Wall clock time and date at job start Tue Mar 31 2020 18:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99714 * 2 1 4 4 H 1.48502 * 109.47284 * 269.99990 * 3 2 1 5 5 H 1.48501 * 109.47164 * 29.99894 * 3 2 1 6 6 H 1.48503 * 109.46905 * 149.99863 * 3 2 1 7 7 C 1.38807 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00246 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00089 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00118 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47312 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.01449 * 306.38774 * 11 10 9 13 13 C 1.53874 * 110.03392 * 67.82983 * 11 10 9 14 14 C 1.54469 * 106.68518 * 119.44651 * 13 11 10 15 15 C 1.54889 * 104.09950 * 23.33969 * 14 13 11 16 16 H 1.09006 * 110.75482 * 80.70954 * 15 14 13 17 17 N 1.46496 * 110.75745 * 203.89226 * 15 14 13 18 18 C 1.34777 * 120.00258 * 271.07195 * 17 15 14 19 19 O 1.21279 * 120.00166 * 359.97438 * 18 17 15 20 20 C 1.50706 * 119.99762 * 179.97438 * 18 17 15 21 21 N 1.46500 * 109.46949 * 179.97438 * 20 18 17 22 22 C 1.35312 * 125.86942 * 124.71323 * 21 20 18 23 23 C 1.35349 * 106.17557 * 179.90794 * 22 21 20 24 24 C 1.50699 * 126.75117 * 180.12614 * 23 22 21 25 25 C 1.53002 * 117.50068 * 343.86822 * 24 23 22 26 26 C 1.52997 * 117.50270 * 275.24173 * 24 23 22 27 27 N 1.33774 * 106.49692 * 0.34849 * 23 22 21 28 28 N 1.28631 * 108.88538 * 359.77935 * 27 23 22 29 29 C 1.54261 * 110.03408 * 184.99997 * 11 10 9 30 30 H 0.97005 * 120.00391 * 359.97438 * 1 2 3 31 31 H 0.96996 * 119.99847 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47085 * 59.99572 * 10 9 7 33 33 H 1.08999 * 109.47195 * 299.99798 * 10 9 7 34 34 H 1.09007 * 110.02980 * 238.57011 * 13 11 10 35 35 H 1.09002 * 110.03029 * 359.95384 * 13 11 10 36 36 H 1.09001 * 110.39847 * 264.76090 * 14 13 11 37 37 H 1.08995 * 110.66249 * 142.05661 * 14 13 11 38 38 H 0.96999 * 119.99694 * 91.06585 * 17 15 14 39 39 H 1.09000 * 109.47318 * 299.99141 * 20 18 17 40 40 H 1.09000 * 109.47161 * 59.99772 * 20 18 17 41 41 H 1.07997 * 126.91137 * 0.02562 * 22 21 20 42 42 H 1.09009 * 115.54911 * 129.57710 * 24 23 22 43 43 H 1.08996 * 117.49373 * 359.97438 * 25 24 23 44 44 H 1.08999 * 117.50081 * 145.02107 * 25 24 23 45 45 H 1.08994 * 117.50491 * 214.97771 * 26 24 23 46 46 H 1.09004 * 117.49601 * 0.02562 * 26 24 23 47 47 H 1.09005 * 110.49216 * 98.42255 * 29 11 10 48 48 H 1.09004 * 110.48633 * 335.78106 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3796 -1.2020 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6164 -2.1912 0.0011 12 1 5.8721 -1.5256 -0.8234 13 6 6.0349 -1.5585 1.3398 14 6 7.0627 -2.5169 1.9811 15 6 7.6386 -3.3100 0.7818 16 1 8.4035 -2.7293 0.2661 17 7 8.1775 -4.5990 1.2225 18 6 9.4622 -4.6923 1.6190 19 8 10.1724 -3.7092 1.6105 20 6 10.0163 -6.0183 2.0728 21 7 11.4231 -5.8569 2.4483 22 6 11.9687 -6.1902 3.6409 23 6 13.2826 -5.8767 3.5553 24 6 14.3253 -6.0611 4.6275 25 6 13.8343 -6.2979 6.0572 26 6 14.4631 -4.9560 5.6766 27 7 13.4725 -5.3664 2.3334 28 7 12.3515 -5.3684 1.7025 29 6 6.3998 -3.5140 -0.1252 30 1 -0.4851 0.8401 0.0004 31 1 3.8646 -0.3620 0.0007 32 1 3.8492 -3.0422 -0.8891 33 1 3.8486 -3.0425 0.8908 34 1 6.4945 -0.5856 1.1655 35 1 5.1663 -1.4499 1.9892 36 1 6.5688 -3.1901 2.6818 37 1 7.8517 -1.9557 2.4816 38 1 7.6096 -5.3854 1.2290 39 1 9.4489 -6.3740 2.9329 40 1 9.9379 -6.7418 1.2613 41 1 11.4587 -6.6215 4.4896 42 1 15.2346 -6.5751 4.3156 43 1 12.7572 -6.3199 6.2222 44 1 14.4205 -6.9679 6.6862 45 1 15.4628 -4.7432 6.0552 46 1 13.7992 -4.0956 5.5914 47 1 6.7063 -3.6789 -1.1582 48 1 5.7981 -4.3494 0.2330 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734479596.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:33 Heat of formation + Delta-G solvation = 99.674438 kcal Electronic energy + Delta-G solvation = -27470.443079 eV Core-core repulsion = 23563.748877 eV Total energy + Delta-G solvation = -3906.694202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.62164 -40.31964 -38.37203 -37.68815 -35.17385 -34.78666 -33.65356 -31.39941 -31.06675 -29.61073 -29.08365 -27.58883 -24.58470 -24.47827 -23.23411 -22.48645 -21.96396 -21.31348 -20.88285 -20.61072 -19.43962 -18.03889 -18.00235 -17.56585 -16.60645 -16.29281 -15.87513 -15.78141 -15.51529 -15.04618 -14.82949 -14.55823 -14.29900 -13.88877 -13.64852 -13.22375 -13.07179 -12.85979 -12.75878 -12.31691 -12.10783 -12.01944 -11.88207 -11.72728 -11.55062 -11.48615 -11.18216 -11.01866 -10.95164 -10.73171 -10.70526 -10.58763 -10.49528 -10.31631 -10.09236 -10.03335 -9.61418 -9.38059 -9.37155 -8.91781 -7.25351 -5.79417 -3.14827 1.18904 1.74226 2.05366 2.19638 2.69336 3.32423 3.35788 3.38966 3.43951 3.74688 4.02178 4.06516 4.27713 4.35002 4.41813 4.48783 4.49407 4.57038 4.62948 4.77146 4.81991 4.91835 5.17052 5.26743 5.35291 5.38934 5.40513 5.42096 5.42596 5.52758 5.61682 5.63194 5.70619 5.72232 5.79035 5.84096 5.93889 5.96129 6.08775 6.11375 6.22305 6.33393 6.45681 6.65508 6.75870 7.00591 7.70328 7.96735 8.23382 8.39761 9.19197 9.91729 10.11641 11.38966 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.028117 B = 0.001743 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.593182 B =16060.738028 C =16402.033621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.089 0.911 9 N -0.756 5.756 10 C 0.165 3.835 11 C -0.100 4.100 12 H 0.075 0.925 13 C -0.119 4.119 14 C -0.131 4.131 15 C 0.139 3.861 16 H 0.097 0.903 17 N -0.715 5.715 18 C 0.500 3.500 19 O -0.507 6.507 20 C 0.096 3.904 21 N -0.282 5.282 22 C -0.049 4.049 23 C 0.010 3.990 24 C -0.072 4.072 25 C -0.170 4.170 26 C -0.165 4.165 27 N -0.264 5.264 28 N -0.051 5.051 29 C -0.119 4.119 30 H 0.259 0.741 31 H 0.361 0.639 32 H 0.026 0.974 33 H 0.027 0.973 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.403 0.597 39 H 0.136 0.864 40 H 0.131 0.869 41 H 0.189 0.811 42 H 0.122 0.878 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.096 0.904 47 H 0.072 0.928 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.758 -18.429 10.515 33.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.038 3.962 11 C -0.119 4.119 12 H 0.093 0.907 13 C -0.157 4.157 14 C -0.170 4.170 15 C 0.035 3.965 16 H 0.115 0.885 17 N -0.367 5.367 18 C 0.283 3.717 19 O -0.381 6.381 20 C -0.030 4.030 21 N -0.075 5.075 22 C -0.198 4.198 23 C -0.127 4.127 24 C -0.092 4.092 25 C -0.208 4.208 26 C -0.203 4.203 27 N -0.131 5.131 28 N -0.030 5.030 29 C -0.157 4.157 30 H 0.069 0.931 31 H 0.194 0.806 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.237 0.763 39 H 0.154 0.846 40 H 0.149 0.851 41 H 0.206 0.794 42 H 0.140 0.860 43 H 0.114 0.886 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.114 0.886 47 H 0.091 0.909 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 26.345 -17.183 9.097 32.742 hybrid contribution -0.366 0.377 1.004 1.133 sum 25.979 -16.805 10.100 32.548 Atomic orbital electron populations 1.69702 1.05109 1.25836 1.57575 1.24672 0.95236 0.97217 1.02019 0.86557 0.79246 0.84964 0.77832 1.21066 1.21721 1.20267 1.19055 0.80698 0.94695 1.43052 0.89288 1.42717 1.03999 1.02297 1.91129 1.20708 0.87773 0.89279 0.98419 1.21926 0.96488 0.95618 0.97902 0.90668 1.22209 0.98786 0.98015 0.96708 1.22755 0.98452 0.98444 0.97317 1.22146 0.95745 0.83159 0.95430 0.88502 1.45902 1.10928 1.12913 1.66923 1.20203 0.82759 0.89937 0.78836 1.90857 1.57841 1.37531 1.51845 1.21901 0.77258 0.98486 1.05366 1.46713 1.09235 1.40993 1.10596 1.23239 0.95237 1.09563 0.91798 1.20998 0.92869 1.03962 0.94849 1.19999 0.97884 1.04830 0.86532 1.23022 1.01478 1.00120 0.96132 1.23016 1.02851 0.92817 1.01568 1.75096 1.16094 1.16854 1.05018 1.78469 0.91169 1.14166 1.19217 1.22594 0.94827 0.98905 0.99421 0.93060 0.80614 0.95639 0.95543 0.92034 0.90191 0.91361 0.91609 0.76269 0.84613 0.85135 0.79356 0.86004 0.88621 0.87887 0.87990 0.88591 0.90892 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.21 13.97 55.49 0.78 -28.44 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 3 Si 0.88 22.05 27.74 -169.99 -4.71 17.34 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 7 C -0.25 -6.87 10.47 -15.06 -0.16 -7.03 16 8 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 9 N -0.76 -17.52 5.19 -59.91 -0.31 -17.83 16 10 C 0.17 2.98 5.27 -4.04 -0.02 2.96 16 11 C -0.10 -1.39 2.96 -89.51 -0.27 -1.65 16 12 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 13 C -0.12 -1.64 6.19 -25.51 -0.16 -1.80 16 14 C -0.13 -1.49 6.53 -24.96 -0.16 -1.65 16 15 C 0.14 1.41 3.21 -65.94 -0.21 1.20 16 16 H 0.10 1.18 7.62 -51.93 -0.40 0.78 16 17 N -0.71 -5.18 5.19 -51.88 -0.27 -5.45 16 18 C 0.50 4.54 7.84 -10.98 -0.09 4.45 16 19 O -0.51 -7.41 15.36 5.56 0.09 -7.33 16 20 C 0.10 0.49 6.94 -5.19 -0.04 0.45 16 21 N -0.28 -2.63 3.20 -62.44 -0.20 -2.83 16 22 C -0.05 -0.38 10.89 -17.05 -0.19 -0.56 16 23 C 0.01 0.10 6.88 -82.78 -0.57 -0.47 16 24 C -0.07 -0.52 6.33 -91.77 -0.58 -1.10 16 25 C -0.17 -0.79 10.02 -26.73 -0.27 -1.06 16 26 C -0.16 -1.04 10.23 -26.73 -0.27 -1.31 16 27 N -0.26 -3.60 12.41 33.29 0.41 -3.19 16 28 N -0.05 -0.69 12.13 60.35 0.73 0.05 16 29 C -0.12 -1.21 5.98 -25.08 -0.15 -1.36 16 30 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 31 H 0.36 8.23 5.41 -40.82 -0.22 8.01 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.26 7.61 -51.93 -0.40 0.87 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.40 1.52 8.54 -40.82 -0.35 1.17 16 39 H 0.14 0.12 8.07 -51.93 -0.42 -0.30 16 40 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.19 0.65 7.45 -52.49 -0.39 0.26 16 42 H 0.12 0.79 8.14 -51.92 -0.42 0.36 16 43 H 0.10 0.36 7.23 -51.93 -0.38 -0.01 16 44 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.08 0.68 7.73 -51.93 -0.40 0.28 16 LS Contribution 394.91 15.07 5.95 5.95 Total: -1.00 -38.60 394.91 -8.37 -46.97 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -7.61 Total: 3.66 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -3.22 Total: -8.90 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: 1.14 Total: -57.70 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: 0.09 Total: -7.33 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.34 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.60 -8.37 -46.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734479596.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.643 kcal (2) G-P(sol) polarization free energy of solvation -38.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds