Wall clock time and date at job start Tue Mar 31 2020 18:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99841 * 2 1 4 4 H 1.48504 * 109.47076 * 270.00320 * 3 2 1 5 5 H 1.48497 * 109.47246 * 30.00592 * 3 2 1 6 6 H 1.48497 * 109.47076 * 150.00568 * 3 2 1 7 7 C 1.38806 * 119.99775 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99746 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00375 * 359.97438 * 7 2 1 10 10 C 1.47429 * 125.72260 * 359.96272 * 9 7 2 11 11 C 1.53378 * 106.50967 * 180.70921 * 10 9 7 12 12 H 1.09004 * 108.15352 * 268.37067 * 11 10 9 13 13 C 1.50895 * 113.07362 * 147.52502 * 11 10 9 14 14 C 1.52834 * 111.56651 * 294.17583 * 13 11 10 15 15 C 1.53298 * 108.21774 * 300.94657 * 14 13 11 16 16 H 1.08993 * 109.63206 * 303.88265 * 15 14 13 17 17 N 1.46506 * 109.62886 * 183.48799 * 15 14 13 18 18 C 1.34771 * 119.99635 * 85.00604 * 17 15 14 19 19 O 1.21284 * 120.00644 * 359.97438 * 18 17 15 20 20 C 1.50706 * 119.99767 * 180.02562 * 18 17 15 21 21 C 1.53005 * 109.46830 * 179.97438 * 20 18 17 22 22 C 1.50706 * 109.46794 * 179.97438 * 21 20 18 23 23 C 1.35341 * 126.91250 * 274.68489 * 22 21 20 24 24 N 1.33773 * 106.49602 * 179.90532 * 23 22 21 25 25 N 1.28630 * 108.88639 * 0.36553 * 24 23 22 26 26 N 1.28721 * 110.17656 * 359.77037 * 25 24 23 27 27 H 0.96999 * 125.86620 * 179.97438 * 26 25 24 28 28 C 1.52625 * 108.50960 * 63.78630 * 15 14 13 29 29 C 1.52986 * 110.92584 * 297.79794 * 28 15 14 30 30 H 1.09003 * 112.98845 * 286.17411 * 29 28 15 31 31 C 1.47620 * 125.72750 * 179.97438 * 9 7 2 32 32 H 0.97011 * 119.99811 * 359.97438 * 1 2 3 33 33 H 1.08993 * 110.04819 * 61.44661 * 10 9 7 34 34 H 1.09002 * 110.04720 * 299.97013 * 10 9 7 35 35 H 1.09007 * 109.06140 * 173.63796 * 13 11 10 36 36 H 1.09003 * 109.00749 * 54.67572 * 13 11 10 37 37 H 1.09003 * 109.71534 * 181.27133 * 14 13 11 38 38 H 1.08999 * 109.75308 * 60.65402 * 14 13 11 39 39 H 0.97000 * 119.99818 * 265.00331 * 17 15 14 40 40 H 1.08999 * 109.46712 * 299.99201 * 20 18 17 41 41 H 1.08994 * 109.47068 * 59.99956 * 20 18 17 42 42 H 1.08999 * 109.46918 * 299.99194 * 21 20 18 43 43 H 1.08999 * 109.47653 * 60.00040 * 21 20 18 44 44 H 1.07998 * 126.75286 * 0.03747 * 23 22 21 45 45 H 1.09002 * 109.18470 * 58.16762 * 28 15 14 46 46 H 1.08996 * 109.18436 * 177.42396 * 28 15 14 47 47 H 1.09001 * 110.43290 * 36.34658 * 31 9 7 48 48 H 1.09001 * 110.54274 * 273.88941 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1414 -2.5351 0.0008 11 6 -0.4284 -4.0417 0.0184 12 1 -0.5206 -4.3820 -1.0130 13 6 -1.6898 -4.3947 0.7677 14 6 -1.5647 -4.0800 2.2580 15 6 -0.3845 -4.8813 2.8196 16 1 -0.5319 -5.9418 2.6158 17 7 -0.2876 -4.6667 4.2656 18 6 -1.0268 -5.4144 5.1087 19 8 -1.7725 -6.2646 4.6705 20 6 -0.9276 -5.1933 6.5962 21 6 -1.8629 -6.1644 7.3196 22 6 -1.7632 -5.9438 8.8070 23 6 -0.8543 -6.4866 9.6502 24 7 -1.1388 -6.0160 10.8696 25 7 -2.1611 -5.2396 10.7882 26 7 -2.5680 -5.1677 9.5691 27 1 -3.3222 -4.6468 9.2515 28 6 0.8952 -4.3979 2.1427 29 6 0.8450 -4.6514 0.6348 30 1 0.9745 -5.7021 0.3752 31 6 1.9324 -3.7338 -0.0016 32 1 -0.4850 0.8402 0.0004 33 1 -0.5629 -2.0849 -0.8979 34 1 -0.5634 -2.0639 0.8885 35 1 -1.8912 -5.4588 0.6442 36 1 -2.5208 -3.8247 0.3521 37 1 -2.4818 -4.3668 2.7727 38 1 -1.3840 -3.0139 2.3955 39 1 0.3085 -3.9865 4.6161 40 1 0.0983 -5.3661 6.9215 41 1 -1.2157 -4.1688 6.8312 42 1 -2.8886 -5.9912 6.9942 43 1 -1.5752 -7.1892 7.0846 44 1 -0.0550 -7.1646 9.3894 45 1 1.0139 -3.3294 2.3225 46 1 1.7473 -4.9287 2.5670 47 1 2.8392 -3.7427 0.6031 48 1 2.1519 -4.0535 -1.0203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734194974.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:50 Heat of formation + Delta-G solvation = 41.655465 kcal Electronic energy + Delta-G solvation = -28688.941332 eV Core-core repulsion = 24779.731239 eV Total energy + Delta-G solvation = -3909.210093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.28428 -41.32004 -40.16690 -36.91350 -35.39108 -34.94007 -34.13796 -33.56552 -31.95410 -31.05355 -30.16988 -27.73618 -26.82394 -25.89657 -23.98026 -23.67353 -22.97134 -22.31230 -21.79278 -21.02654 -19.60812 -19.20912 -18.81797 -17.94065 -17.21073 -16.90892 -16.70133 -16.58007 -16.42141 -15.68964 -15.41850 -15.33003 -14.96931 -14.82153 -14.48599 -14.31437 -13.84458 -13.79828 -13.52687 -13.35606 -13.19987 -12.94119 -12.75075 -12.73505 -12.64344 -12.59902 -12.29251 -12.17834 -12.02693 -11.78261 -11.74640 -11.65561 -11.58990 -11.29527 -11.08793 -10.96394 -10.74483 -10.61994 -10.13333 -9.91574 -8.82068 -7.81190 -5.14910 0.56565 1.46009 1.47176 1.54288 1.55461 1.73099 1.86556 2.30444 2.51210 3.37090 3.47129 3.62190 3.70665 3.80685 3.87568 3.92259 3.99643 4.06371 4.18848 4.23066 4.32087 4.34419 4.38979 4.51859 4.59597 4.61886 4.65690 4.67418 4.75857 4.91262 5.00651 5.03823 5.08108 5.09417 5.12592 5.21335 5.23526 5.29855 5.33126 5.40861 5.54598 5.63596 5.67461 5.76813 5.91060 5.98182 6.24212 6.65528 7.14491 7.33340 7.43793 7.82888 8.48734 9.28750 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014628 B = 0.002400 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.656934 B =11662.529299 C =12716.901031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.066 4.066 3 Si 0.972 3.028 4 H -0.291 1.291 5 H -0.297 1.297 6 H -0.268 1.268 7 C -0.234 4.234 8 H 0.080 0.920 9 N -0.624 5.624 10 C 0.199 3.801 11 C -0.104 4.104 12 H 0.061 0.939 13 C -0.091 4.091 14 C -0.118 4.118 15 C 0.159 3.841 16 H 0.087 0.913 17 N -0.719 5.719 18 C 0.514 3.486 19 O -0.579 6.579 20 C -0.130 4.130 21 C -0.024 4.024 22 C 0.009 3.991 23 C -0.053 4.053 24 N -0.304 5.304 25 N -0.114 5.114 26 N -0.376 5.376 27 H 0.461 0.539 28 C -0.104 4.104 29 C -0.078 4.078 30 H 0.113 0.887 31 C 0.129 3.871 32 H 0.243 0.757 33 H -0.009 1.009 34 H 0.021 0.979 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.045 0.955 39 H 0.410 0.590 40 H 0.122 0.878 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.108 0.892 44 H 0.215 0.785 45 H 0.051 0.949 46 H 0.079 0.921 47 H 0.047 0.953 48 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.048 -14.327 13.062 19.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.801 3.199 4 H -0.219 1.219 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.363 4.363 8 H 0.098 0.902 9 N -0.351 5.351 10 C 0.074 3.926 11 C -0.123 4.123 12 H 0.079 0.921 13 C -0.129 4.129 14 C -0.156 4.156 15 C 0.054 3.946 16 H 0.105 0.895 17 N -0.369 5.369 18 C 0.302 3.698 19 O -0.459 6.459 20 C -0.171 4.171 21 C -0.064 4.064 22 C -0.126 4.126 23 C -0.211 4.211 24 N -0.170 5.170 25 N -0.094 5.094 26 N -0.099 5.099 27 H 0.310 0.690 28 C -0.142 4.142 29 C -0.098 4.098 30 H 0.131 0.869 31 C 0.004 3.996 32 H 0.053 0.947 33 H 0.009 0.991 34 H 0.039 0.961 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.246 0.754 40 H 0.140 0.860 41 H 0.126 0.874 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.232 0.768 45 H 0.070 0.930 46 H 0.098 0.902 47 H 0.066 0.934 48 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -3.713 -14.296 14.302 20.560 hybrid contribution 0.182 1.924 -1.588 2.501 sum -3.531 -12.373 12.714 18.089 Atomic orbital electron populations 1.70194 1.06129 1.24871 1.58692 1.25552 0.96510 1.00675 1.03185 0.85172 0.77799 0.79703 0.77239 1.21852 1.22322 1.19269 1.19422 0.90879 0.83817 1.42212 0.90174 1.44881 1.02453 1.00948 1.86787 1.20759 0.83541 0.91099 0.97215 1.21556 0.95421 0.96070 0.99280 0.92073 1.20785 0.96261 1.01683 0.94213 1.21815 0.98356 0.99507 0.95955 1.20756 0.94761 0.99784 0.79262 0.89529 1.46125 1.45074 1.39221 1.06512 1.21036 0.78866 0.80093 0.89777 1.90701 1.39875 1.35530 1.79773 1.21673 1.03939 1.02340 0.89121 1.19830 1.01633 1.01768 0.83133 1.22433 0.95027 0.98185 0.96991 1.23975 1.03566 1.05451 0.88134 1.75079 1.08543 1.09176 1.24220 1.78263 1.10686 1.18931 1.01526 1.45217 1.25359 1.33401 1.05964 0.69030 1.21553 0.96711 1.01380 0.94519 1.22260 0.94159 0.99037 0.94328 0.86934 1.22065 0.95611 0.84810 0.97137 0.94718 0.99065 0.96102 0.90096 0.92765 0.92100 0.93668 0.75441 0.85977 0.87437 0.89287 0.87390 0.76799 0.93017 0.90231 0.93444 0.96366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.14 10.34 21.65 0.22 -55.92 16 2 C -0.07 -3.70 5.49 84.86 0.47 -3.23 16 3 Si 0.97 45.01 29.55 68.60 2.03 47.04 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.23 -12.70 10.29 84.03 0.86 -11.84 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.62 -30.55 2.93 -690.37 -2.02 -32.57 16 10 C 0.20 9.40 4.35 86.33 0.38 9.77 16 11 C -0.10 -3.58 2.69 -10.99 -0.03 -3.61 16 12 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 13 C -0.09 -2.68 5.35 29.85 0.16 -2.52 16 14 C -0.12 -3.40 5.41 30.64 0.17 -3.24 16 15 C 0.16 3.92 2.43 44.97 0.11 4.03 16 16 H 0.09 2.17 7.60 -2.39 -0.02 2.15 16 17 N -0.72 -14.04 5.09 -442.64 -2.26 -16.29 16 18 C 0.51 9.41 7.80 87.66 0.68 10.10 16 19 O -0.58 -14.76 15.66 -3.04 -0.05 -14.81 16 20 C -0.13 -1.26 5.68 29.85 0.17 -1.09 16 21 C -0.02 -0.22 5.07 29.85 0.15 -0.07 16 22 C 0.01 0.10 6.56 41.36 0.27 0.37 16 23 C -0.05 -0.78 11.99 83.73 1.00 0.23 16 24 N -0.30 -6.63 12.41 -58.26 -0.72 -7.35 16 25 N -0.11 -2.32 13.38 37.02 0.50 -1.83 16 26 N -0.38 -4.72 6.98 -47.79 -0.33 -5.06 16 27 H 0.46 2.63 8.96 -219.96 -1.97 0.66 16 28 C -0.10 -2.82 4.28 30.47 0.13 -2.69 16 29 C -0.08 -2.32 3.72 -9.45 -0.04 -2.36 16 30 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 31 C 0.13 4.85 6.50 87.16 0.57 5.42 16 32 H 0.24 14.14 8.31 -92.70 -0.77 13.36 16 33 H -0.01 -0.50 7.50 -2.39 -0.02 -0.52 16 34 H 0.02 1.09 5.78 -2.39 -0.01 1.08 16 35 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.04 1.57 6.75 -2.39 -0.02 1.56 16 39 H 0.41 6.65 8.60 -92.71 -0.80 5.85 16 40 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.09 0.87 8.10 -2.39 -0.02 0.85 16 43 H 0.11 1.03 8.10 -2.39 -0.02 1.01 16 44 H 0.22 1.77 8.06 -2.91 -0.02 1.74 16 45 H 0.05 1.81 7.17 -2.39 -0.02 1.79 16 46 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.05 1.70 7.98 -2.39 -0.02 1.68 16 48 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -75.68 379.29 0.64 -75.05 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -1.78 Total: 12.48 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 5.05 Total: -0.74 kcal Atomic # 7 Polarization: -114.41 SS G_CDS: -4.61 Total: -119.02 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.05 Total: -14.81 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -75.68 0.64 -75.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734194974.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.701 kcal (2) G-P(sol) polarization free energy of solvation -75.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds