Wall clock time and date at job start Tue Mar 31 2020 18:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00047 * 2 1 4 4 H 1.48499 * 109.47198 * 270.00072 * 3 2 1 5 5 H 1.48506 * 109.46963 * 29.99807 * 3 2 1 6 6 H 1.48497 * 109.47357 * 149.99784 * 3 2 1 7 7 C 1.38813 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99807 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00216 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00038 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47086 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.43679 * 52.45958 * 11 10 9 13 13 C 1.54897 * 110.59739 * 289.84013 * 11 10 9 14 14 C 1.54893 * 102.74817 * 203.32255 * 13 11 10 15 15 C 1.54266 * 104.19364 * 37.94345 * 14 13 11 16 16 H 1.08999 * 110.07178 * 95.69683 * 15 14 13 17 17 N 1.46496 * 110.03446 * 217.10322 * 15 14 13 18 18 C 1.34778 * 120.00550 * 272.17162 * 17 15 14 19 19 O 1.21289 * 119.99197 * 359.97438 * 18 17 15 20 20 C 1.50699 * 120.00440 * 179.97438 * 18 17 15 21 21 N 1.46500 * 109.46993 * 179.97438 * 20 18 17 22 22 C 1.35312 * 125.86582 * 124.99788 * 21 20 18 23 23 C 1.35359 * 106.17441 * 179.77310 * 22 21 20 24 24 C 1.50700 * 126.74961 * 180.24929 * 23 22 21 25 25 C 1.53001 * 117.49983 * 343.75067 * 24 23 22 26 26 C 1.52992 * 117.49873 * 275.08561 * 24 23 22 27 27 N 1.33772 * 106.49554 * 0.22938 * 23 22 21 28 28 N 1.28640 * 108.88426 * 359.97438 * 27 23 22 29 29 C 1.53880 * 106.60160 * 336.39158 * 15 14 13 30 30 H 0.96998 * 120.00194 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99790 * 0.02562 * 9 7 2 32 32 H 1.09011 * 109.46956 * 60.00235 * 10 9 7 33 33 H 1.09004 * 109.47337 * 300.00207 * 10 9 7 34 34 H 1.08997 * 110.75840 * 321.64043 * 13 11 10 35 35 H 1.09005 * 110.75293 * 84.82938 * 13 11 10 36 36 H 1.09001 * 110.48573 * 279.26739 * 14 13 11 37 37 H 1.08996 * 110.48390 * 156.62131 * 14 13 11 38 38 H 0.97002 * 119.99875 * 92.16548 * 17 15 14 39 39 H 1.08994 * 109.47067 * 60.00117 * 20 18 17 40 40 H 1.08995 * 109.47156 * 300.00206 * 20 18 17 41 41 H 1.08002 * 126.91567 * 0.04325 * 22 21 20 42 42 H 1.09003 * 115.54638 * 129.41742 * 24 23 22 43 43 H 1.08999 * 117.49582 * 359.97438 * 25 24 23 44 44 H 1.08994 * 117.49755 * 145.02362 * 25 24 23 45 45 H 1.09004 * 117.50203 * 214.97972 * 26 24 23 46 46 H 1.09006 * 117.50032 * 359.97438 * 26 24 23 47 47 H 1.09000 * 110.03100 * 119.28578 * 29 15 14 48 48 H 1.09003 * 110.02861 * 240.71410 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0904 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 -0.0001 12 1 0.3439 -4.7044 -0.8102 13 6 0.3353 -4.9144 1.3635 14 6 -0.1158 -6.3956 1.4078 15 6 1.0573 -7.1675 0.7692 16 1 1.7228 -7.5458 1.5451 17 7 0.5468 -8.2778 -0.0388 18 6 0.3175 -9.4770 0.5321 19 8 0.5343 -9.6370 1.7146 20 6 -0.2082 -10.6190 -0.2989 21 7 -0.3710 -11.8039 0.5470 22 6 -1.5090 -12.5205 0.6971 23 6 -1.2127 -13.5230 1.5570 24 6 -2.1479 -14.6002 2.0427 25 6 -3.6481 -14.3762 1.8430 26 6 -3.0383 -14.2741 3.2434 27 7 0.0737 -13.3696 1.8905 28 7 0.5429 -12.3407 1.2772 29 6 1.8074 -6.1655 -0.1260 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 2.6848 -3.7145 0.8906 33 1 2.6849 -3.7145 -0.8894 34 1 1.0192 -4.6941 2.1831 35 1 -0.5246 -4.2450 1.3892 36 1 -1.0263 -6.5347 0.8250 37 1 -0.2682 -6.7172 2.4381 38 1 0.3737 -8.1499 -0.9846 39 1 0.4966 -10.8395 -1.1006 40 1 -1.1715 -10.3430 -0.7277 41 1 -2.4609 -12.3332 0.2225 42 1 -1.7753 -15.6209 1.9549 43 1 -3.9587 -13.4494 1.3606 44 1 -4.2627 -15.2494 1.6243 45 1 -3.2520 -15.0802 3.9453 46 1 -2.9474 -13.2805 3.6822 47 1 2.8366 -6.0570 0.2161 48 1 1.7915 -6.5054 -1.1615 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734479594.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:30 Heat of formation + Delta-G solvation = 96.462810 kcal Electronic energy + Delta-G solvation = -27378.467081 eV Core-core repulsion = 23471.633613 eV Total energy + Delta-G solvation = -3906.833469 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.58720 -40.29028 -38.24082 -37.64736 -35.00693 -34.73982 -33.54288 -31.20989 -31.03196 -29.47460 -28.87014 -27.37978 -24.48798 -24.43706 -23.20175 -22.43659 -22.22471 -21.27279 -20.56722 -20.49563 -19.72955 -17.99676 -17.94321 -17.06495 -16.64149 -16.23506 -15.79199 -15.67144 -15.16137 -14.86875 -14.84580 -14.54221 -14.20883 -13.93113 -13.49716 -13.29922 -13.04393 -12.85532 -12.75592 -12.27589 -11.99301 -11.92976 -11.83643 -11.52008 -11.39669 -11.15466 -11.14552 -10.88777 -10.81250 -10.68311 -10.65181 -10.62323 -10.34049 -10.29699 -10.04865 -9.98119 -9.69656 -9.33981 -9.32028 -8.88149 -6.92823 -5.78211 -3.06391 1.22725 1.78057 2.11265 2.22790 2.76333 3.35028 3.42262 3.47654 3.49264 3.78556 4.06467 4.12885 4.31826 4.38308 4.44454 4.51539 4.54479 4.62745 4.70459 4.80012 4.94820 4.95202 5.19599 5.38461 5.42325 5.43557 5.47254 5.52532 5.55929 5.59526 5.65718 5.73258 5.79089 5.80016 5.82127 5.99213 6.05109 6.12794 6.20228 6.23730 6.38601 6.50017 6.53978 6.75980 6.89304 7.07063 7.68657 7.76615 8.26705 8.41094 9.52304 10.10768 10.45315 11.44761 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.034637 B = 0.001629 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.187364 B =17181.000782 C =17547.754755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.159 3.841 11 C -0.096 4.096 12 H 0.075 0.925 13 C -0.111 4.111 14 C -0.133 4.133 15 C 0.142 3.858 16 H 0.092 0.908 17 N -0.715 5.715 18 C 0.499 3.501 19 O -0.508 6.508 20 C 0.095 3.905 21 N -0.281 5.281 22 C -0.049 4.049 23 C 0.010 3.990 24 C -0.072 4.072 25 C -0.170 4.170 26 C -0.165 4.165 27 N -0.264 5.264 28 N -0.051 5.051 29 C -0.122 4.122 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.020 0.980 33 H 0.017 0.983 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.402 0.598 39 H 0.130 0.870 40 H 0.136 0.864 41 H 0.189 0.811 42 H 0.122 0.878 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.096 0.904 47 H 0.078 0.922 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.579 -29.150 -2.917 30.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.032 3.968 11 C -0.115 4.115 12 H 0.094 0.906 13 C -0.149 4.149 14 C -0.172 4.172 15 C 0.038 3.962 16 H 0.110 0.890 17 N -0.368 5.368 18 C 0.282 3.718 19 O -0.381 6.381 20 C -0.030 4.030 21 N -0.075 5.075 22 C -0.199 4.199 23 C -0.127 4.127 24 C -0.092 4.092 25 C -0.208 4.208 26 C -0.202 4.202 27 N -0.131 5.131 28 N -0.030 5.030 29 C -0.161 4.161 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.038 0.962 33 H 0.035 0.965 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.237 0.763 39 H 0.148 0.852 40 H 0.154 0.846 41 H 0.206 0.794 42 H 0.140 0.860 43 H 0.114 0.886 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.114 0.886 47 H 0.097 0.903 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.772 -29.036 -1.594 29.647 hybrid contribution -1.067 1.221 -1.039 1.926 sum -6.838 -27.815 -2.633 28.764 Atomic orbital electron populations 1.69655 1.05106 1.25614 1.57925 1.24731 0.95523 0.97676 1.03092 0.86192 0.78678 0.83853 0.77494 1.21755 1.21775 1.20770 1.19247 0.91049 0.84253 1.42507 0.91232 1.42337 1.05838 0.99946 1.89444 1.20700 0.93069 0.85339 0.97713 1.22152 0.97817 0.93703 0.97847 0.90645 1.22472 1.00703 0.94255 0.97482 1.22786 0.97484 0.96105 1.00799 1.21803 0.95695 0.85197 0.93487 0.88966 1.46137 1.66929 1.10434 1.13325 1.20201 0.79314 0.83717 0.88606 1.90856 1.49742 1.82328 1.15216 1.21907 1.06429 0.82176 0.92536 1.46710 1.08373 1.20992 1.31395 1.23244 0.93508 0.96821 1.06304 1.20998 0.93125 0.98487 1.00091 1.19996 0.89149 0.96441 1.03632 1.23032 0.93965 1.03670 1.00098 1.23027 1.02445 1.03625 0.91149 1.75098 1.08834 1.10201 1.18980 1.78469 1.15619 1.04583 1.04330 1.22442 1.00016 0.94520 0.99091 0.93555 0.78299 0.96224 0.96522 0.91112 0.90795 0.91504 0.91508 0.76339 0.85191 0.84649 0.79365 0.86029 0.88614 0.87902 0.88008 0.88574 0.90321 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.73 -18.10 5.49 -59.90 -0.33 -18.43 16 10 C 0.16 3.06 5.55 -4.04 -0.02 3.04 16 11 C -0.10 -1.40 2.88 -88.96 -0.26 -1.65 16 12 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 13 C -0.11 -1.61 6.20 -24.73 -0.15 -1.76 16 14 C -0.13 -1.60 6.53 -25.07 -0.16 -1.76 16 15 C 0.14 1.53 3.25 -66.81 -0.22 1.32 16 16 H 0.09 1.17 7.56 -51.93 -0.39 0.78 16 17 N -0.72 -5.66 5.03 -52.72 -0.27 -5.92 16 18 C 0.50 4.78 7.84 -10.99 -0.09 4.70 16 19 O -0.51 -7.64 15.33 5.55 0.09 -7.56 16 20 C 0.10 0.53 6.94 -5.19 -0.04 0.49 16 21 N -0.28 -2.72 3.20 -62.44 -0.20 -2.92 16 22 C -0.05 -0.40 10.89 -17.04 -0.19 -0.58 16 23 C 0.01 0.10 6.88 -82.77 -0.57 -0.47 16 24 C -0.07 -0.53 6.33 -91.78 -0.58 -1.11 16 25 C -0.17 -0.83 10.03 -26.69 -0.27 -1.09 16 26 C -0.16 -1.07 10.24 -26.69 -0.27 -1.34 16 27 N -0.26 -3.68 12.41 33.29 0.41 -3.27 16 28 N -0.05 -0.70 12.12 60.35 0.73 0.03 16 29 C -0.12 -1.34 6.14 -25.61 -0.16 -1.50 16 30 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.38 9.92 7.64 -40.82 -0.31 9.61 16 32 H 0.02 0.39 8.03 -51.92 -0.42 -0.03 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 1.09 7.97 -51.93 -0.41 0.68 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.40 1.84 8.32 -40.82 -0.34 1.50 16 39 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.14 0.19 8.07 -51.93 -0.42 -0.23 16 41 H 0.19 0.71 7.45 -52.49 -0.39 0.32 16 42 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.10 0.39 7.23 -51.93 -0.38 0.01 16 44 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.08 0.89 7.84 -51.93 -0.41 0.49 16 48 H 0.07 0.62 7.62 -51.93 -0.40 0.23 16 LS Contribution 397.89 15.07 6.00 6.00 Total: -1.00 -37.59 397.89 -8.71 -46.30 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -7.63 Total: 4.80 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -3.22 Total: -9.04 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 1.07 Total: -57.78 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: 0.09 Total: -7.56 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.59 -8.71 -46.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734479594.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.763 kcal (2) G-P(sol) polarization free energy of solvation -37.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds