Wall clock time and date at job start Tue Mar 31 2020 18:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99714 * 2 1 4 4 H 1.48502 * 109.47284 * 269.99990 * 3 2 1 5 5 H 1.48501 * 109.47164 * 29.99894 * 3 2 1 6 6 H 1.48503 * 109.46905 * 149.99863 * 3 2 1 7 7 C 1.38807 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00246 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00089 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00118 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47312 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.01449 * 306.38774 * 11 10 9 13 13 C 1.53874 * 110.03392 * 67.82983 * 11 10 9 14 14 C 1.54469 * 106.68518 * 119.44651 * 13 11 10 15 15 C 1.54889 * 104.09950 * 23.33969 * 14 13 11 16 16 H 1.09006 * 110.75482 * 80.70954 * 15 14 13 17 17 N 1.46496 * 110.75745 * 203.89226 * 15 14 13 18 18 C 1.34777 * 120.00258 * 271.07195 * 17 15 14 19 19 O 1.21279 * 120.00166 * 359.97438 * 18 17 15 20 20 C 1.50706 * 119.99762 * 179.97438 * 18 17 15 21 21 N 1.46500 * 109.46949 * 179.97438 * 20 18 17 22 22 C 1.35312 * 125.86942 * 124.71323 * 21 20 18 23 23 C 1.35349 * 106.17557 * 179.90794 * 22 21 20 24 24 C 1.50699 * 126.75117 * 180.12614 * 23 22 21 25 25 C 1.53002 * 117.50068 * 343.86822 * 24 23 22 26 26 C 1.52997 * 117.50270 * 275.24173 * 24 23 22 27 27 N 1.33774 * 106.49692 * 0.34849 * 23 22 21 28 28 N 1.28631 * 108.88538 * 359.77935 * 27 23 22 29 29 C 1.54261 * 110.03408 * 184.99997 * 11 10 9 30 30 H 0.97005 * 120.00391 * 359.97438 * 1 2 3 31 31 H 0.96996 * 119.99847 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47085 * 59.99572 * 10 9 7 33 33 H 1.08999 * 109.47195 * 299.99798 * 10 9 7 34 34 H 1.09007 * 110.02980 * 238.57011 * 13 11 10 35 35 H 1.09002 * 110.03029 * 359.95384 * 13 11 10 36 36 H 1.09001 * 110.39847 * 264.76090 * 14 13 11 37 37 H 1.08995 * 110.66249 * 142.05661 * 14 13 11 38 38 H 0.96999 * 119.99694 * 91.06585 * 17 15 14 39 39 H 1.09000 * 109.47318 * 299.99141 * 20 18 17 40 40 H 1.09000 * 109.47161 * 59.99772 * 20 18 17 41 41 H 1.07997 * 126.91137 * 0.02562 * 22 21 20 42 42 H 1.09009 * 115.54911 * 129.57710 * 24 23 22 43 43 H 1.08996 * 117.49373 * 359.97438 * 25 24 23 44 44 H 1.08999 * 117.50081 * 145.02107 * 25 24 23 45 45 H 1.08994 * 117.50491 * 214.97771 * 26 24 23 46 46 H 1.09004 * 117.49601 * 0.02562 * 26 24 23 47 47 H 1.09005 * 110.49216 * 98.42255 * 29 11 10 48 48 H 1.09004 * 110.48633 * 335.78106 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3796 -1.2020 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6164 -2.1912 0.0011 12 1 5.8721 -1.5256 -0.8234 13 6 6.0349 -1.5585 1.3398 14 6 7.0627 -2.5169 1.9811 15 6 7.6386 -3.3100 0.7818 16 1 8.4035 -2.7293 0.2661 17 7 8.1775 -4.5990 1.2225 18 6 9.4622 -4.6923 1.6190 19 8 10.1724 -3.7092 1.6105 20 6 10.0163 -6.0183 2.0728 21 7 11.4231 -5.8569 2.4483 22 6 11.9687 -6.1902 3.6409 23 6 13.2826 -5.8767 3.5553 24 6 14.3253 -6.0611 4.6275 25 6 13.8343 -6.2979 6.0572 26 6 14.4631 -4.9560 5.6766 27 7 13.4725 -5.3664 2.3334 28 7 12.3515 -5.3684 1.7025 29 6 6.3998 -3.5140 -0.1252 30 1 -0.4851 0.8401 0.0004 31 1 3.8646 -0.3620 0.0007 32 1 3.8492 -3.0422 -0.8891 33 1 3.8486 -3.0425 0.8908 34 1 6.4945 -0.5856 1.1655 35 1 5.1663 -1.4499 1.9892 36 1 6.5688 -3.1901 2.6818 37 1 7.8517 -1.9557 2.4816 38 1 7.6096 -5.3854 1.2290 39 1 9.4489 -6.3740 2.9329 40 1 9.9379 -6.7418 1.2613 41 1 11.4587 -6.6215 4.4896 42 1 15.2346 -6.5751 4.3156 43 1 12.7572 -6.3199 6.2222 44 1 14.4205 -6.9679 6.6862 45 1 15.4628 -4.7432 6.0552 46 1 13.7992 -4.0956 5.5914 47 1 6.7063 -3.6789 -1.1582 48 1 5.7981 -4.3494 0.2330 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734479596.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:32 Heat of formation + Delta-G solvation = 71.026652 kcal Electronic energy + Delta-G solvation = -27471.685340 eV Core-core repulsion = 23563.748877 eV Total energy + Delta-G solvation = -3907.936463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.29177 -41.09321 -39.38240 -38.16514 -36.62667 -35.45138 -34.91835 -33.29078 -31.70647 -30.60515 -30.09049 -28.56446 -26.11656 -25.05187 -23.85566 -23.73877 -23.02765 -21.95984 -21.73271 -21.26743 -20.67380 -19.53137 -18.64281 -18.58159 -17.33427 -17.06999 -16.80067 -16.53949 -16.32561 -16.26831 -15.71654 -15.59148 -15.33032 -15.04889 -14.73828 -14.53473 -14.32361 -13.87853 -13.71658 -13.42927 -13.34403 -13.02722 -12.90773 -12.60073 -12.50089 -12.30712 -12.18248 -12.15603 -12.03696 -11.86879 -11.77818 -11.73387 -11.63214 -11.42425 -11.31003 -11.20490 -10.96399 -10.81493 -10.14653 -9.99240 -9.28265 -8.03660 -5.36015 0.56381 1.25719 1.36665 1.38841 1.41825 1.46281 1.48205 2.07887 2.46942 2.86793 3.25737 3.28224 3.45097 3.50483 3.66031 3.72968 3.78777 3.90435 3.99275 4.00696 4.03865 4.06742 4.26630 4.31199 4.41038 4.42126 4.47602 4.55772 4.63058 4.72991 4.77521 4.84301 4.90579 4.97495 4.99314 5.10627 5.11394 5.18813 5.20300 5.22128 5.29523 5.36537 5.43822 5.52240 5.56920 5.75982 6.20930 6.43816 7.08128 7.12774 7.51249 7.85978 8.03418 9.17810 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.028117 B = 0.001743 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.593182 B =16060.738028 C =16402.033621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.063 4.063 3 Si 0.951 3.049 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.253 1.253 7 C -0.233 4.233 8 H 0.059 0.941 9 N -0.760 5.760 10 C 0.162 3.838 11 C -0.094 4.094 12 H 0.070 0.930 13 C -0.119 4.119 14 C -0.122 4.122 15 C 0.148 3.852 16 H 0.075 0.925 17 N -0.697 5.697 18 C 0.498 3.502 19 O -0.570 6.570 20 C 0.093 3.907 21 N -0.279 5.279 22 C -0.031 4.031 23 C -0.011 4.011 24 C -0.091 4.091 25 C -0.141 4.141 26 C -0.178 4.178 27 N -0.312 5.312 28 N -0.102 5.102 29 C -0.106 4.106 30 H 0.257 0.743 31 H 0.364 0.636 32 H 0.027 0.973 33 H 0.030 0.970 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.053 0.947 38 H 0.424 0.576 39 H 0.190 0.810 40 H 0.163 0.837 41 H 0.237 0.763 42 H 0.121 0.879 43 H 0.110 0.890 44 H 0.123 0.877 45 H 0.111 0.889 46 H 0.078 0.922 47 H 0.085 0.915 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.737 -20.676 12.052 35.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.255 4.255 3 Si 0.778 3.222 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.178 1.178 7 C -0.364 4.364 8 H 0.077 0.923 9 N -0.405 5.405 10 C 0.036 3.964 11 C -0.114 4.114 12 H 0.089 0.911 13 C -0.158 4.158 14 C -0.160 4.160 15 C 0.042 3.958 16 H 0.093 0.907 17 N -0.350 5.350 18 C 0.283 3.717 19 O -0.448 6.448 20 C -0.030 4.030 21 N -0.073 5.073 22 C -0.182 4.182 23 C -0.149 4.149 24 C -0.111 4.111 25 C -0.178 4.178 26 C -0.216 4.216 27 N -0.178 5.178 28 N -0.081 5.081 29 C -0.144 4.144 30 H 0.066 0.934 31 H 0.197 0.803 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.263 0.737 39 H 0.207 0.793 40 H 0.181 0.819 41 H 0.254 0.746 42 H 0.139 0.861 43 H 0.129 0.871 44 H 0.141 0.859 45 H 0.129 0.871 46 H 0.097 0.903 47 H 0.103 0.897 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 27.342 -19.495 10.608 35.216 hybrid contribution -0.726 0.972 0.558 1.336 sum 26.616 -18.523 11.166 34.296 Atomic orbital electron populations 1.69876 1.07044 1.26592 1.59882 1.25470 0.96078 1.01096 1.02852 0.85467 0.78691 0.79942 0.78057 1.20581 1.22291 1.17756 1.19071 0.82850 0.93479 1.40969 0.92278 1.42776 1.02432 1.04437 1.90893 1.20913 0.89983 0.87126 0.98336 1.21833 0.93901 0.97817 0.97812 0.91132 1.22158 0.98563 0.98601 0.96454 1.22655 0.97432 0.98172 0.97778 1.21807 0.95085 0.84234 0.94625 0.90714 1.45669 1.10852 1.12622 1.65860 1.20890 0.82484 0.90717 0.77612 1.90851 1.59382 1.40057 1.54500 1.22389 0.75441 0.96348 1.08826 1.47047 1.10072 1.39570 1.10623 1.23960 0.94570 1.07540 0.92093 1.21577 0.94809 1.04067 0.94430 1.20087 0.97916 1.05944 0.87150 1.23164 1.02531 0.98371 0.93743 1.23041 1.03396 0.93066 1.02060 1.75008 1.17197 1.18498 1.07118 1.78373 0.92106 1.16750 1.20846 1.22495 0.94261 0.97290 1.00353 0.93396 0.80276 0.95519 0.95220 0.92563 0.92263 0.89972 0.92808 0.73717 0.79263 0.81946 0.74635 0.86127 0.87146 0.85917 0.87116 0.90341 0.89657 0.88504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.84 13.97 21.65 0.30 -62.53 16 2 C -0.06 -3.73 5.50 84.86 0.47 -3.27 16 3 Si 0.95 45.61 27.74 68.60 1.90 47.51 16 4 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.25 -10.99 6.52 99.48 0.65 -10.34 16 7 C -0.23 -13.13 10.47 84.03 0.88 -12.25 16 8 H 0.06 3.63 8.06 -2.91 -0.02 3.60 16 9 N -0.76 -34.60 5.19 -343.46 -1.78 -36.38 16 10 C 0.16 5.61 5.27 86.38 0.46 6.07 16 11 C -0.09 -2.44 2.96 -10.07 -0.03 -2.47 16 12 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 13 C -0.12 -3.14 6.19 31.39 0.19 -2.94 16 14 C -0.12 -2.55 6.53 31.74 0.21 -2.34 16 15 C 0.15 2.67 3.21 46.28 0.15 2.82 16 16 H 0.07 1.75 7.62 -2.38 -0.02 1.74 16 17 N -0.70 -7.80 5.19 -436.43 -2.27 -10.07 16 18 C 0.50 7.84 7.84 87.66 0.69 8.53 16 19 O -0.57 -16.53 15.36 -3.03 -0.05 -16.57 16 20 C 0.09 0.58 6.94 85.63 0.59 1.17 16 21 N -0.28 -4.62 3.20 -351.46 -1.12 -5.74 16 22 C -0.03 -0.40 10.89 83.49 0.91 0.51 16 23 C -0.01 -0.21 6.88 41.60 0.29 0.08 16 24 C -0.09 -1.22 6.33 -11.54 -0.07 -1.29 16 25 C -0.14 -0.90 10.02 30.60 0.31 -0.59 16 26 C -0.18 -2.10 10.23 30.59 0.31 -1.78 16 27 N -0.31 -8.84 12.41 -48.60 -0.60 -9.44 16 28 N -0.10 -2.78 12.13 37.02 0.45 -2.33 16 29 C -0.11 -1.83 5.98 31.67 0.19 -1.64 16 30 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 31 H 0.36 16.07 5.41 -92.71 -0.50 15.57 16 32 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.06 1.80 7.61 -2.39 -0.02 1.79 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.42 1.17 8.54 -92.71 -0.79 0.38 16 39 H 0.19 -0.90 8.07 -2.39 -0.02 -0.92 16 40 H 0.16 0.03 8.14 -2.39 -0.02 0.01 16 41 H 0.24 0.35 7.45 -2.91 -0.02 0.33 16 42 H 0.12 1.54 8.14 -2.38 -0.02 1.52 16 43 H 0.11 0.38 7.23 -2.39 -0.02 0.36 16 44 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 45 H 0.11 1.03 8.14 -2.39 -0.02 1.02 16 46 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 48 H 0.10 1.32 7.73 -2.39 -0.02 1.30 16 Total: -1.00 -90.95 394.91 1.99 -88.96 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -0.37 Total: 16.01 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 5.54 Total: -9.41 kcal Atomic # 7 Polarization: -121.48 SS G_CDS: -5.03 Total: -126.50 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.05 Total: -16.57 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.90 Total: 47.51 kcal Total: -90.95 1.99 -88.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734479596.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.983 kcal (2) G-P(sol) polarization free energy of solvation -90.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds