Wall clock time and date at job start Tue Mar 31 2020 18:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99841 * 2 1 4 4 H 1.48504 * 109.47076 * 270.00320 * 3 2 1 5 5 H 1.48497 * 109.47246 * 30.00592 * 3 2 1 6 6 H 1.48497 * 109.47076 * 150.00568 * 3 2 1 7 7 C 1.38806 * 119.99775 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99746 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00375 * 359.97438 * 7 2 1 10 10 C 1.47429 * 125.72260 * 359.96272 * 9 7 2 11 11 C 1.53378 * 106.50967 * 180.70921 * 10 9 7 12 12 H 1.09004 * 108.15352 * 268.37067 * 11 10 9 13 13 C 1.50895 * 113.07362 * 147.52502 * 11 10 9 14 14 C 1.52834 * 111.56651 * 294.17583 * 13 11 10 15 15 C 1.53298 * 108.21774 * 300.94657 * 14 13 11 16 16 H 1.08993 * 109.63206 * 303.88265 * 15 14 13 17 17 N 1.46506 * 109.62886 * 183.48799 * 15 14 13 18 18 C 1.34771 * 119.99635 * 85.00604 * 17 15 14 19 19 O 1.21284 * 120.00644 * 359.97438 * 18 17 15 20 20 C 1.50706 * 119.99767 * 180.02562 * 18 17 15 21 21 C 1.53005 * 109.46830 * 179.97438 * 20 18 17 22 22 C 1.50706 * 109.46794 * 179.97438 * 21 20 18 23 23 C 1.35341 * 126.91250 * 274.68489 * 22 21 20 24 24 N 1.33773 * 106.49602 * 179.90532 * 23 22 21 25 25 N 1.28630 * 108.88639 * 0.36553 * 24 23 22 26 26 N 1.28721 * 110.17656 * 359.77037 * 25 24 23 27 27 H 0.96999 * 125.86620 * 179.97438 * 26 25 24 28 28 C 1.52625 * 108.50960 * 63.78630 * 15 14 13 29 29 C 1.52986 * 110.92584 * 297.79794 * 28 15 14 30 30 H 1.09003 * 112.98845 * 286.17411 * 29 28 15 31 31 C 1.47620 * 125.72750 * 179.97438 * 9 7 2 32 32 H 0.97011 * 119.99811 * 359.97438 * 1 2 3 33 33 H 1.08993 * 110.04819 * 61.44661 * 10 9 7 34 34 H 1.09002 * 110.04720 * 299.97013 * 10 9 7 35 35 H 1.09007 * 109.06140 * 173.63796 * 13 11 10 36 36 H 1.09003 * 109.00749 * 54.67572 * 13 11 10 37 37 H 1.09003 * 109.71534 * 181.27133 * 14 13 11 38 38 H 1.08999 * 109.75308 * 60.65402 * 14 13 11 39 39 H 0.97000 * 119.99818 * 265.00331 * 17 15 14 40 40 H 1.08999 * 109.46712 * 299.99201 * 20 18 17 41 41 H 1.08994 * 109.47068 * 59.99956 * 20 18 17 42 42 H 1.08999 * 109.46918 * 299.99194 * 21 20 18 43 43 H 1.08999 * 109.47653 * 60.00040 * 21 20 18 44 44 H 1.07998 * 126.75286 * 0.03747 * 23 22 21 45 45 H 1.09002 * 109.18470 * 58.16762 * 28 15 14 46 46 H 1.08996 * 109.18436 * 177.42396 * 28 15 14 47 47 H 1.09001 * 110.43290 * 36.34658 * 31 9 7 48 48 H 1.09001 * 110.54274 * 273.88941 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1414 -2.5351 0.0008 11 6 -0.4284 -4.0417 0.0184 12 1 -0.5206 -4.3820 -1.0130 13 6 -1.6898 -4.3947 0.7677 14 6 -1.5647 -4.0800 2.2580 15 6 -0.3845 -4.8813 2.8196 16 1 -0.5319 -5.9418 2.6158 17 7 -0.2876 -4.6667 4.2656 18 6 -1.0268 -5.4144 5.1087 19 8 -1.7725 -6.2646 4.6705 20 6 -0.9276 -5.1933 6.5962 21 6 -1.8629 -6.1644 7.3196 22 6 -1.7632 -5.9438 8.8070 23 6 -0.8543 -6.4866 9.6502 24 7 -1.1388 -6.0160 10.8696 25 7 -2.1611 -5.2396 10.7882 26 7 -2.5680 -5.1677 9.5691 27 1 -3.3222 -4.6468 9.2515 28 6 0.8952 -4.3979 2.1427 29 6 0.8450 -4.6514 0.6348 30 1 0.9745 -5.7021 0.3752 31 6 1.9324 -3.7338 -0.0016 32 1 -0.4850 0.8402 0.0004 33 1 -0.5629 -2.0849 -0.8979 34 1 -0.5634 -2.0639 0.8885 35 1 -1.8912 -5.4588 0.6442 36 1 -2.5208 -3.8247 0.3521 37 1 -2.4818 -4.3668 2.7727 38 1 -1.3840 -3.0139 2.3955 39 1 0.3085 -3.9865 4.6161 40 1 0.0983 -5.3661 6.9215 41 1 -1.2157 -4.1688 6.8312 42 1 -2.8886 -5.9912 6.9942 43 1 -1.5752 -7.1892 7.0846 44 1 -0.0550 -7.1646 9.3894 45 1 1.0139 -3.3294 2.3225 46 1 1.7473 -4.9287 2.5670 47 1 2.8392 -3.7427 0.6031 48 1 2.1519 -4.0535 -1.0203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734194974.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:51 Heat of formation + Delta-G solvation = 64.724694 kcal Electronic energy + Delta-G solvation = -28687.940975 eV Core-core repulsion = 24779.731239 eV Total energy + Delta-G solvation = -3908.209737 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.65677 -40.22249 -38.96627 -35.62122 -34.71383 -33.54823 -33.45556 -31.93670 -30.83084 -29.96748 -28.77084 -26.28266 -25.34426 -24.80575 -23.32103 -22.27726 -22.12044 -21.30509 -20.55631 -19.78966 -18.64739 -18.24159 -17.10982 -16.85458 -16.42831 -15.99224 -15.85635 -15.22524 -14.77344 -14.64831 -14.56620 -13.99825 -13.87319 -13.64046 -13.46730 -13.25862 -12.72324 -12.44434 -12.23244 -12.12883 -12.05742 -11.71662 -11.70404 -11.33101 -11.20160 -11.18495 -11.08583 -10.94357 -10.88043 -10.65092 -10.57780 -10.13831 -10.03521 -9.81904 -9.72247 -9.62690 -9.46801 -9.42860 -8.90008 -8.61290 -6.83998 -5.74147 -3.06919 1.16345 2.19281 2.36007 2.53705 3.12115 3.36220 3.41812 3.43161 4.05750 4.27732 4.46867 4.47054 4.56091 4.79483 4.85683 4.96007 5.06718 5.07413 5.13848 5.28519 5.45431 5.49052 5.52955 5.55032 5.58469 5.61715 5.72204 5.77004 5.84811 5.89173 5.93836 6.05434 6.28686 6.33567 6.43269 6.44474 6.49506 6.56998 6.63212 6.65758 6.72307 6.84234 6.99632 7.48940 7.55468 7.63265 7.82574 8.08516 8.15388 8.22674 9.19230 9.79853 10.47296 11.37314 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014628 B = 0.002400 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.656934 B =11662.529299 C =12716.901031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.186 3.814 11 C -0.114 4.114 12 H 0.058 0.942 13 C -0.095 4.095 14 C -0.125 4.125 15 C 0.148 3.852 16 H 0.083 0.917 17 N -0.721 5.721 18 C 0.513 3.487 19 O -0.545 6.545 20 C -0.139 4.139 21 C -0.032 4.032 22 C -0.006 4.006 23 C -0.047 4.047 24 N -0.266 5.266 25 N -0.083 5.083 26 N -0.389 5.389 27 H 0.448 0.552 28 C -0.113 4.113 29 C -0.093 4.093 30 H 0.075 0.925 31 C 0.136 3.864 32 H 0.251 0.749 33 H 0.039 0.961 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.401 0.599 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.192 0.808 45 H 0.086 0.914 46 H 0.055 0.945 47 H 0.039 0.961 48 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.987 -12.524 12.349 18.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.354 4.354 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.062 3.938 11 C -0.133 4.133 12 H 0.076 0.924 13 C -0.133 4.133 14 C -0.163 4.163 15 C 0.044 3.956 16 H 0.101 0.899 17 N -0.370 5.370 18 C 0.299 3.701 19 O -0.423 6.423 20 C -0.180 4.180 21 C -0.072 4.072 22 C -0.140 4.140 23 C -0.204 4.204 24 N -0.133 5.133 25 N -0.064 5.064 26 N -0.110 5.110 27 H 0.294 0.706 28 C -0.151 4.151 29 C -0.113 4.113 30 H 0.093 0.907 31 C 0.010 3.990 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.235 0.765 40 H 0.119 0.881 41 H 0.112 0.888 42 H 0.106 0.894 43 H 0.123 0.877 44 H 0.209 0.791 45 H 0.104 0.896 46 H 0.074 0.926 47 H 0.057 0.943 48 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -4.673 -12.490 13.563 19.020 hybrid contribution 0.463 1.381 -1.284 1.941 sum -4.210 -11.109 12.279 17.085 Atomic orbital electron populations 1.69967 1.04791 1.24881 1.57240 1.24771 0.95692 0.97527 1.02491 0.86165 0.78572 0.83708 0.77589 1.21679 1.21762 1.20774 1.19045 0.90368 0.82485 1.43530 0.90601 1.44601 1.01713 0.99751 1.87103 1.21060 0.84183 0.87717 1.00870 1.21675 0.93333 1.00057 0.98265 0.92357 1.20809 0.97880 1.00276 0.94342 1.21916 0.97337 1.01076 0.95988 1.21038 0.96457 1.00287 0.77813 0.89915 1.46185 1.44632 1.38768 1.07455 1.20437 0.80064 0.81185 0.88423 1.90711 1.38555 1.34098 1.78912 1.21685 1.02520 1.01504 0.92315 1.19879 1.01569 1.01666 0.84098 1.22364 0.95744 0.99017 0.96880 1.23469 1.02749 1.05265 0.88886 1.75116 1.07710 1.08095 1.22426 1.78315 1.10027 1.17898 1.00125 1.45175 1.25284 1.33876 1.06680 0.70624 1.21697 0.95019 1.03279 0.95128 1.22226 0.97142 0.98037 0.93870 0.90663 1.21847 0.94284 0.86317 0.96565 0.93862 0.94320 0.93295 0.92809 0.91919 0.92423 0.90730 0.76508 0.88108 0.88830 0.89407 0.87715 0.79136 0.89563 0.92597 0.94302 0.96560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.12 10.34 55.49 0.57 -25.55 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.53 29.55 -169.99 -5.02 16.50 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.23 -6.04 10.29 -15.06 -0.15 -6.19 16 8 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.61 -14.57 2.93 -169.56 -0.50 -15.07 16 10 C 0.19 4.24 4.35 -3.34 -0.01 4.23 16 11 C -0.11 -2.00 2.69 -90.93 -0.24 -2.25 16 12 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 13 C -0.09 -1.44 5.35 -27.87 -0.15 -1.59 16 14 C -0.12 -1.85 5.41 -26.66 -0.14 -2.00 16 15 C 0.15 1.98 2.43 -67.97 -0.17 1.82 16 16 H 0.08 1.18 7.60 -51.93 -0.39 0.79 16 17 N -0.72 -7.89 5.09 -53.84 -0.27 -8.16 16 18 C 0.51 5.40 7.80 -10.98 -0.09 5.31 16 19 O -0.54 -7.63 15.66 5.55 0.09 -7.55 16 20 C -0.14 -0.90 5.68 -27.88 -0.16 -1.06 16 21 C -0.03 -0.20 5.07 -27.88 -0.14 -0.34 16 22 C -0.01 -0.04 6.56 -82.09 -0.54 -0.58 16 23 C -0.05 -0.38 11.99 -17.74 -0.21 -0.60 16 24 N -0.27 -3.02 12.41 30.23 0.38 -2.64 16 25 N -0.08 -0.88 13.38 60.35 0.81 -0.07 16 26 N -0.39 -2.75 6.98 33.54 0.23 -2.52 16 27 H 0.45 1.65 8.96 -190.40 -1.71 -0.06 16 28 C -0.11 -1.66 4.28 -26.93 -0.12 -1.78 16 29 C -0.09 -1.49 3.72 -88.55 -0.33 -1.82 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 31 C 0.14 2.65 6.50 -1.90 -0.01 2.64 16 32 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.04 1.01 7.50 -51.93 -0.39 0.62 16 34 H 0.05 1.21 5.78 -51.93 -0.30 0.91 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.27 6.75 -51.93 -0.35 0.92 16 39 H 0.40 3.70 8.60 -40.82 -0.35 3.35 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.54 8.10 -51.93 -0.42 0.12 16 43 H 0.10 0.66 8.10 -51.93 -0.42 0.24 16 44 H 0.19 1.04 8.06 -52.49 -0.42 0.61 16 45 H 0.09 1.53 7.17 -51.93 -0.37 1.16 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.04 0.73 7.98 -51.93 -0.41 0.32 16 48 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 379.29 15.07 5.72 5.72 Total: -1.00 -33.50 379.29 -9.46 -42.96 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.89 Total: 0.92 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -2.56 Total: -4.54 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 1.22 Total: -54.01 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: 0.09 Total: -7.55 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.50 -9.46 -42.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734194974.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.682 kcal (2) G-P(sol) polarization free energy of solvation -33.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds