Wall clock time and date at job start Tue Mar 31 2020 18:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 119.99944 * 2 1 4 4 H 1.48493 * 109.47327 * 240.00057 * 3 2 1 5 5 H 1.48496 * 109.46945 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46892 * 120.00196 * 3 2 1 7 7 C 1.38817 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99742 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00135 * 0.02562 * 7 2 1 10 10 C 1.47172 * 125.64403 * 0.02562 * 9 7 2 11 11 C 1.55350 * 106.95903 * 180.92856 * 10 9 7 12 12 H 1.09001 * 112.90919 * 214.96402 * 11 10 9 13 13 C 1.53007 * 106.41348 * 91.60872 * 11 10 9 14 14 C 1.52687 * 111.07939 * 197.21067 * 13 11 10 15 15 C 1.53330 * 108.36130 * 62.31631 * 14 13 11 16 16 H 1.09002 * 109.73745 * 55.57483 * 15 14 13 17 17 N 1.46504 * 109.74094 * 176.22991 * 15 14 13 18 18 C 1.34777 * 119.99569 * 274.34169 * 17 15 14 19 19 O 1.21280 * 120.00102 * 0.02562 * 18 17 15 20 20 C 1.50700 * 119.99815 * 179.97438 * 18 17 15 21 21 C 1.52994 * 109.47145 * 180.02562 * 20 18 17 22 22 C 1.50700 * 109.46924 * 180.02562 * 21 20 18 23 23 C 1.35352 * 126.91165 * 274.67847 * 22 21 20 24 24 N 1.33779 * 106.49912 * 179.90780 * 23 22 21 25 25 N 1.28638 * 108.87835 * 0.36903 * 24 23 22 26 26 N 1.28713 * 110.18105 * 359.77073 * 25 24 23 27 27 H 0.97002 * 125.86342 * 179.97438 * 26 25 24 28 28 C 1.52819 * 108.13259 * 295.90202 * 15 14 13 29 29 C 1.50737 * 111.74475 * 58.94155 * 28 15 14 30 30 H 1.09008 * 109.27005 * 186.23164 * 29 28 15 31 31 C 1.47816 * 125.65065 * 179.97438 * 9 7 2 32 32 H 0.97002 * 120.00025 * 359.97438 * 1 2 3 33 33 H 1.08994 * 109.96043 * 61.55967 * 10 9 7 34 34 H 1.08996 * 109.96714 * 300.30571 * 10 9 7 35 35 H 1.09001 * 109.15987 * 317.61005 * 13 11 10 36 36 H 1.08999 * 109.16497 * 76.85683 * 13 11 10 37 37 H 1.09006 * 109.65948 * 302.62363 * 14 13 11 38 38 H 1.08998 * 109.74800 * 182.05708 * 14 13 11 39 39 H 0.96993 * 120.00020 * 94.34110 * 17 15 14 40 40 H 1.09002 * 109.47214 * 300.00690 * 20 18 17 41 41 H 1.09001 * 109.46780 * 59.99869 * 20 18 17 42 42 H 1.08993 * 109.47303 * 300.00207 * 21 20 18 43 43 H 1.09001 * 109.47219 * 60.00577 * 21 20 18 44 44 H 1.07994 * 126.75299 * 0.04925 * 23 22 21 45 45 H 1.09002 * 109.03063 * 179.52678 * 28 15 14 46 46 H 1.09007 * 109.02820 * 298.44059 * 28 15 14 47 47 H 1.08999 * 110.51229 * 84.73523 * 31 9 7 48 48 H 1.09003 * 110.50546 * 322.02605 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1390 -2.5329 -0.0028 11 6 -0.4438 -4.0560 0.0204 12 1 -1.3325 -4.3196 -0.5531 13 6 -0.5725 -4.4488 1.4935 14 6 -0.4502 -5.9603 1.6716 15 6 0.9454 -6.3903 1.2040 16 1 1.7049 -5.8262 1.7452 17 7 1.1282 -7.8238 1.4454 18 6 1.5568 -8.2553 2.6481 19 8 1.7907 -7.4570 3.5307 20 6 1.7444 -9.7298 2.8966 21 6 2.2333 -9.9473 4.3299 22 6 2.4214 -11.4217 4.5781 23 6 1.4751 -12.3079 4.9668 24 7 2.0829 -13.4958 5.0615 25 7 3.3251 -13.3530 4.7594 26 7 3.5717 -12.1250 4.4631 27 1 4.4341 -11.7654 4.2024 28 6 1.0558 -6.1008 -0.2924 29 6 0.8410 -4.6400 -0.5958 30 1 0.8180 -4.4966 -1.6762 31 6 1.9351 -3.7348 -0.0028 32 1 -0.4850 0.8401 0.0004 33 1 -0.5566 -2.0835 -0.9037 34 1 -0.5609 -2.0554 0.8815 35 1 0.2144 -3.9567 2.0651 36 1 -1.5432 -4.1229 1.8673 37 1 -1.2092 -6.4628 1.0719 38 1 -0.5812 -6.2192 2.7222 39 1 0.9408 -8.4622 0.7396 40 1 0.7948 -10.2458 2.7547 41 1 2.4808 -10.1253 2.1971 42 1 3.1827 -9.4312 4.4722 43 1 1.4965 -9.5519 5.0291 44 1 0.4335 -12.0978 5.1601 45 1 2.0469 -6.3937 -0.6389 46 1 0.3061 -6.6869 -0.8241 47 1 2.1779 -4.0450 1.0135 48 1 2.8257 -3.7502 -0.6310 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734194975.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:54 Heat of formation + Delta-G solvation = 39.273119 kcal Electronic energy + Delta-G solvation = -28405.127379 eV Core-core repulsion = 24495.813979 eV Total energy + Delta-G solvation = -3909.313400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.27531 -41.33771 -40.16990 -37.02923 -35.39191 -34.93752 -34.12822 -33.28088 -32.25856 -31.12985 -30.27762 -27.71160 -26.89675 -25.67708 -23.96748 -23.56327 -23.03528 -22.45937 -21.69787 -21.24997 -19.61787 -19.20580 -18.84649 -17.88042 -17.47751 -16.99680 -16.77786 -16.60710 -15.99820 -15.57599 -15.36325 -15.22885 -14.99954 -14.96499 -14.53067 -14.18972 -14.00899 -13.95969 -13.65623 -13.32680 -13.15864 -13.06207 -12.85206 -12.72604 -12.65138 -12.44783 -12.26925 -12.22595 -12.11206 -11.78970 -11.77095 -11.74548 -11.57796 -11.30944 -11.08515 -10.90144 -10.76435 -10.65232 -10.12515 -9.91746 -8.86287 -7.84286 -5.19036 0.57496 1.43225 1.46783 1.52975 1.54984 1.75574 1.87094 2.29605 2.49041 3.32762 3.48188 3.66254 3.70976 3.75491 3.78567 3.91792 4.01636 4.06593 4.20635 4.22390 4.26813 4.35327 4.40519 4.52439 4.56701 4.59360 4.65292 4.68247 4.76187 4.86180 4.93690 5.04846 5.06218 5.09572 5.15474 5.21313 5.23697 5.28061 5.36974 5.44148 5.51295 5.55547 5.64732 5.76779 5.82594 5.99579 6.20798 6.70259 7.11524 7.41367 7.44766 7.79473 8.44580 9.25445 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.026904 B = 0.001978 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.471103 B =14150.583587 C =14537.995454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.069 4.069 3 Si 0.977 3.023 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.280 1.280 7 C -0.243 4.243 8 H 0.079 0.921 9 N -0.628 5.628 10 C 0.190 3.810 11 C -0.097 4.097 12 H 0.100 0.900 13 C -0.098 4.098 14 C -0.111 4.111 15 C 0.149 3.851 16 H 0.056 0.944 17 N -0.710 5.710 18 C 0.509 3.491 19 O -0.587 6.587 20 C -0.125 4.125 21 C -0.028 4.028 22 C 0.010 3.990 23 C -0.054 4.054 24 N -0.304 5.304 25 N -0.113 5.113 26 N -0.375 5.375 27 H 0.462 0.538 28 C -0.096 4.096 29 C -0.078 4.078 30 H 0.072 0.928 31 C 0.133 3.867 32 H 0.246 0.754 33 H 0.001 0.999 34 H 0.007 0.993 35 H 0.029 0.971 36 H 0.057 0.943 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.418 0.582 40 H 0.126 0.874 41 H 0.117 0.883 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.214 0.786 45 H 0.080 0.920 46 H 0.101 0.899 47 H 0.016 0.984 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.506 -25.523 2.386 25.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.262 4.262 3 Si 0.806 3.194 4 H -0.201 1.201 5 H -0.220 1.220 6 H -0.206 1.206 7 C -0.372 4.372 8 H 0.096 0.904 9 N -0.355 5.355 10 C 0.065 3.935 11 C -0.116 4.116 12 H 0.118 0.882 13 C -0.136 4.136 14 C -0.149 4.149 15 C 0.044 3.956 16 H 0.075 0.925 17 N -0.361 5.361 18 C 0.297 3.703 19 O -0.467 6.467 20 C -0.165 4.165 21 C -0.068 4.068 22 C -0.125 4.125 23 C -0.212 4.212 24 N -0.170 5.170 25 N -0.093 5.093 26 N -0.098 5.098 27 H 0.310 0.690 28 C -0.134 4.134 29 C -0.098 4.098 30 H 0.091 0.909 31 C 0.008 3.992 32 H 0.055 0.945 33 H 0.019 0.981 34 H 0.025 0.975 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.256 0.744 40 H 0.144 0.856 41 H 0.135 0.865 42 H 0.104 0.896 43 H 0.120 0.880 44 H 0.231 0.769 45 H 0.098 0.902 46 H 0.119 0.881 47 H 0.034 0.966 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.135 -26.267 3.188 26.546 hybrid contribution 0.427 2.801 -0.329 2.852 sum 2.562 -23.466 2.859 23.778 Atomic orbital electron populations 1.70184 1.06206 1.25197 1.58402 1.25649 0.96662 1.00985 1.02873 0.85168 0.77161 0.78936 0.78177 1.20137 1.21971 1.20597 1.19422 0.90902 0.84042 1.42821 0.90361 1.44883 1.02596 1.01052 1.86945 1.21222 0.83467 0.91708 0.97083 1.22370 0.98140 0.94799 0.96246 0.88182 1.21337 1.00619 0.96152 0.95492 1.21792 0.97414 0.94659 1.01056 1.20775 0.96795 0.81393 0.96617 0.92549 1.45911 1.67562 1.07862 1.14815 1.21200 0.75425 0.91983 0.81717 1.90759 1.52416 1.58478 1.45074 1.21648 1.06305 0.90801 0.97743 1.19833 1.04588 0.85126 0.97253 1.22378 0.86433 0.97474 1.06194 1.23962 1.02962 0.88147 1.06109 1.75093 0.99365 1.25104 1.17427 1.78264 1.12170 1.00126 1.18748 1.45203 1.12752 1.06691 1.45187 0.68980 1.21048 1.04002 0.94288 0.94070 1.21284 0.94265 0.94309 0.99946 0.90915 1.21695 0.95608 0.84861 0.97009 0.94495 0.98110 0.97489 0.95227 0.92394 0.89231 0.92877 0.74418 0.85627 0.86496 0.89570 0.88046 0.76943 0.90151 0.88105 0.96646 0.94409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.43 10.32 21.65 0.22 -58.21 16 2 C -0.07 -4.02 5.49 84.86 0.47 -3.56 16 3 Si 0.98 46.82 29.55 68.60 2.03 48.84 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 6 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 7 C -0.24 -13.99 10.28 84.03 0.86 -13.12 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 9 N -0.63 -32.85 3.41 -690.58 -2.35 -35.21 16 10 C 0.19 9.44 4.66 87.06 0.41 9.85 16 11 C -0.10 -3.32 3.61 -9.65 -0.03 -3.35 16 12 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 13 C -0.10 -3.17 4.63 30.49 0.14 -3.03 16 14 C -0.11 -2.61 5.54 30.60 0.17 -2.44 16 15 C 0.15 3.25 2.29 45.04 0.10 3.36 16 16 H 0.06 1.71 6.25 -2.39 -0.01 1.70 16 17 N -0.71 -9.67 5.10 -442.28 -2.26 -11.93 16 18 C 0.51 8.08 7.81 87.66 0.68 8.77 16 19 O -0.59 -15.78 15.65 -3.03 -0.05 -15.83 16 20 C -0.12 -0.76 5.68 29.85 0.17 -0.59 16 21 C -0.03 -0.23 5.07 29.85 0.15 -0.08 16 22 C 0.01 0.10 6.56 41.36 0.27 0.37 16 23 C -0.05 -0.70 11.99 83.73 1.00 0.31 16 24 N -0.30 -6.07 12.41 -58.25 -0.72 -6.80 16 25 N -0.11 -2.07 13.38 37.02 0.50 -1.58 16 26 N -0.38 -3.91 6.98 -47.79 -0.33 -4.24 16 27 H 0.46 1.58 8.96 -219.96 -1.97 -0.39 16 28 C -0.10 -1.88 4.85 29.80 0.14 -1.73 16 29 C -0.08 -2.38 2.81 -10.89 -0.03 -2.41 16 30 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 31 C 0.13 5.38 6.19 86.43 0.53 5.92 16 32 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 33 H 0.00 0.04 7.51 -2.39 -0.02 0.02 16 34 H 0.01 0.39 6.99 -2.39 -0.02 0.38 16 35 H 0.03 1.18 7.16 -2.39 -0.02 1.16 16 36 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.42 2.40 8.61 -92.71 -0.80 1.61 16 40 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.09 0.79 8.10 -2.39 -0.02 0.77 16 43 H 0.10 0.99 8.10 -2.39 -0.02 0.98 16 44 H 0.21 1.49 8.06 -2.91 -0.02 1.46 16 45 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 47 H 0.02 0.66 6.15 -2.39 -0.01 0.64 16 48 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -83.49 379.01 0.30 -83.19 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -1.78 Total: 3.51 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 5.04 Total: -1.76 kcal Atomic # 7 Polarization: -113.02 SS G_CDS: -4.95 Total: -117.96 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.05 Total: -15.83 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.84 kcal Total: -83.49 0.30 -83.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734194975.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.465 kcal (2) G-P(sol) polarization free energy of solvation -83.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds