Wall clock time and date at job start Tue Mar 31 2020 18:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 119.99887 * 2 1 4 4 H 1.48497 * 109.46836 * 239.99956 * 3 2 1 5 5 H 1.48503 * 109.46637 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47066 * 119.99684 * 3 2 1 7 7 C 1.38811 * 120.00431 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00068 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99673 * 0.02562 * 7 2 1 10 10 C 1.48661 * 125.78824 * 359.97438 * 9 7 2 11 11 C 1.53060 * 103.44838 * 155.66015 * 10 9 7 12 12 H 1.09003 * 110.55356 * 283.27352 * 11 10 9 13 13 C 1.51610 * 116.68033 * 155.89397 * 11 10 9 14 14 C 1.53814 * 107.02050 * 183.72965 * 13 11 10 15 15 C 1.52526 * 111.70169 * 57.53335 * 14 13 11 16 16 H 1.09001 * 109.04466 * 66.44691 * 15 14 13 17 17 N 1.46497 * 109.04258 * 185.39735 * 15 14 13 18 18 C 1.34774 * 120.00267 * 276.04169 * 17 15 14 19 19 O 1.21281 * 119.99741 * 0.02562 * 18 17 15 20 20 C 1.50704 * 119.99905 * 179.97438 * 18 17 15 21 21 C 1.53005 * 109.46661 * 180.02562 * 20 18 17 22 22 C 1.50704 * 109.46661 * 180.02562 * 21 20 18 23 23 C 1.35349 * 126.90864 * 85.00009 * 22 21 20 24 24 N 1.33776 * 106.49589 * 179.73311 * 23 22 21 25 25 N 1.28634 * 108.88224 * 0.26432 * 24 23 22 26 26 N 1.28722 * 110.18245 * 359.97438 * 25 24 23 27 27 H 0.96991 * 125.87088 * 180.02562 * 26 25 24 28 28 C 1.53849 * 111.60916 * 305.92515 * 15 14 13 29 29 C 1.51441 * 107.04213 * 57.30017 * 28 15 14 30 30 H 1.08997 * 110.27497 * 54.27618 * 29 28 15 31 31 C 1.48244 * 125.78344 * 180.02562 * 9 7 2 32 32 H 0.96997 * 120.00123 * 0.02562 * 1 2 3 33 33 H 1.09006 * 110.62219 * 37.16980 * 10 9 7 34 34 H 1.09002 * 110.62735 * 274.15165 * 10 9 7 35 35 H 1.09001 * 109.94948 * 64.35151 * 13 11 10 36 36 H 1.09001 * 109.94485 * 303.10753 * 13 11 10 37 37 H 1.08998 * 109.03642 * 296.96395 * 14 13 11 38 38 H 1.08999 * 109.03788 * 178.10483 * 14 13 11 39 39 H 0.97006 * 119.99803 * 96.04426 * 17 15 14 40 40 H 1.08991 * 109.47024 * 60.00245 * 20 18 17 41 41 H 1.09000 * 109.47190 * 299.99682 * 20 18 17 42 42 H 1.08996 * 109.47378 * 59.99723 * 21 20 18 43 43 H 1.09006 * 109.47036 * 299.99623 * 21 20 18 44 44 H 1.08002 * 126.75754 * 0.02562 * 23 22 21 45 45 H 1.09001 * 109.93746 * 176.61401 * 28 15 14 46 46 H 1.08997 * 109.93808 * 297.85033 * 28 15 14 47 47 H 1.09008 * 110.16750 * 295.87622 * 31 9 7 48 48 H 1.09001 * 110.17503 * 57.67435 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0016 10 6 -0.1534 -2.5379 -0.0017 11 6 -0.3707 -3.9227 -0.6165 12 1 -0.2346 -3.8872 -1.6974 13 6 -1.6673 -4.6266 -0.2674 14 6 -1.6126 -6.0196 -0.9175 15 6 -0.3977 -6.8136 -0.4484 16 1 -0.5064 -7.0361 0.6131 17 7 -0.3313 -8.0718 -1.1959 18 6 -1.0528 -9.1354 -0.7903 19 8 -1.7574 -9.0508 0.1933 20 6 -0.9849 -10.4295 -1.5596 21 6 -1.8917 -11.4667 -0.8938 22 6 -1.8233 -12.7610 -1.6627 23 6 -0.9028 -13.7431 -1.5208 24 7 -1.2303 -14.7000 -2.3964 25 7 -2.2805 -14.3322 -3.0417 26 7 -2.6681 -13.1738 -2.6357 27 1 -3.4361 -12.6830 -2.9674 28 6 0.9090 -6.0311 -0.6658 29 6 0.7704 -4.7199 0.0793 30 1 0.5122 -4.9036 1.1222 31 6 1.9337 -3.7400 -0.0017 32 1 -0.4850 0.8400 -0.0004 33 1 -0.6174 -1.7673 -0.6174 34 1 -0.5429 -2.5041 1.0158 35 1 -2.5136 -4.0649 -0.6627 36 1 -1.7576 -4.7245 0.8145 37 1 -1.5658 -5.9049 -2.0004 38 1 -2.5178 -6.5687 -0.6583 39 1 0.2320 -8.1393 -1.9827 40 1 0.0419 -10.7949 -1.5660 41 1 -1.3172 -10.2612 -2.5839 42 1 -2.9184 -11.1010 -0.8876 43 1 -1.5598 -11.6352 0.1307 44 1 -0.0706 -13.7544 -0.8325 45 1 1.7515 -6.5965 -0.2676 46 1 1.0563 -5.8418 -1.7291 47 1 2.4959 -3.8991 -0.9220 48 1 2.5862 -3.8588 0.8633 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734194973.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:47 Heat of formation + Delta-G solvation = 43.568661 kcal Electronic energy + Delta-G solvation = -28056.677775 eV Core-core repulsion = 24147.550644 eV Total energy + Delta-G solvation = -3909.127131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.27272 -41.29672 -40.13875 -37.15233 -35.39376 -34.97933 -34.12859 -33.51942 -32.08464 -31.08633 -30.13972 -27.82576 -26.93213 -25.67609 -23.96672 -23.54740 -22.77639 -21.88252 -21.58051 -21.26646 -20.61682 -19.21475 -18.78233 -18.05612 -17.15062 -16.91692 -16.76962 -16.58300 -15.90176 -15.66168 -15.54218 -15.27882 -15.20234 -14.86136 -14.42377 -14.27652 -14.09346 -13.55897 -13.49227 -13.41130 -13.26487 -13.05104 -12.88200 -12.73380 -12.70633 -12.62872 -12.27289 -12.11290 -11.95536 -11.76522 -11.72596 -11.68211 -11.57992 -11.46481 -11.18347 -10.85322 -10.76235 -10.66693 -10.12489 -9.95349 -8.86751 -7.75403 -5.19093 0.57783 1.46375 1.49613 1.55103 1.55947 1.74209 1.87602 2.27079 2.50774 3.34201 3.47472 3.59877 3.66621 3.71463 3.74329 3.91918 3.96449 4.06951 4.15340 4.21779 4.34505 4.39244 4.47853 4.51645 4.54409 4.59712 4.67925 4.73061 4.75007 4.80581 4.98010 5.03514 5.05516 5.09295 5.10302 5.18547 5.23791 5.24529 5.30080 5.40993 5.47815 5.58199 5.61119 5.76408 5.85310 6.00206 6.30677 6.67290 7.10653 7.37154 7.45041 7.78198 8.44944 9.26705 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.043473 B = 0.001762 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.928506 B =15886.621725 C =16170.569391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.070 4.070 3 Si 0.979 3.021 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.280 1.280 7 C -0.238 4.238 8 H 0.080 0.920 9 N -0.633 5.633 10 C 0.165 3.835 11 C -0.102 4.102 12 H 0.071 0.929 13 C -0.095 4.095 14 C -0.112 4.112 15 C 0.156 3.844 16 H 0.067 0.933 17 N -0.714 5.714 18 C 0.512 3.488 19 O -0.583 6.583 20 C -0.127 4.127 21 C -0.026 4.026 22 C 0.010 3.990 23 C -0.055 4.055 24 N -0.305 5.305 25 N -0.114 5.114 26 N -0.375 5.375 27 H 0.462 0.538 28 C -0.093 4.093 29 C -0.090 4.090 30 H 0.063 0.937 31 C 0.139 3.861 32 H 0.246 0.754 33 H 0.067 0.933 34 H -0.018 1.018 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.417 0.583 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.214 0.786 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.033 0.967 48 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.486 -24.499 -6.012 25.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.263 4.263 3 Si 0.808 3.192 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.206 1.206 7 C -0.367 4.367 8 H 0.098 0.902 9 N -0.359 5.359 10 C 0.041 3.959 11 C -0.121 4.121 12 H 0.089 0.911 13 C -0.133 4.133 14 C -0.151 4.151 15 C 0.051 3.949 16 H 0.085 0.915 17 N -0.366 5.366 18 C 0.300 3.700 19 O -0.463 6.463 20 C -0.168 4.168 21 C -0.066 4.066 22 C -0.125 4.125 23 C -0.213 4.213 24 N -0.171 5.171 25 N -0.094 5.094 26 N -0.098 5.098 27 H 0.310 0.690 28 C -0.131 4.131 29 C -0.109 4.109 30 H 0.081 0.919 31 C 0.014 3.986 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.000 1.000 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.254 0.746 40 H 0.141 0.859 41 H 0.133 0.867 42 H 0.107 0.893 43 H 0.121 0.879 44 H 0.230 0.770 45 H 0.104 0.896 46 H 0.102 0.898 47 H 0.051 0.949 48 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -4.168 -25.523 -6.274 26.611 hybrid contribution 0.218 2.577 0.568 2.648 sum -3.949 -22.946 -5.705 23.972 Atomic orbital electron populations 1.70074 1.06199 1.24955 1.58770 1.25628 0.96641 1.00944 1.03042 0.85137 0.77104 0.78835 0.78168 1.20156 1.22048 1.20613 1.19448 0.91011 0.83960 1.42287 0.90190 1.45479 1.02578 1.00872 1.87007 1.21413 0.83813 0.94767 0.95956 1.22155 0.95691 0.94978 0.99303 0.91112 1.21202 0.96528 0.95337 1.00278 1.21769 0.97980 0.94402 1.00955 1.20792 0.94492 0.83223 0.96358 0.91480 1.46019 1.47601 1.10980 1.31969 1.21124 0.78457 0.85972 0.84464 1.90735 1.41682 1.84946 1.28933 1.21659 1.04102 0.90390 1.00607 1.19840 1.02112 0.86347 0.98333 1.22410 0.93986 1.00527 0.95592 1.23971 1.03496 0.91095 1.02712 1.75092 1.07522 1.26333 1.08123 1.78268 1.10881 0.98383 1.21858 1.45204 1.24166 1.14489 1.25958 0.68963 1.21428 0.96623 0.93699 1.01349 1.21595 0.95441 0.94497 0.99375 0.91883 1.21155 0.94826 0.84581 0.98011 0.94475 0.91464 1.00004 0.91785 0.92692 0.90907 0.92183 0.74641 0.85877 0.86697 0.89304 0.87876 0.76962 0.89645 0.89836 0.94861 0.95901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.11 10.11 21.65 0.22 -56.89 16 2 C -0.07 -4.01 5.49 84.86 0.47 -3.55 16 3 Si 0.98 45.78 29.55 68.60 2.03 47.81 16 4 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 6 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.24 -13.42 10.30 84.03 0.87 -12.55 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 9 N -0.63 -32.62 3.45 -693.05 -2.39 -35.02 16 10 C 0.17 8.12 5.52 85.98 0.48 8.59 16 11 C -0.10 -3.59 2.47 -10.33 -0.03 -3.61 16 12 H 0.07 2.49 8.06 -2.39 -0.02 2.47 16 13 C -0.09 -2.75 5.71 30.41 0.17 -2.58 16 14 C -0.11 -2.50 5.36 30.71 0.16 -2.33 16 15 C 0.16 3.09 2.44 45.12 0.11 3.20 16 16 H 0.07 1.64 7.55 -2.39 -0.02 1.62 16 17 N -0.71 -9.10 5.05 -441.92 -2.23 -11.33 16 18 C 0.51 7.11 7.77 87.66 0.68 7.79 16 19 O -0.58 -13.53 15.63 -3.03 -0.05 -13.58 16 20 C -0.13 -0.65 5.68 29.85 0.17 -0.48 16 21 C -0.03 -0.17 5.07 29.85 0.15 -0.02 16 22 C 0.01 0.09 6.56 41.36 0.27 0.36 16 23 C -0.05 -0.68 11.99 83.73 1.00 0.33 16 24 N -0.30 -5.96 12.41 -58.25 -0.72 -6.68 16 25 N -0.11 -2.03 13.38 37.02 0.50 -1.54 16 26 N -0.37 -3.61 6.98 -47.79 -0.33 -3.95 16 27 H 0.46 1.17 8.96 -219.96 -1.97 -0.80 16 28 C -0.09 -1.92 5.15 30.37 0.16 -1.76 16 29 C -0.09 -2.80 2.30 -10.62 -0.02 -2.83 16 30 H 0.06 2.08 7.93 -2.39 -0.02 2.06 16 31 C 0.14 5.49 6.98 85.82 0.60 6.09 16 32 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 33 H 0.07 3.80 5.93 -2.38 -0.01 3.78 16 34 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 35 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16 36 H 0.05 1.68 7.99 -2.39 -0.02 1.66 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.42 2.71 8.60 -92.70 -0.80 1.91 16 40 H 0.12 0.19 8.14 -2.39 -0.02 0.18 16 41 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.09 0.62 8.10 -2.39 -0.02 0.61 16 43 H 0.10 0.81 8.10 -2.38 -0.02 0.79 16 44 H 0.21 1.35 8.06 -2.91 -0.02 1.33 16 45 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 46 H 0.08 1.56 8.06 -2.39 -0.02 1.54 16 47 H 0.03 1.25 8.08 -2.38 -0.02 1.23 16 48 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -79.28 383.37 0.47 -78.81 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -1.79 Total: 5.71 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 5.24 Total: -3.35 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -4.96 Total: -115.41 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.05 Total: -13.58 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -79.28 0.47 -78.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734194973.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.378 kcal (2) G-P(sol) polarization free energy of solvation -79.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds