Wall clock time and date at job start Tue Mar 31 2020 18:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 119.99944 * 2 1 4 4 H 1.48493 * 109.47327 * 240.00057 * 3 2 1 5 5 H 1.48496 * 109.46945 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46892 * 120.00196 * 3 2 1 7 7 C 1.38817 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99742 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00135 * 0.02562 * 7 2 1 10 10 C 1.47172 * 125.64403 * 0.02562 * 9 7 2 11 11 C 1.55350 * 106.95903 * 180.92856 * 10 9 7 12 12 H 1.09001 * 112.90919 * 214.96402 * 11 10 9 13 13 C 1.53007 * 106.41348 * 91.60872 * 11 10 9 14 14 C 1.52687 * 111.07939 * 197.21067 * 13 11 10 15 15 C 1.53330 * 108.36130 * 62.31631 * 14 13 11 16 16 H 1.09002 * 109.73745 * 55.57483 * 15 14 13 17 17 N 1.46504 * 109.74094 * 176.22991 * 15 14 13 18 18 C 1.34777 * 119.99569 * 274.34169 * 17 15 14 19 19 O 1.21280 * 120.00102 * 0.02562 * 18 17 15 20 20 C 1.50700 * 119.99815 * 179.97438 * 18 17 15 21 21 C 1.52994 * 109.47145 * 180.02562 * 20 18 17 22 22 C 1.50700 * 109.46924 * 180.02562 * 21 20 18 23 23 C 1.35352 * 126.91165 * 274.67847 * 22 21 20 24 24 N 1.33779 * 106.49912 * 179.90780 * 23 22 21 25 25 N 1.28638 * 108.87835 * 0.36903 * 24 23 22 26 26 N 1.28713 * 110.18105 * 359.77073 * 25 24 23 27 27 H 0.97002 * 125.86342 * 179.97438 * 26 25 24 28 28 C 1.52819 * 108.13259 * 295.90202 * 15 14 13 29 29 C 1.50737 * 111.74475 * 58.94155 * 28 15 14 30 30 H 1.09008 * 109.27005 * 186.23164 * 29 28 15 31 31 C 1.47816 * 125.65065 * 179.97438 * 9 7 2 32 32 H 0.97002 * 120.00025 * 359.97438 * 1 2 3 33 33 H 1.08994 * 109.96043 * 61.55967 * 10 9 7 34 34 H 1.08996 * 109.96714 * 300.30571 * 10 9 7 35 35 H 1.09001 * 109.15987 * 317.61005 * 13 11 10 36 36 H 1.08999 * 109.16497 * 76.85683 * 13 11 10 37 37 H 1.09006 * 109.65948 * 302.62363 * 14 13 11 38 38 H 1.08998 * 109.74800 * 182.05708 * 14 13 11 39 39 H 0.96993 * 120.00020 * 94.34110 * 17 15 14 40 40 H 1.09002 * 109.47214 * 300.00690 * 20 18 17 41 41 H 1.09001 * 109.46780 * 59.99869 * 20 18 17 42 42 H 1.08993 * 109.47303 * 300.00207 * 21 20 18 43 43 H 1.09001 * 109.47219 * 60.00577 * 21 20 18 44 44 H 1.07994 * 126.75299 * 0.04925 * 23 22 21 45 45 H 1.09002 * 109.03063 * 179.52678 * 28 15 14 46 46 H 1.09007 * 109.02820 * 298.44059 * 28 15 14 47 47 H 1.08999 * 110.51229 * 84.73523 * 31 9 7 48 48 H 1.09003 * 110.50546 * 322.02605 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1390 -2.5329 -0.0028 11 6 -0.4438 -4.0560 0.0204 12 1 -1.3325 -4.3196 -0.5531 13 6 -0.5725 -4.4488 1.4935 14 6 -0.4502 -5.9603 1.6716 15 6 0.9454 -6.3903 1.2040 16 1 1.7049 -5.8262 1.7452 17 7 1.1282 -7.8238 1.4454 18 6 1.5568 -8.2553 2.6481 19 8 1.7907 -7.4570 3.5307 20 6 1.7444 -9.7298 2.8966 21 6 2.2333 -9.9473 4.3299 22 6 2.4214 -11.4217 4.5781 23 6 1.4751 -12.3079 4.9668 24 7 2.0829 -13.4958 5.0615 25 7 3.3251 -13.3530 4.7594 26 7 3.5717 -12.1250 4.4631 27 1 4.4341 -11.7654 4.2024 28 6 1.0558 -6.1008 -0.2924 29 6 0.8410 -4.6400 -0.5958 30 1 0.8180 -4.4966 -1.6762 31 6 1.9351 -3.7348 -0.0028 32 1 -0.4850 0.8401 0.0004 33 1 -0.5566 -2.0835 -0.9037 34 1 -0.5609 -2.0554 0.8815 35 1 0.2144 -3.9567 2.0651 36 1 -1.5432 -4.1229 1.8673 37 1 -1.2092 -6.4628 1.0719 38 1 -0.5812 -6.2192 2.7222 39 1 0.9408 -8.4622 0.7396 40 1 0.7948 -10.2458 2.7547 41 1 2.4808 -10.1253 2.1971 42 1 3.1827 -9.4312 4.4722 43 1 1.4965 -9.5519 5.0291 44 1 0.4335 -12.0978 5.1601 45 1 2.0469 -6.3937 -0.6389 46 1 0.3061 -6.6869 -0.8241 47 1 2.1779 -4.0450 1.0135 48 1 2.8257 -3.7502 -0.6310 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734194975.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:55 Heat of formation + Delta-G solvation = 65.130998 kcal Electronic energy + Delta-G solvation = -28404.006097 eV Core-core repulsion = 24495.813979 eV Total energy + Delta-G solvation = -3908.192118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.71771 -40.32227 -39.00300 -35.75401 -34.79391 -33.59070 -33.44420 -31.68294 -31.04162 -30.23178 -28.87361 -26.31526 -25.46921 -24.52396 -23.37873 -22.25424 -22.17157 -21.50758 -20.55362 -19.91932 -18.71405 -18.33425 -17.29655 -16.68907 -16.57246 -16.31027 -15.99404 -14.92584 -14.81488 -14.75142 -14.35209 -14.06353 -13.85498 -13.72027 -13.55587 -13.32286 -12.81166 -12.58385 -12.41777 -12.18379 -12.08040 -11.80584 -11.68260 -11.60277 -11.24935 -11.13420 -11.02998 -11.00380 -10.97053 -10.67616 -10.56749 -10.14069 -10.01878 -9.90584 -9.66250 -9.59722 -9.54189 -9.42179 -9.01974 -8.57293 -6.79218 -5.68705 -3.01534 1.10078 2.13209 2.29517 2.45340 2.99643 3.41499 3.45767 3.46909 3.98624 4.21236 4.38190 4.49395 4.51612 4.69291 4.77391 4.86462 4.90002 4.99831 5.03826 5.25856 5.37796 5.43510 5.46921 5.49449 5.53142 5.57713 5.69940 5.71394 5.77919 5.80272 5.92215 6.04883 6.14429 6.22515 6.33302 6.38219 6.41531 6.45699 6.53405 6.62965 6.79298 6.92312 7.01198 7.35429 7.58391 7.64739 7.85233 8.02432 8.06701 8.28107 9.24758 9.84932 10.51872 11.42840 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.026904 B = 0.001978 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.471103 B =14150.583587 C =14537.995454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.226 4.226 8 H 0.076 0.924 9 N -0.606 5.606 10 C 0.184 3.816 11 C -0.113 4.113 12 H 0.073 0.927 13 C -0.104 4.104 14 C -0.123 4.123 15 C 0.143 3.857 16 H 0.095 0.905 17 N -0.724 5.724 18 C 0.511 3.489 19 O -0.536 6.536 20 C -0.137 4.137 21 C -0.034 4.034 22 C -0.006 4.006 23 C -0.046 4.046 24 N -0.266 5.266 25 N -0.084 5.084 26 N -0.389 5.389 27 H 0.448 0.552 28 C -0.106 4.106 29 C -0.094 4.094 30 H 0.071 0.929 31 C 0.139 3.861 32 H 0.252 0.748 33 H 0.038 0.962 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.397 0.603 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.106 0.894 44 H 0.192 0.808 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.020 0.980 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.359 -22.934 3.578 23.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.059 3.941 11 C -0.132 4.132 12 H 0.091 0.909 13 C -0.143 4.143 14 C -0.161 4.161 15 C 0.039 3.961 16 H 0.113 0.887 17 N -0.374 5.374 18 C 0.297 3.703 19 O -0.412 6.412 20 C -0.178 4.178 21 C -0.074 4.074 22 C -0.140 4.140 23 C -0.204 4.204 24 N -0.133 5.133 25 N -0.064 5.064 26 N -0.110 5.110 27 H 0.294 0.706 28 C -0.145 4.145 29 C -0.114 4.114 30 H 0.089 0.911 31 C 0.013 3.987 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.231 0.769 40 H 0.119 0.881 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.124 0.876 44 H 0.209 0.791 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.038 0.962 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.947 -23.601 4.413 24.088 hybrid contribution 0.437 1.925 -0.744 2.109 sum 2.384 -21.676 3.669 22.113 Atomic orbital electron populations 1.69944 1.04827 1.25046 1.57229 1.24788 0.95720 0.97597 1.02449 0.86212 0.78451 0.83326 0.77853 1.21261 1.21635 1.21221 1.19012 0.90370 0.82510 1.43598 0.90621 1.44548 1.01651 0.99780 1.87235 1.21447 0.84261 0.87489 1.00892 1.22463 0.96231 0.99669 0.94815 0.90909 1.21479 1.02172 0.93557 0.97046 1.21905 0.95896 0.97564 1.00780 1.21133 0.98561 0.79590 0.96800 0.88715 1.46153 1.68014 1.09141 1.14135 1.20467 0.76826 0.90553 0.82503 1.90761 1.50295 1.56739 1.43438 1.21669 1.04259 0.94126 0.97765 1.19889 1.04710 0.85991 0.96793 1.22358 0.86873 0.97569 1.07201 1.23483 1.01651 0.88808 1.06412 1.75128 0.98732 1.23355 1.16101 1.78316 1.12116 0.98715 1.17233 1.45173 1.11960 1.07456 1.46437 0.70634 1.21131 1.01618 0.97520 0.94202 1.21367 0.97353 0.92144 1.00505 0.91053 1.21491 0.94120 0.86219 0.96867 0.93770 0.94388 0.93317 0.91186 0.92274 0.92303 0.92139 0.76922 0.88133 0.88956 0.89332 0.87602 0.79118 0.91886 0.91971 0.96235 0.94683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.07 10.32 55.49 0.57 -26.50 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.23 -6.32 10.28 -15.06 -0.15 -6.47 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.61 -15.25 3.41 -169.63 -0.58 -15.83 16 10 C 0.18 4.35 4.66 -2.43 -0.01 4.34 16 11 C -0.11 -1.97 3.61 -88.85 -0.32 -2.29 16 12 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 13 C -0.10 -1.70 4.63 -26.89 -0.12 -1.82 16 14 C -0.12 -1.60 5.54 -26.72 -0.15 -1.75 16 15 C 0.14 1.74 2.29 -67.85 -0.16 1.59 16 16 H 0.09 1.46 6.25 -51.93 -0.32 1.14 16 17 N -0.72 -6.37 5.10 -53.73 -0.27 -6.64 16 18 C 0.51 4.80 7.81 -10.98 -0.09 4.72 16 19 O -0.54 -7.47 15.65 5.56 0.09 -7.39 16 20 C -0.14 -0.70 5.68 -27.89 -0.16 -0.86 16 21 C -0.03 -0.18 5.07 -27.89 -0.14 -0.33 16 22 C -0.01 -0.04 6.56 -82.09 -0.54 -0.58 16 23 C -0.05 -0.35 11.99 -17.73 -0.21 -0.56 16 24 N -0.27 -2.80 12.41 30.24 0.38 -2.43 16 25 N -0.08 -0.81 13.38 60.35 0.81 0.00 16 26 N -0.39 -2.40 6.98 33.54 0.23 -2.17 16 27 H 0.45 1.23 8.96 -190.40 -1.71 -0.48 16 28 C -0.11 -1.26 4.85 -27.96 -0.14 -1.39 16 29 C -0.09 -1.51 2.81 -90.77 -0.26 -1.77 16 30 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 31 C 0.14 2.79 6.19 -2.86 -0.02 2.77 16 32 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 33 H 0.04 1.01 7.51 -51.93 -0.39 0.62 16 34 H 0.05 1.29 6.99 -51.93 -0.36 0.93 16 35 H 0.07 1.34 7.16 -51.93 -0.37 0.97 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.40 2.27 8.61 -40.82 -0.35 1.91 16 40 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.09 0.50 8.10 -51.93 -0.42 0.08 16 43 H 0.11 0.63 8.10 -51.93 -0.42 0.21 16 44 H 0.19 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.02 0.40 6.15 -51.93 -0.32 0.09 16 48 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 379.01 15.07 5.71 5.71 Total: -1.00 -35.27 379.01 -9.51 -44.77 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -8.86 Total: -1.95 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -2.56 Total: -4.75 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 1.14 Total: -53.57 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: 0.09 Total: -7.39 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.27 -9.51 -44.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734194975.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.904 kcal (2) G-P(sol) polarization free energy of solvation -35.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds