.4850 0.8400 0.0004 33 1 2.8239 -3.8085 0.3845 34 1 2.2212 -3.9442 -1.2989 35 1 0.9124 -6.1184 -1.3778 36 1 1.7995 -6.5914 0.0981 37 1 -0.3228 -6.8319 1.3275 38 1 -0.3564 -7.8443 -0.1292 39 1 -1.4601 -5.5288 -2.2491 40 1 -3.0394 -6.7118 -4.0845 41 1 -1.4128 -7.4309 -4.1578 42 1 -2.3769 -9.6606 -3.6586 43 1 -4.0032 -8.9408 -3.5853 44 1 -1.1843 -9.7286 -6.1516 45 1 -2.5212 -4.1453 -0.2354 46 1 -1.5845 -4.5152 1.2383 47 1 -0.5337 -1.9438 -1.0571 48 1 -0.5992 -2.2253 0.7073 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734194972.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:44 Heat of formation + Delta-G solvation = 46.079026 kcal Electronic energy + Delta-G solvation = -28653.220361 eV Core-core repulsion = 24744.202088 eV Total energy + Delta-G solvation = -3909.018273 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.27535 -41.49001 -40.01230 -37.14447 -35.38506 -34.75593 -34.13297 -33.23362 -32.27272 -31.10388 -30.10317 -27.89150 -26.91994 -25.85808 -23.97418 -23.49751 -22.78716 -21.92213 -21.59268 -21.46930 -20.08725 -19.20902 -18.78821 -18.08305 -17.10743 -16.93085 -16.78131 -16.54176 -15.80007 -15.69164 -15.52941 -15.29131 -15.08571 -14.86700 -14.46731 -14.21767 -14.09368 -13.80478 -13.44150 -13.35339 -13.23978 -12.90826 -12.80046 -12.72162 -12.64864 -12.60419 -12.34530 -12.26913 -11.91541 -11.88643 -11.76630 -11.71273 -11.58296 -11.37932 -10.96315 -10.83247 -10.79604 -10.62321 -10.12591 -9.91079 -8.86531 -7.84591 -5.16956 0.57521 1.45762 1.46999 1.54943 1.55673 1.75595 1.87918 2.34788 2.49959 3.33887 3.48928 3.57001 3.67948 3.72092 3.78850 3.88519 3.94324 4.06467 4.18017 4.21271 4.33347 4.41631 4.49296 4.52474 4.53315 4.62127 4.68380 4.72535 4.79375 4.91292 4.98477 5.05171 5.07363 5.09605 5.15646 5.16290 5.22969 5.25075 5.29188 5.43712 5.49660 5.61707 5.66598 5.76369 5.83870 5.99917 6.20052 6.65363 7.11146 7.34369 7.44636 7.78140 8.45281 9.26345 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015398 B = 0.002322 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.969107 B =12054.540872 C =12974.121897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.067 4.067 3 Si 0.973 3.027 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.239 4.239 8 H 0.079 0.921 9 N -0.635 5.635 10 C 0.135 3.865 11 C -0.093 4.093 12 H 0.064 0.936 13 C -0.089 4.089 14 C -0.119 4.119 15 C 0.159 3.841 16 H 0.081 0.919 17 N -0.717 5.717 18 C 0.516 3.484 19 O -0.579 6.579 20 C -0.133 4.133 21 C -0.023 4.023 22 C 0.009 3.991 23 C -0.055 4.055 24 N -0.305 5.305 25 N -0.115 5.115 26 N -0.375 5.375 27 H 0.462 0.538 28 C -0.101 4.101 29 C -0.101 4.101 30 H 0.075 0.925 31 C 0.197 3.803 32 H 0.245 0.755 33 H 0.037 0.963 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.408 0.592 40 H 0.109 0.891 41 H 0.118 0.882 42 H 0.106 0.894 43 H 0.091 0.909 44 H 0.214 0.786 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.012 0.988 48 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.016 -19.363 -5.817 21.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.802 3.198 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.194 1.194 7 C -0.368 4.368 8 H 0.096 0.904 9 N -0.361 5.361 10 C 0.010 3.990 11 C -0.112 4.112 12 H 0.083 0.917 13 C -0.127 4.127 14 C -0.157 4.157 15 C 0.054 3.946 16 H 0.099 0.901 17 N -0.370 5.370 18 C 0.304 3.696 19 O -0.459 6.459 20 C -0.174 4.174 21 C -0.062 4.062 22 C -0.126 4.126 23 C -0.213 4.213 24 N -0.171 5.171 25 N -0.094 5.094 26 N -0.098 5.098 27 H 0.310 0.690 28 C -0.139 4.139 29 C -0.120 4.120 30 H 0.094 0.906 31 C 0.072 3.928 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.245 0.755 40 H 0.127 0.873 41 H 0.136 0.864 42 H 0.125 0.875 43 H 0.110 0.890 44 H 0.230 0.770 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.031 0.969 48 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -7.714 -19.832 -6.828 22.348 hybrid contribution 0.359 2.092 1.158 2.418 sum -7.355 -17.740 -5.670 20.024 Atomic orbital electron populations 1.70175 1.06129 1.25073 1.58392 1.25585 0.96594 1.00740 1.03041 0.85138 0.77879 0.79612 0.77221 1.21519 1.22279 1.19412 1.19446 0.91559 0.84158 1.41619 0.90354 1.45468 1.02602 1.01991 1.86086 1.21529 0.95262 0.84518 0.97663 1.21992 0.95020 0.94809 0.99366 0.91718 1.21218 0.97952 0.92646 1.00854 1.21826 0.93500 0.99034 1.01351 1.20880 0.98237 0.94746 0.80742 0.90114 1.46266 1.63335 1.19376 1.07978 1.20940 0.75846 0.81356 0.91434 1.90699 1.50861 1.40531 1.63793 1.21684 1.05535 0.99201 0.90946 1.19824 1.04259 0.98001 0.84163 1.22447 0.87813 1.05201 0.97140 1.23971 1.03047 1.06382 0.87901 1.75081 1.01136 1.16237 1.24639 1.78260 1.11594 1.18797 1.00782 1.45199 1.14910 1.44271 1.05458 0.68976 1.21487 0.97376 0.93720 1.01299 1.21907 0.95812 0.94682 0.99617 0.90642 1.20549 0.83404 0.91674 0.97128 0.94536 0.94491 0.95257 0.91190 0.90919 0.90956 0.91412 0.75513 0.87285 0.86403 0.87533 0.89037 0.76979 0.91072 0.90753 0.96939 0.98107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.26 10.41 21.65 0.23 -56.03 16 2 C -0.07 -3.76 5.48 84.86 0.46 -3.30 16 3 Si 0.97 45.48 29.56 68.60 2.03 47.50 16 4 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 5 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.24 -13.25 10.29 84.03 0.86 -12.39 16 8 H 0.08 4.20 7.84 -2.91 -0.02 4.17 16 9 N -0.63 -31.68 3.45 -693.07 -2.39 -34.07 16 10 C 0.13 5.15 6.90 85.98 0.59 5.74 16 11 C -0.09 -2.77 2.48 -10.32 -0.03 -2.80 16 12 H 0.06 2.09 8.04 -2.39 -0.02 2.07 16 13 C -0.09 -1.92 5.57 30.41 0.17 -1.75 16 14 C -0.12 -2.36 5.41 30.71 0.17 -2.19 16 15 C 0.16 3.23 2.68 45.12 0.12 3.35 16 16 H 0.08 1.75 7.59 -2.39 -0.02 1.73 16 17 N -0.72 -12.06 4.66 -441.93 -2.06 -14.12 16 18 C 0.52 8.30 7.69 87.66 0.67 8.97 16 19 O -0.58 -13.26 15.52 -3.02 -0.05 -13.30 16 20 C -0.13 -1.16 5.68 29.85 0.17 -0.99 16 21 C -0.02 -0.19 5.07 29.85 0.15 -0.04 16 22 C 0.01 0.10 6.56 41.36 0.27 0.37 16 23 C -0.06 -0.81 11.99 83.73 1.00 0.20 16 24 N -0.30 -6.68 12.41 -58.26 -0.72 -7.41 16 25 N -0.11 -2.30 13.38 37.02 0.50 -1.81 16 26 N -0.38 -4.47 6.98 -47.79 -0.33 -4.80 16 27 H 0.46 2.16 8.96 -219.96 -1.97 0.19 16 28 C -0.10 -2.51 5.36 30.37 0.16 -2.35 16 29 C -0.10 -3.15 2.25 -10.62 -0.02 -3.17 16 30 H 0.08 2.12 6.10 -2.39 -0.01 2.11 16 31 C 0.20 9.14 5.08 85.82 0.44 9.58 16 32 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 33 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.42 7.84 -2.38 -0.02 1.40 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 38 H 0.07 1.36 7.94 -2.39 -0.02 1.34 16 39 H 0.41 6.18 6.82 -92.70 -0.63 5.55 16 40 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.11 0.94 8.10 -2.39 -0.02 0.92 16 43 H 0.09 0.74 8.10 -2.39 -0.02 0.72 16 44 H 0.21 1.86 8.06 -2.91 -0.02 1.83 16 45 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.07 1.96 8.05 -2.39 -0.02 1.94 16 47 H 0.01 0.65 7.26 -2.39 -0.02 0.64 16 48 H 0.00 0.04 7.66 -2.39 -0.02 0.02 16 Total: -1.00 -76.18 379.84 0.77 -75.41 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -1.62 Total: 9.39 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 5.20 Total: -0.77 kcal Atomic # 7 Polarization: -113.45 SS G_CDS: -4.79 Total: -118.23 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.05 Total: -13.30 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -76.18 0.77 -75.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734194972.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.492 kcal (2) G-P(sol) polarization free energy of solvation -76.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds