Wall clock time and date at job start Tue Mar 31 2020 18:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00047 * 2 1 4 4 H 1.48499 * 109.47198 * 270.00072 * 3 2 1 5 5 H 1.48506 * 109.46963 * 29.99807 * 3 2 1 6 6 H 1.48497 * 109.47357 * 149.99784 * 3 2 1 7 7 C 1.38813 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99807 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00216 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00038 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47086 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.43679 * 52.45958 * 11 10 9 13 13 C 1.54897 * 110.59739 * 289.84013 * 11 10 9 14 14 C 1.54893 * 102.74817 * 203.32255 * 13 11 10 15 15 C 1.54266 * 104.19364 * 37.94345 * 14 13 11 16 16 H 1.08999 * 110.07178 * 95.69683 * 15 14 13 17 17 N 1.46496 * 110.03446 * 217.10322 * 15 14 13 18 18 C 1.34778 * 120.00550 * 272.17162 * 17 15 14 19 19 O 1.21289 * 119.99197 * 359.97438 * 18 17 15 20 20 C 1.50699 * 120.00440 * 179.97438 * 18 17 15 21 21 N 1.46500 * 109.46993 * 179.97438 * 20 18 17 22 22 C 1.35312 * 125.86582 * 124.99788 * 21 20 18 23 23 C 1.35359 * 106.17441 * 179.77310 * 22 21 20 24 24 C 1.50700 * 126.74961 * 180.24929 * 23 22 21 25 25 C 1.53001 * 117.49983 * 343.75067 * 24 23 22 26 26 C 1.52992 * 117.49873 * 275.08561 * 24 23 22 27 27 N 1.33772 * 106.49554 * 0.22938 * 23 22 21 28 28 N 1.28640 * 108.88426 * 359.97438 * 27 23 22 29 29 C 1.53880 * 106.60160 * 336.39158 * 15 14 13 30 30 H 0.96998 * 120.00194 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99790 * 0.02562 * 9 7 2 32 32 H 1.09011 * 109.46956 * 60.00235 * 10 9 7 33 33 H 1.09004 * 109.47337 * 300.00207 * 10 9 7 34 34 H 1.08997 * 110.75840 * 321.64043 * 13 11 10 35 35 H 1.09005 * 110.75293 * 84.82938 * 13 11 10 36 36 H 1.09001 * 110.48573 * 279.26739 * 14 13 11 37 37 H 1.08996 * 110.48390 * 156.62131 * 14 13 11 38 38 H 0.97002 * 119.99875 * 92.16548 * 17 15 14 39 39 H 1.08994 * 109.47067 * 60.00117 * 20 18 17 40 40 H 1.08995 * 109.47156 * 300.00206 * 20 18 17 41 41 H 1.08002 * 126.91567 * 0.04325 * 22 21 20 42 42 H 1.09003 * 115.54638 * 129.41742 * 24 23 22 43 43 H 1.08999 * 117.49582 * 359.97438 * 25 24 23 44 44 H 1.08994 * 117.49755 * 145.02362 * 25 24 23 45 45 H 1.09004 * 117.50203 * 214.97972 * 26 24 23 46 46 H 1.09006 * 117.50032 * 359.97438 * 26 24 23 47 47 H 1.09000 * 110.03100 * 119.28578 * 29 15 14 48 48 H 1.09003 * 110.02861 * 240.71410 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0904 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 -0.0001 12 1 0.3439 -4.7044 -0.8102 13 6 0.3353 -4.9144 1.3635 14 6 -0.1158 -6.3956 1.4078 15 6 1.0573 -7.1675 0.7692 16 1 1.7228 -7.5458 1.5451 17 7 0.5468 -8.2778 -0.0388 18 6 0.3175 -9.4770 0.5321 19 8 0.5343 -9.6370 1.7146 20 6 -0.2082 -10.6190 -0.2989 21 7 -0.3710 -11.8039 0.5470 22 6 -1.5090 -12.5205 0.6971 23 6 -1.2127 -13.5230 1.5570 24 6 -2.1479 -14.6002 2.0427 25 6 -3.6481 -14.3762 1.8430 26 6 -3.0383 -14.2741 3.2434 27 7 0.0737 -13.3696 1.8905 28 7 0.5429 -12.3407 1.2772 29 6 1.8074 -6.1655 -0.1260 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 2.6848 -3.7145 0.8906 33 1 2.6849 -3.7145 -0.8894 34 1 1.0192 -4.6941 2.1831 35 1 -0.5246 -4.2450 1.3892 36 1 -1.0263 -6.5347 0.8250 37 1 -0.2682 -6.7172 2.4381 38 1 0.3737 -8.1499 -0.9846 39 1 0.4966 -10.8395 -1.1006 40 1 -1.1715 -10.3430 -0.7277 41 1 -2.4609 -12.3332 0.2225 42 1 -1.7753 -15.6209 1.9549 43 1 -3.9587 -13.4494 1.3606 44 1 -4.2627 -15.2494 1.6243 45 1 -3.2520 -15.0802 3.9453 46 1 -2.9474 -13.2805 3.6822 47 1 2.8366 -6.0570 0.2161 48 1 1.7915 -6.5054 -1.1615 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734479594.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:29 Heat of formation + Delta-G solvation = 69.270215 kcal Electronic energy + Delta-G solvation = -27379.646241 eV Core-core repulsion = 23471.633613 eV Total energy + Delta-G solvation = -3908.012628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.28631 -41.12014 -39.29480 -38.15136 -36.51122 -35.44453 -34.85683 -32.97784 -31.69968 -30.38908 -30.07424 -28.44121 -26.17005 -25.04420 -23.97423 -23.80366 -23.01197 -21.94103 -21.45517 -21.24102 -20.94615 -19.09142 -18.66691 -18.56556 -17.39532 -16.99186 -16.72588 -16.45085 -16.32860 -15.87985 -15.76155 -15.50037 -15.28169 -15.10247 -14.87896 -14.54195 -14.39915 -13.79698 -13.57168 -13.35829 -13.14296 -12.91157 -12.79979 -12.57469 -12.43299 -12.30263 -12.18375 -12.16689 -12.08621 -11.81323 -11.72025 -11.64613 -11.55154 -11.49735 -11.38382 -11.19791 -10.90901 -10.79707 -10.15188 -9.98680 -8.97575 -7.95210 -5.22958 0.57138 1.26204 1.42945 1.47271 1.48523 1.48738 1.56991 2.10350 2.56140 2.87348 3.27157 3.38371 3.48697 3.55955 3.64820 3.76630 3.87684 3.91004 3.99952 4.04064 4.07048 4.17655 4.27289 4.40193 4.41812 4.48748 4.51472 4.60072 4.68614 4.76280 4.78107 4.84768 4.86124 4.98064 5.04309 5.07224 5.13891 5.19395 5.21738 5.22786 5.30134 5.36686 5.47137 5.50641 5.56088 5.58503 6.27887 6.44419 7.13680 7.34372 7.51760 8.12076 8.34920 9.28273 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.034637 B = 0.001629 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.187364 B =17181.000782 C =17547.754755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.972 3.028 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.272 1.272 7 C -0.247 4.247 8 H 0.073 0.927 9 N -0.743 5.743 10 C 0.156 3.844 11 C -0.086 4.086 12 H 0.079 0.921 13 C -0.112 4.112 14 C -0.121 4.121 15 C 0.151 3.849 16 H 0.071 0.929 17 N -0.698 5.698 18 C 0.497 3.503 19 O -0.570 6.570 20 C 0.093 3.907 21 N -0.279 5.279 22 C -0.032 4.032 23 C -0.010 4.010 24 C -0.091 4.091 25 C -0.141 4.141 26 C -0.178 4.178 27 N -0.312 5.312 28 N -0.102 5.102 29 C -0.109 4.109 30 H 0.251 0.749 31 H 0.375 0.625 32 H 0.014 0.986 33 H 0.023 0.977 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.053 0.947 38 H 0.423 0.577 39 H 0.163 0.837 40 H 0.190 0.810 41 H 0.237 0.763 42 H 0.121 0.879 43 H 0.110 0.890 44 H 0.123 0.877 45 H 0.111 0.889 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.755 -30.171 -5.427 31.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.197 1.197 7 C -0.379 4.379 8 H 0.091 0.909 9 N -0.386 5.386 10 C 0.029 3.971 11 C -0.105 4.105 12 H 0.097 0.903 13 C -0.150 4.150 14 C -0.160 4.160 15 C 0.046 3.954 16 H 0.089 0.911 17 N -0.352 5.352 18 C 0.282 3.718 19 O -0.448 6.448 20 C -0.030 4.030 21 N -0.073 5.073 22 C -0.182 4.182 23 C -0.149 4.149 24 C -0.111 4.111 25 C -0.178 4.178 26 C -0.215 4.215 27 N -0.178 5.178 28 N -0.081 5.081 29 C -0.147 4.147 30 H 0.060 0.940 31 H 0.207 0.793 32 H 0.032 0.968 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.262 0.738 39 H 0.180 0.820 40 H 0.207 0.793 41 H 0.254 0.746 42 H 0.139 0.861 43 H 0.128 0.872 44 H 0.141 0.859 45 H 0.129 0.871 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.897 -30.075 -4.154 31.134 hybrid contribution -0.710 1.523 -0.248 1.699 sum -7.607 -28.551 -4.402 29.873 Atomic orbital electron populations 1.69803 1.06514 1.26015 1.59577 1.25530 0.96400 1.00984 1.03781 0.85167 0.77655 0.79615 0.77490 1.21228 1.22235 1.19694 1.19653 0.91489 0.85603 1.41124 0.90877 1.42544 1.05650 1.01115 1.89297 1.20893 0.93906 0.84887 0.97368 1.22021 0.97059 0.93738 0.97712 0.90264 1.22392 0.99651 0.95771 0.97151 1.22662 0.98580 0.94143 1.00618 1.21449 0.94787 0.85818 0.93373 0.91081 1.45900 1.65961 1.09286 1.14067 1.20903 0.78102 0.84644 0.88148 1.90851 1.52403 1.83361 1.18179 1.22384 1.10036 0.79145 0.91422 1.47040 1.08149 1.21457 1.30630 1.23969 0.94350 0.95190 1.04714 1.21583 0.92464 1.00016 1.00795 1.20086 0.90327 0.95799 1.04853 1.23175 0.91791 1.05061 0.97791 1.23052 1.03293 1.03008 0.92191 1.75009 1.11176 1.11206 1.20432 1.78376 1.17500 1.05687 1.06531 1.22326 0.99198 0.92211 1.01002 0.94032 0.79336 0.96815 0.95937 0.92820 0.92768 0.89952 0.92784 0.73802 0.81961 0.79309 0.74637 0.86110 0.87174 0.85894 0.87095 0.90357 0.90538 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.75 13.06 21.65 0.28 -58.47 16 2 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 3 Si 0.97 45.96 29.55 68.60 2.03 47.99 16 4 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.25 -13.75 9.99 84.03 0.84 -12.91 16 8 H 0.07 3.93 7.83 -2.90 -0.02 3.91 16 9 N -0.74 -37.04 5.49 -343.43 -1.89 -38.93 16 10 C 0.16 5.92 5.55 86.38 0.48 6.40 16 11 C -0.09 -2.41 2.88 -9.72 -0.03 -2.44 16 12 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 13 C -0.11 -3.26 6.20 31.89 0.20 -3.06 16 14 C -0.12 -2.81 6.53 31.67 0.21 -2.61 16 15 C 0.15 3.03 3.25 45.72 0.15 3.18 16 16 H 0.07 1.80 7.56 -2.39 -0.02 1.78 16 17 N -0.70 -8.91 5.03 -439.09 -2.21 -11.12 16 18 C 0.50 8.44 7.84 87.66 0.69 9.13 16 19 O -0.57 -17.18 15.33 -3.06 -0.05 -17.23 16 20 C 0.09 0.68 6.94 85.63 0.59 1.27 16 21 N -0.28 -4.84 3.20 -351.47 -1.12 -5.97 16 22 C -0.03 -0.43 10.89 83.49 0.91 0.48 16 23 C -0.01 -0.21 6.88 41.60 0.29 0.08 16 24 C -0.09 -1.26 6.33 -11.54 -0.07 -1.33 16 25 C -0.14 -0.97 10.03 30.62 0.31 -0.66 16 26 C -0.18 -2.18 10.24 30.62 0.31 -1.87 16 27 N -0.31 -9.04 12.41 -48.59 -0.60 -9.64 16 28 N -0.10 -2.87 12.12 37.02 0.45 -2.42 16 29 C -0.11 -2.14 6.14 31.32 0.19 -1.95 16 30 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 31 H 0.37 19.73 7.64 -92.71 -0.71 19.02 16 32 H 0.01 0.55 8.03 -2.38 -0.02 0.53 16 33 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 1.73 7.97 -2.39 -0.02 1.71 16 35 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.08 1.66 8.05 -2.39 -0.02 1.64 16 37 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.42 1.87 8.32 -92.71 -0.77 1.10 16 39 H 0.16 0.19 8.14 -2.39 -0.02 0.17 16 40 H 0.19 -0.69 8.07 -2.39 -0.02 -0.71 16 41 H 0.24 0.53 7.45 -2.91 -0.02 0.51 16 42 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.11 0.44 7.23 -2.39 -0.02 0.42 16 44 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 46 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 47 H 0.08 1.59 7.84 -2.39 -0.02 1.58 16 48 H 0.10 1.39 7.62 -2.39 -0.02 1.37 16 Total: -1.00 -87.85 397.89 1.92 -85.94 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -0.50 Total: 19.96 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: 5.53 Total: -10.11 kcal Atomic # 7 Polarization: -121.45 SS G_CDS: -5.09 Total: -126.55 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.05 Total: -17.23 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -87.85 1.92 -85.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734479594.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.208 kcal (2) G-P(sol) polarization free energy of solvation -87.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds