Wall clock time and date at job start Tue Mar 31 2020 18:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 119.99887 * 2 1 4 4 H 1.48497 * 109.46836 * 239.99956 * 3 2 1 5 5 H 1.48503 * 109.46637 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47066 * 119.99684 * 3 2 1 7 7 C 1.38811 * 120.00431 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00068 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99673 * 0.02562 * 7 2 1 10 10 C 1.48661 * 125.78824 * 359.97438 * 9 7 2 11 11 C 1.53060 * 103.44838 * 155.66015 * 10 9 7 12 12 H 1.09003 * 110.55356 * 283.27352 * 11 10 9 13 13 C 1.51610 * 116.68033 * 155.89397 * 11 10 9 14 14 C 1.53814 * 107.02050 * 183.72965 * 13 11 10 15 15 C 1.52526 * 111.70169 * 57.53335 * 14 13 11 16 16 H 1.09001 * 109.04466 * 66.44691 * 15 14 13 17 17 N 1.46497 * 109.04258 * 185.39735 * 15 14 13 18 18 C 1.34774 * 120.00267 * 276.04169 * 17 15 14 19 19 O 1.21281 * 119.99741 * 0.02562 * 18 17 15 20 20 C 1.50704 * 119.99905 * 179.97438 * 18 17 15 21 21 C 1.53005 * 109.46661 * 180.02562 * 20 18 17 22 22 C 1.50704 * 109.46661 * 180.02562 * 21 20 18 23 23 C 1.35349 * 126.90864 * 85.00009 * 22 21 20 24 24 N 1.33776 * 106.49589 * 179.73311 * 23 22 21 25 25 N 1.28634 * 108.88224 * 0.26432 * 24 23 22 26 26 N 1.28722 * 110.18245 * 359.97438 * 25 24 23 27 27 H 0.96991 * 125.87088 * 180.02562 * 26 25 24 28 28 C 1.53849 * 111.60916 * 305.92515 * 15 14 13 29 29 C 1.51441 * 107.04213 * 57.30017 * 28 15 14 30 30 H 1.08997 * 110.27497 * 54.27618 * 29 28 15 31 31 C 1.48244 * 125.78344 * 180.02562 * 9 7 2 32 32 H 0.96997 * 120.00123 * 0.02562 * 1 2 3 33 33 H 1.09006 * 110.62219 * 37.16980 * 10 9 7 34 34 H 1.09002 * 110.62735 * 274.15165 * 10 9 7 35 35 H 1.09001 * 109.94948 * 64.35151 * 13 11 10 36 36 H 1.09001 * 109.94485 * 303.10753 * 13 11 10 37 37 H 1.08998 * 109.03642 * 296.96395 * 14 13 11 38 38 H 1.08999 * 109.03788 * 178.10483 * 14 13 11 39 39 H 0.97006 * 119.99803 * 96.04426 * 17 15 14 40 40 H 1.08991 * 109.47024 * 60.00245 * 20 18 17 41 41 H 1.09000 * 109.47190 * 299.99682 * 20 18 17 42 42 H 1.08996 * 109.47378 * 59.99723 * 21 20 18 43 43 H 1.09006 * 109.47036 * 299.99623 * 21 20 18 44 44 H 1.08002 * 126.75754 * 0.02562 * 23 22 21 45 45 H 1.09001 * 109.93746 * 176.61401 * 28 15 14 46 46 H 1.08997 * 109.93808 * 297.85033 * 28 15 14 47 47 H 1.09008 * 110.16750 * 295.87622 * 31 9 7 48 48 H 1.09001 * 110.17503 * 57.67435 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0016 10 6 -0.1534 -2.5379 -0.0017 11 6 -0.3707 -3.9227 -0.6165 12 1 -0.2346 -3.8872 -1.6974 13 6 -1.6673 -4.6266 -0.2674 14 6 -1.6126 -6.0196 -0.9175 15 6 -0.3977 -6.8136 -0.4484 16 1 -0.5064 -7.0361 0.6131 17 7 -0.3313 -8.0718 -1.1959 18 6 -1.0528 -9.1354 -0.7903 19 8 -1.7574 -9.0508 0.1933 20 6 -0.9849 -10.4295 -1.5596 21 6 -1.8917 -11.4667 -0.8938 22 6 -1.8233 -12.7610 -1.6627 23 6 -0.9028 -13.7431 -1.5208 24 7 -1.2303 -14.7000 -2.3964 25 7 -2.2805 -14.3322 -3.0417 26 7 -2.6681 -13.1738 -2.6357 27 1 -3.4361 -12.6830 -2.9674 28 6 0.9090 -6.0311 -0.6658 29 6 0.7704 -4.7199 0.0793 30 1 0.5122 -4.9036 1.1222 31 6 1.9337 -3.7400 -0.0017 32 1 -0.4850 0.8400 -0.0004 33 1 -0.6174 -1.7673 -0.6174 34 1 -0.5429 -2.5041 1.0158 35 1 -2.5136 -4.0649 -0.6627 36 1 -1.7576 -4.7245 0.8145 37 1 -1.5658 -5.9049 -2.0004 38 1 -2.5178 -6.5687 -0.6583 39 1 0.2320 -8.1393 -1.9827 40 1 0.0419 -10.7949 -1.5660 41 1 -1.3172 -10.2612 -2.5839 42 1 -2.9184 -11.1010 -0.8876 43 1 -1.5598 -11.6352 0.1307 44 1 -0.0706 -13.7544 -0.8325 45 1 1.7515 -6.5965 -0.2676 46 1 1.0563 -5.8418 -1.7291 47 1 2.4959 -3.8991 -0.9220 48 1 2.5862 -3.8588 0.8633 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734194973.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:48 Heat of formation + Delta-G solvation = 68.173340 kcal Electronic energy + Delta-G solvation = -28055.610836 eV Core-core repulsion = 24147.550644 eV Total energy + Delta-G solvation = -3908.060192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.74825 -40.37033 -38.98237 -35.89025 -34.84846 -33.66869 -33.56193 -31.90395 -30.95841 -30.20357 -28.73114 -26.44312 -25.54931 -24.66099 -23.41103 -22.21114 -22.07111 -20.99815 -20.51924 -19.78063 -19.39154 -18.72618 -17.41985 -16.74379 -16.53348 -16.08550 -15.99861 -14.98627 -14.87714 -14.74096 -14.43663 -14.34729 -13.86899 -13.74408 -13.68696 -13.28672 -12.86093 -12.51953 -12.30064 -12.20608 -12.08335 -11.90715 -11.81173 -11.67138 -11.36069 -11.28074 -11.03642 -10.96286 -10.86835 -10.68409 -10.54386 -10.23676 -10.08584 -9.92340 -9.88944 -9.63033 -9.59353 -9.30727 -9.05306 -8.65384 -6.83065 -5.64427 -3.05362 1.06806 2.10290 2.26320 2.37369 2.92890 3.40212 3.44394 3.45726 3.94142 4.17031 4.33387 4.45095 4.48155 4.62649 4.73470 4.77295 4.85763 4.96108 4.98889 5.15159 5.29909 5.34886 5.42005 5.44090 5.49368 5.59655 5.63049 5.64448 5.68119 5.74886 6.01355 6.10849 6.13594 6.20821 6.24516 6.34943 6.35733 6.40801 6.53630 6.60769 6.66426 6.83848 7.02376 7.28061 7.54261 7.61569 7.86029 7.98054 7.99573 8.33722 9.20815 9.82114 10.48895 11.39985 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.043473 B = 0.001762 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.928506 B =15886.621725 C =16170.569391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.913 3.087 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.221 4.221 8 H 0.076 0.924 9 N -0.608 5.608 10 C 0.163 3.837 11 C -0.116 4.116 12 H 0.069 0.931 13 C -0.099 4.099 14 C -0.123 4.123 15 C 0.148 3.852 16 H 0.085 0.915 17 N -0.725 5.725 18 C 0.512 3.488 19 O -0.540 6.540 20 C -0.138 4.138 21 C -0.033 4.033 22 C -0.007 4.007 23 C -0.046 4.046 24 N -0.266 5.266 25 N -0.083 5.083 26 N -0.389 5.389 27 H 0.448 0.552 28 C -0.106 4.106 29 C -0.104 4.104 30 H 0.071 0.929 31 C 0.145 3.855 32 H 0.252 0.748 33 H 0.104 0.896 34 H 0.013 0.987 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.400 0.600 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.105 0.895 44 H 0.192 0.808 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.022 0.978 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.444 -22.904 -4.873 23.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.350 4.350 8 H 0.094 0.906 9 N -0.334 5.334 10 C 0.038 3.962 11 C -0.135 4.135 12 H 0.087 0.913 13 C -0.138 4.138 14 C -0.162 4.162 15 C 0.044 3.956 16 H 0.103 0.897 17 N -0.375 5.375 18 C 0.298 3.702 19 O -0.417 6.417 20 C -0.179 4.179 21 C -0.073 4.073 22 C -0.141 4.141 23 C -0.203 4.203 24 N -0.133 5.133 25 N -0.063 5.063 26 N -0.110 5.110 27 H 0.294 0.706 28 C -0.144 4.144 29 C -0.123 4.123 30 H 0.089 0.911 31 C 0.019 3.981 32 H 0.062 0.938 33 H 0.122 0.878 34 H 0.031 0.969 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.233 0.767 40 H 0.119 0.881 41 H 0.111 0.889 42 H 0.106 0.894 43 H 0.124 0.876 44 H 0.209 0.791 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.040 0.960 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.145 -23.881 -5.086 24.952 hybrid contribution 0.513 2.029 0.145 2.098 sum -4.631 -21.852 -4.942 22.877 Atomic orbital electron populations 1.69800 1.04849 1.24810 1.57700 1.24770 0.95724 0.97619 1.02659 0.86169 0.78403 0.83171 0.77852 1.21236 1.21594 1.21265 1.19042 0.90442 0.82559 1.42930 0.90621 1.45117 1.01712 0.99503 1.87107 1.21649 0.84436 0.92070 0.98005 1.22387 0.93229 0.98175 0.99749 0.91295 1.21253 0.98261 0.93790 1.00447 1.21887 0.97365 0.96425 1.00516 1.21132 0.95482 0.82085 0.96886 0.89652 1.46213 1.47338 1.12198 1.31743 1.20487 0.79652 0.85069 0.85008 1.90737 1.39881 1.84198 1.26878 1.21679 1.02799 0.92981 1.00448 1.19882 1.01867 0.86907 0.98632 1.22349 0.94785 1.00702 0.96272 1.23487 1.02527 0.91443 1.02851 1.75130 1.06661 1.24720 1.06766 1.78324 1.10309 0.96918 1.20763 1.45174 1.24034 1.15305 1.26509 0.70643 1.21530 0.95495 0.96223 1.01145 1.21700 0.98190 0.93223 0.99199 0.91101 1.20951 0.93468 0.85948 0.97720 0.93751 0.87844 0.96912 0.91640 0.91862 0.92293 0.92134 0.76652 0.88053 0.88888 0.89378 0.87647 0.79107 0.91679 0.91304 0.96047 0.95810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.73 10.11 55.49 0.56 -26.17 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 3 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.22 -6.14 10.30 -15.06 -0.16 -6.29 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.61 -15.36 3.45 -170.41 -0.59 -15.95 16 10 C 0.16 3.84 5.52 -2.82 -0.02 3.83 16 11 C -0.12 -2.05 2.47 -89.90 -0.22 -2.28 16 12 H 0.07 1.25 8.06 -51.93 -0.42 0.83 16 13 C -0.10 -1.46 5.71 -27.01 -0.15 -1.62 16 14 C -0.12 -1.51 5.36 -26.55 -0.14 -1.65 16 15 C 0.15 1.67 2.44 -67.73 -0.16 1.51 16 16 H 0.09 1.13 7.55 -51.93 -0.39 0.74 16 17 N -0.72 -6.02 5.05 -53.61 -0.27 -6.29 16 18 C 0.51 4.42 7.77 -10.98 -0.09 4.33 16 19 O -0.54 -6.84 15.63 5.56 0.09 -6.76 16 20 C -0.14 -0.64 5.68 -27.88 -0.16 -0.80 16 21 C -0.03 -0.16 5.07 -27.88 -0.14 -0.30 16 22 C -0.01 -0.04 6.56 -82.09 -0.54 -0.58 16 23 C -0.05 -0.33 11.99 -17.73 -0.21 -0.54 16 24 N -0.27 -2.73 12.41 30.24 0.38 -2.35 16 25 N -0.08 -0.78 13.38 60.35 0.81 0.03 16 26 N -0.39 -2.26 6.98 33.54 0.23 -2.02 16 27 H 0.45 1.05 8.96 -190.40 -1.71 -0.66 16 28 C -0.11 -1.27 5.15 -27.08 -0.14 -1.41 16 29 C -0.10 -1.69 2.30 -90.36 -0.21 -1.89 16 30 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16 31 C 0.14 2.91 6.98 -3.43 -0.02 2.89 16 32 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.10 2.77 5.93 -51.93 -0.31 2.46 16 34 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.96 7.99 -51.93 -0.41 0.54 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.40 2.28 8.60 -40.82 -0.35 1.93 16 40 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.09 0.43 8.10 -51.93 -0.42 0.01 16 43 H 0.11 0.55 8.10 -51.93 -0.42 0.13 16 44 H 0.19 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.07 0.79 8.06 -51.93 -0.42 0.38 16 47 H 0.02 0.42 8.08 -51.92 -0.42 0.00 16 48 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 383.37 15.07 5.78 5.78 Total: -1.00 -34.75 383.37 -9.53 -44.28 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -9.03 Total: -2.23 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -2.46 Total: -5.24 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 1.12 Total: -52.76 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: 0.09 Total: -6.76 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.75 -9.53 -44.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734194973.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.457 kcal (2) G-P(sol) polarization free energy of solvation -34.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds