Wall clock time and date at job start Tue Mar 31 2020 18:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99973 * 2 1 4 4 H 1.48505 * 109.47163 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47304 * 300.00448 * 3 2 1 6 6 H 1.48503 * 109.47052 * 60.00684 * 3 2 1 7 7 C 1.38814 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00300 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99360 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99531 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46662 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.01561 * 54.94812 * 11 10 9 13 13 C 1.53869 * 110.03587 * 293.54771 * 11 10 9 14 14 C 1.54270 * 106.63967 * 240.69205 * 13 11 10 15 15 C 1.54961 * 104.16191 * 336.44607 * 14 13 11 16 16 H 1.09001 * 110.71970 * 279.57802 * 15 14 13 17 17 N 1.46500 * 110.92632 * 156.29508 * 15 14 13 18 18 C 1.34773 * 119.99760 * 91.53985 * 17 15 14 19 19 O 1.21276 * 120.00389 * 0.02562 * 18 17 15 20 20 C 1.50703 * 119.99775 * 180.02562 * 18 17 15 21 21 N 1.46497 * 109.47156 * 179.97438 * 20 18 17 22 22 C 1.35314 * 125.86714 * 124.71181 * 21 20 18 23 23 C 1.35359 * 106.17445 * 179.90532 * 22 21 20 24 24 C 1.50700 * 126.74913 * 180.12612 * 23 22 21 25 25 C 1.52998 * 117.50058 * 343.91750 * 24 23 22 26 26 C 1.53001 * 117.49787 * 275.29405 * 24 23 22 27 27 N 1.33767 * 106.49392 * 0.35385 * 23 22 21 28 28 N 1.28633 * 108.88993 * 359.77202 * 27 23 22 29 29 C 1.54268 * 110.02861 * 176.37799 * 11 10 9 30 30 H 0.96995 * 119.99835 * 359.97438 * 1 2 3 31 31 H 0.96991 * 120.00341 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46826 * 60.00094 * 10 9 7 33 33 H 1.08996 * 109.47083 * 300.00318 * 10 9 7 34 34 H 1.09002 * 110.03268 * 0.02562 * 13 11 10 35 35 H 1.08995 * 110.03391 * 121.38598 * 13 11 10 36 36 H 1.08997 * 110.48585 * 95.09409 * 14 13 11 37 37 H 1.09002 * 110.48442 * 217.73292 * 14 13 11 38 38 H 0.96997 * 119.99821 * 271.54278 * 17 15 14 39 39 H 1.09000 * 109.47108 * 299.99805 * 20 18 17 40 40 H 1.09001 * 109.47323 * 59.99448 * 20 18 17 41 41 H 1.08003 * 126.91667 * 0.02562 * 22 21 20 42 42 H 1.08999 * 115.54537 * 129.62854 * 24 23 22 43 43 H 1.08999 * 117.49787 * 359.97438 * 25 24 23 44 44 H 1.08998 * 117.49749 * 145.02505 * 25 24 23 45 45 H 1.09002 * 117.49865 * 214.98059 * 26 24 23 46 46 H 1.09001 * 117.50014 * 0.02562 * 26 24 23 47 47 H 1.08997 * 110.48788 * 261.57517 * 29 11 10 48 48 H 1.09001 * 110.48482 * 24.22197 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 0.0001 12 1 0.3740 -4.7212 -0.8381 13 6 0.2828 -4.8447 1.3256 14 6 0.5903 -6.2007 1.9939 15 6 1.0075 -7.1178 0.8165 16 1 0.1297 -7.4955 0.2921 17 7 1.8451 -8.2241 1.2863 18 6 1.2788 -9.3942 1.6418 19 8 0.0759 -9.5316 1.5723 20 6 2.1404 -10.5321 2.1256 21 7 1.2936 -11.6833 2.4476 22 6 1.4241 -12.9304 1.9391 23 6 0.4437 -13.6728 2.5048 24 6 0.1673 -15.1346 2.2648 25 6 0.8065 -15.7818 1.0346 26 6 -0.6974 -15.5010 1.0569 27 7 -0.2345 -12.8523 3.3149 28 7 0.2940 -11.6809 3.2585 29 6 1.8198 -6.1613 -0.0914 30 1 -0.4849 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6847 -3.7145 0.8895 33 1 2.6848 -3.7145 -0.8905 34 1 0.6118 -4.0282 1.9683 35 1 -0.7861 -4.7584 1.1308 36 1 1.4091 -6.0981 2.7060 37 1 -0.2989 -6.5930 2.4876 38 1 2.8073 -8.1143 1.3416 39 1 2.8489 -10.8088 1.3448 40 1 2.6854 -10.2216 3.0171 41 1 2.1631 -13.2665 1.2268 42 1 0.0658 -15.7471 3.1607 43 1 1.4267 -15.1502 0.3987 44 1 1.1258 -16.8204 1.1211 45 1 -1.3673 -16.3549 1.1580 46 1 -1.0659 -14.6848 0.4355 47 1 1.8277 -6.5254 -1.1188 48 1 2.8375 -6.0521 0.2834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734479599.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:36 Heat of formation + Delta-G solvation = 95.636607 kcal Electronic energy + Delta-G solvation = -27358.811745 eV Core-core repulsion = 23451.942450 eV Total energy + Delta-G solvation = -3906.869295 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.59040 -40.25127 -38.25952 -37.66629 -35.01895 -34.74672 -33.56481 -31.18497 -31.03657 -29.46655 -28.82322 -27.36912 -24.48864 -24.42292 -23.20720 -22.44671 -22.25542 -21.28516 -20.81861 -20.55947 -19.22222 -17.98553 -17.94115 -17.09452 -16.67593 -16.09168 -15.86375 -15.60772 -15.53503 -15.01046 -14.81061 -14.62214 -14.20229 -13.58660 -13.46624 -13.31348 -13.04962 -12.84233 -12.74724 -12.13877 -11.99815 -11.89225 -11.84221 -11.60665 -11.51384 -11.16211 -11.14603 -10.89878 -10.85235 -10.69465 -10.67743 -10.56889 -10.41288 -10.13426 -10.04113 -9.90894 -9.69558 -9.34533 -9.29893 -8.88667 -6.92636 -5.77558 -3.06225 1.22150 1.77640 2.10255 2.22711 2.75002 3.34099 3.41952 3.47226 3.49776 3.77334 4.04960 4.11269 4.31983 4.37089 4.43233 4.50601 4.55246 4.63268 4.75897 4.79191 4.94184 4.95692 5.17973 5.37928 5.42429 5.43006 5.50874 5.53968 5.55847 5.62885 5.64517 5.72379 5.77515 5.81606 5.83483 6.00464 6.09098 6.12419 6.23532 6.27435 6.34987 6.50641 6.64381 6.78950 6.90102 7.06669 7.68745 7.75849 8.26842 8.41445 9.52655 10.11357 10.45810 11.45335 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.042544 B = 0.001593 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.979124 B =17569.609346 C =17654.527332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.161 3.839 11 C -0.096 4.096 12 H 0.075 0.925 13 C -0.116 4.116 14 C -0.132 4.132 15 C 0.139 3.861 16 H 0.097 0.903 17 N -0.714 5.714 18 C 0.500 3.500 19 O -0.507 6.507 20 C 0.095 3.905 21 N -0.282 5.282 22 C -0.050 4.050 23 C 0.010 3.990 24 C -0.072 4.072 25 C -0.170 4.170 26 C -0.165 4.165 27 N -0.264 5.264 28 N -0.049 5.049 29 C -0.119 4.119 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.018 0.982 33 H 0.016 0.984 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.402 0.598 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.189 0.811 42 H 0.122 0.878 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.096 0.904 47 H 0.069 0.931 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.899 -31.839 1.937 32.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.033 3.967 11 C -0.115 4.115 12 H 0.093 0.907 13 C -0.154 4.154 14 C -0.170 4.170 15 C 0.035 3.965 16 H 0.115 0.885 17 N -0.366 5.366 18 C 0.282 3.718 19 O -0.381 6.381 20 C -0.030 4.030 21 N -0.075 5.075 22 C -0.200 4.200 23 C -0.127 4.127 24 C -0.092 4.092 25 C -0.208 4.208 26 C -0.202 4.202 27 N -0.131 5.131 28 N -0.029 5.029 29 C -0.158 4.158 30 H 0.064 0.936 31 H 0.218 0.782 32 H 0.036 0.964 33 H 0.034 0.966 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.237 0.763 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.206 0.794 42 H 0.140 0.860 43 H 0.114 0.886 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.114 0.886 47 H 0.088 0.912 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.309 -30.926 2.849 31.691 hybrid contribution 1.453 0.643 -0.775 1.768 sum 7.762 -30.282 2.074 31.330 Atomic orbital electron populations 1.69668 1.05103 1.25534 1.57789 1.24744 0.95515 0.97690 1.03060 0.86130 0.78744 0.84184 0.77202 1.20597 1.21872 1.21874 1.19273 0.91029 0.84231 1.42606 0.91205 1.42377 1.05932 0.99945 1.89406 1.20727 0.92999 0.85395 0.97532 1.21873 0.97720 0.93720 0.98205 0.90691 1.22129 1.00244 0.96479 0.96514 1.22744 1.01454 0.95533 0.97290 1.22169 0.94009 0.84957 0.95381 0.88500 1.45905 1.11082 1.12642 1.66984 1.20194 0.89049 0.83715 0.78827 1.90858 1.14106 1.81682 1.51425 1.21901 0.92018 0.84033 1.05068 1.46720 1.22439 1.08634 1.29716 1.23233 1.05530 0.84860 1.06334 1.20999 0.95745 0.96336 0.99622 1.19995 1.06321 0.88788 0.94099 1.23018 0.96252 1.01758 0.99740 1.23016 0.93590 1.03476 1.00162 1.75101 1.22495 0.96075 1.19402 1.78489 0.97928 1.16223 1.10224 1.22611 0.99279 0.94763 0.99154 0.93555 0.78191 0.96378 0.96588 0.90158 0.91844 0.91472 0.91518 0.76347 0.84672 0.85140 0.79383 0.86012 0.88642 0.87911 0.88001 0.88589 0.91194 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.24 -6.68 9.99 -15.05 -0.15 -6.83 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.24 5.34 -59.91 -0.32 -18.56 16 10 C 0.16 3.08 5.29 -4.04 -0.02 3.06 16 11 C -0.10 -1.45 2.98 -89.50 -0.27 -1.71 16 12 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 13 C -0.12 -1.75 6.13 -25.61 -0.16 -1.91 16 14 C -0.13 -1.66 6.53 -25.03 -0.16 -1.82 16 15 C 0.14 1.52 3.26 -65.90 -0.21 1.30 16 16 H 0.10 1.24 7.55 -51.93 -0.39 0.85 16 17 N -0.71 -5.60 5.19 -51.84 -0.27 -5.87 16 18 C 0.50 4.78 7.84 -10.99 -0.09 4.69 16 19 O -0.51 -7.68 15.32 5.56 0.09 -7.59 16 20 C 0.10 0.52 6.94 -5.19 -0.04 0.49 16 21 N -0.28 -2.71 3.20 -62.44 -0.20 -2.91 16 22 C -0.05 -0.39 10.89 -17.04 -0.19 -0.58 16 23 C 0.01 0.10 6.88 -82.78 -0.57 -0.47 16 24 C -0.07 -0.52 6.33 -91.77 -0.58 -1.10 16 25 C -0.17 -0.79 10.02 -26.73 -0.27 -1.06 16 26 C -0.16 -1.04 10.23 -26.73 -0.27 -1.31 16 27 N -0.26 -3.69 12.41 33.29 0.41 -3.28 16 28 N -0.05 -0.69 12.13 60.35 0.73 0.05 16 29 C -0.12 -1.31 5.99 -25.07 -0.15 -1.46 16 30 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.38 10.12 7.50 -40.82 -0.31 9.81 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 1.41 7.58 -51.93 -0.39 1.02 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.40 1.73 8.57 -40.82 -0.35 1.38 16 39 H 0.14 0.13 8.07 -51.93 -0.42 -0.29 16 40 H 0.13 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.19 0.66 7.45 -52.48 -0.39 0.26 16 42 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.10 0.36 7.22 -51.93 -0.38 -0.02 16 44 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.07 0.72 7.73 -51.93 -0.40 0.31 16 LS Contribution 397.83 15.07 6.00 6.00 Total: -1.00 -37.89 397.83 -8.73 -46.62 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -7.65 Total: 4.95 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -3.22 Total: -9.21 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 1.08 Total: -58.04 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: 0.09 Total: -7.59 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.89 -8.73 -46.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734479599.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.258 kcal (2) G-P(sol) polarization free energy of solvation -37.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds