Wall clock time and date at job start Tue Mar 31 2020 18:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99973 * 2 1 4 4 H 1.48505 * 109.47163 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47304 * 300.00448 * 3 2 1 6 6 H 1.48503 * 109.47052 * 60.00684 * 3 2 1 7 7 C 1.38814 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00300 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99360 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99531 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46662 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.01561 * 54.94812 * 11 10 9 13 13 C 1.53869 * 110.03587 * 293.54771 * 11 10 9 14 14 C 1.54270 * 106.63967 * 240.69205 * 13 11 10 15 15 C 1.54961 * 104.16191 * 336.44607 * 14 13 11 16 16 H 1.09001 * 110.71970 * 279.57802 * 15 14 13 17 17 N 1.46500 * 110.92632 * 156.29508 * 15 14 13 18 18 C 1.34773 * 119.99760 * 91.53985 * 17 15 14 19 19 O 1.21276 * 120.00389 * 0.02562 * 18 17 15 20 20 C 1.50703 * 119.99775 * 180.02562 * 18 17 15 21 21 N 1.46497 * 109.47156 * 179.97438 * 20 18 17 22 22 C 1.35314 * 125.86714 * 124.71181 * 21 20 18 23 23 C 1.35359 * 106.17445 * 179.90532 * 22 21 20 24 24 C 1.50700 * 126.74913 * 180.12612 * 23 22 21 25 25 C 1.52998 * 117.50058 * 343.91750 * 24 23 22 26 26 C 1.53001 * 117.49787 * 275.29405 * 24 23 22 27 27 N 1.33767 * 106.49392 * 0.35385 * 23 22 21 28 28 N 1.28633 * 108.88993 * 359.77202 * 27 23 22 29 29 C 1.54268 * 110.02861 * 176.37799 * 11 10 9 30 30 H 0.96995 * 119.99835 * 359.97438 * 1 2 3 31 31 H 0.96991 * 120.00341 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46826 * 60.00094 * 10 9 7 33 33 H 1.08996 * 109.47083 * 300.00318 * 10 9 7 34 34 H 1.09002 * 110.03268 * 0.02562 * 13 11 10 35 35 H 1.08995 * 110.03391 * 121.38598 * 13 11 10 36 36 H 1.08997 * 110.48585 * 95.09409 * 14 13 11 37 37 H 1.09002 * 110.48442 * 217.73292 * 14 13 11 38 38 H 0.96997 * 119.99821 * 271.54278 * 17 15 14 39 39 H 1.09000 * 109.47108 * 299.99805 * 20 18 17 40 40 H 1.09001 * 109.47323 * 59.99448 * 20 18 17 41 41 H 1.08003 * 126.91667 * 0.02562 * 22 21 20 42 42 H 1.08999 * 115.54537 * 129.62854 * 24 23 22 43 43 H 1.08999 * 117.49787 * 359.97438 * 25 24 23 44 44 H 1.08998 * 117.49749 * 145.02505 * 25 24 23 45 45 H 1.09002 * 117.49865 * 214.98059 * 26 24 23 46 46 H 1.09001 * 117.50014 * 0.02562 * 26 24 23 47 47 H 1.08997 * 110.48788 * 261.57517 * 29 11 10 48 48 H 1.09001 * 110.48482 * 24.22197 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 0.0001 12 1 0.3740 -4.7212 -0.8381 13 6 0.2828 -4.8447 1.3256 14 6 0.5903 -6.2007 1.9939 15 6 1.0075 -7.1178 0.8165 16 1 0.1297 -7.4955 0.2921 17 7 1.8451 -8.2241 1.2863 18 6 1.2788 -9.3942 1.6418 19 8 0.0759 -9.5316 1.5723 20 6 2.1404 -10.5321 2.1256 21 7 1.2936 -11.6833 2.4476 22 6 1.4241 -12.9304 1.9391 23 6 0.4437 -13.6728 2.5048 24 6 0.1673 -15.1346 2.2648 25 6 0.8065 -15.7818 1.0346 26 6 -0.6974 -15.5010 1.0569 27 7 -0.2345 -12.8523 3.3149 28 7 0.2940 -11.6809 3.2585 29 6 1.8198 -6.1613 -0.0914 30 1 -0.4849 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6847 -3.7145 0.8895 33 1 2.6848 -3.7145 -0.8905 34 1 0.6118 -4.0282 1.9683 35 1 -0.7861 -4.7584 1.1308 36 1 1.4091 -6.0981 2.7060 37 1 -0.2989 -6.5930 2.4876 38 1 2.8073 -8.1143 1.3416 39 1 2.8489 -10.8088 1.3448 40 1 2.6854 -10.2216 3.0171 41 1 2.1631 -13.2665 1.2268 42 1 0.0658 -15.7471 3.1607 43 1 1.4267 -15.1502 0.3987 44 1 1.1258 -16.8204 1.1211 45 1 -1.3673 -16.3549 1.1580 46 1 -1.0659 -14.6848 0.4355 47 1 1.8277 -6.5254 -1.1188 48 1 2.8375 -6.0521 0.2834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734479599.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:35 Heat of formation + Delta-G solvation = 67.873678 kcal Electronic energy + Delta-G solvation = -27360.015636 eV Core-core repulsion = 23451.942450 eV Total energy + Delta-G solvation = -3908.073186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.28368 -41.08461 -39.35018 -38.15441 -36.49302 -35.44629 -34.90772 -32.96503 -31.69617 -30.38060 -30.04908 -28.45993 -26.15353 -25.04128 -24.00719 -23.82485 -23.01828 -21.95422 -21.73184 -21.23775 -20.49450 -19.12296 -18.62266 -18.55983 -17.44134 -16.98613 -16.76241 -16.53750 -16.29269 -16.26212 -15.66501 -15.37109 -15.32842 -15.13477 -14.83915 -14.48148 -14.28818 -13.75088 -13.42112 -13.31809 -13.30211 -12.93389 -12.83792 -12.55631 -12.54423 -12.29514 -12.17217 -12.12910 -12.09833 -11.86116 -11.75367 -11.70977 -11.53696 -11.41416 -11.29919 -11.19495 -10.92461 -10.80457 -10.14305 -9.98299 -8.97985 -7.94853 -5.23296 0.57439 1.26590 1.42154 1.47201 1.48036 1.49298 1.58069 2.08392 2.56404 2.87912 3.27007 3.39200 3.47567 3.57163 3.67798 3.77490 3.85767 3.91432 4.00208 4.04522 4.07865 4.20072 4.27679 4.33747 4.41620 4.45031 4.49368 4.57713 4.67275 4.78146 4.78858 4.85525 4.91450 4.98531 5.00090 5.10656 5.14770 5.19929 5.23080 5.23912 5.30724 5.40073 5.44655 5.51694 5.54581 5.58214 6.27778 6.44528 7.13691 7.33789 7.52428 8.12193 8.33559 9.29131 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.042544 B = 0.001593 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.979124 B =17569.609346 C =17654.527332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.243 4.243 8 H 0.079 0.921 9 N -0.747 5.747 10 C 0.160 3.840 11 C -0.091 4.091 12 H 0.061 0.939 13 C -0.113 4.113 14 C -0.123 4.123 15 C 0.150 3.850 16 H 0.076 0.924 17 N -0.696 5.696 18 C 0.497 3.503 19 O -0.571 6.571 20 C 0.094 3.906 21 N -0.280 5.280 22 C -0.030 4.030 23 C -0.011 4.011 24 C -0.092 4.092 25 C -0.139 4.139 26 C -0.178 4.178 27 N -0.313 5.313 28 N -0.104 5.104 29 C -0.103 4.103 30 H 0.250 0.750 31 H 0.372 0.628 32 H 0.025 0.975 33 H 0.024 0.976 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.050 0.950 38 H 0.424 0.576 39 H 0.194 0.806 40 H 0.161 0.839 41 H 0.240 0.760 42 H 0.120 0.880 43 H 0.111 0.889 44 H 0.123 0.877 45 H 0.110 0.890 46 H 0.078 0.922 47 H 0.087 0.913 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.033 -33.834 0.827 35.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.375 4.375 8 H 0.096 0.904 9 N -0.390 5.390 10 C 0.034 3.966 11 C -0.110 4.110 12 H 0.080 0.920 13 C -0.152 4.152 14 C -0.162 4.162 15 C 0.044 3.956 16 H 0.094 0.906 17 N -0.349 5.349 18 C 0.282 3.718 19 O -0.449 6.449 20 C -0.029 4.029 21 N -0.073 5.073 22 C -0.181 4.181 23 C -0.149 4.149 24 C -0.112 4.112 25 C -0.177 4.177 26 C -0.216 4.216 27 N -0.179 5.179 28 N -0.083 5.083 29 C -0.141 4.141 30 H 0.059 0.941 31 H 0.204 0.796 32 H 0.043 0.957 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.263 0.737 39 H 0.211 0.789 40 H 0.179 0.821 41 H 0.256 0.744 42 H 0.138 0.862 43 H 0.130 0.870 44 H 0.141 0.859 45 H 0.128 0.872 46 H 0.097 0.903 47 H 0.105 0.895 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.529 -32.931 1.755 34.618 hybrid contribution 0.193 1.213 -0.452 1.309 sum 10.723 -31.719 1.302 33.507 Atomic orbital electron populations 1.69833 1.06733 1.25912 1.59798 1.25587 0.96363 1.01212 1.03919 0.85071 0.78367 0.79777 0.76538 1.18716 1.22165 1.22267 1.19719 0.91610 0.85400 1.40736 0.90358 1.42639 1.05662 1.01384 1.89301 1.20924 0.93584 0.84353 0.97763 1.21776 0.97073 0.94768 0.97390 0.91997 1.22027 0.99409 0.97152 0.96585 1.22647 1.01324 0.94252 0.97979 1.21782 0.94003 0.85533 0.94261 0.90599 1.45643 1.11899 1.11359 1.65978 1.20926 0.88662 0.84681 0.77499 1.90854 1.17130 1.82822 1.54065 1.22386 0.90992 0.81438 1.08100 1.47056 1.21587 1.10145 1.28531 1.23984 1.05029 0.83708 1.05352 1.21597 0.96222 0.97495 0.99610 1.20083 1.08458 0.87688 0.94954 1.23165 0.94627 1.02790 0.97082 1.23041 0.95441 1.03351 0.99717 1.75010 1.24309 0.97055 1.21548 1.78396 1.00327 1.16603 1.12952 1.22490 0.99585 0.91681 1.00333 0.94136 0.79614 0.95674 0.95850 0.92853 0.93281 0.90128 0.93100 0.73670 0.78925 0.82141 0.74423 0.86226 0.87033 0.85915 0.87159 0.90311 0.89484 0.88390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.14 13.06 21.65 0.28 -59.86 16 2 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 3 Si 0.97 46.03 29.55 68.60 2.03 48.06 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 6 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 7 C -0.24 -13.46 9.99 84.03 0.84 -12.62 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.75 -37.58 5.34 -343.44 -1.83 -39.41 16 10 C 0.16 5.96 5.29 86.38 0.46 6.41 16 11 C -0.09 -2.68 2.98 -10.07 -0.03 -2.71 16 12 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 13 C -0.11 -3.54 6.13 31.32 0.19 -3.34 16 14 C -0.12 -3.07 6.53 31.70 0.21 -2.86 16 15 C 0.15 3.03 3.26 46.31 0.15 3.18 16 16 H 0.08 1.93 7.55 -2.39 -0.02 1.91 16 17 N -0.70 -8.70 5.19 -436.31 -2.26 -10.96 16 18 C 0.50 8.41 7.84 87.66 0.69 9.09 16 19 O -0.57 -17.37 15.32 -3.02 -0.05 -17.42 16 20 C 0.09 0.65 6.94 85.63 0.59 1.24 16 21 N -0.28 -4.81 3.20 -351.46 -1.12 -5.93 16 22 C -0.03 -0.39 10.89 83.49 0.91 0.52 16 23 C -0.01 -0.22 6.88 41.60 0.29 0.07 16 24 C -0.09 -1.25 6.33 -11.54 -0.07 -1.33 16 25 C -0.14 -0.87 10.02 30.59 0.31 -0.57 16 26 C -0.18 -2.11 10.23 30.59 0.31 -1.79 16 27 N -0.31 -9.16 12.41 -48.60 -0.60 -9.76 16 28 N -0.10 -2.96 12.13 37.02 0.45 -2.51 16 29 C -0.10 -1.95 5.99 31.67 0.19 -1.77 16 30 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 31 H 0.37 20.24 7.50 -92.72 -0.70 19.55 16 32 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.05 1.94 7.58 -2.39 -0.02 1.92 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.42 1.56 8.57 -92.71 -0.79 0.77 16 39 H 0.19 -0.94 8.07 -2.39 -0.02 -0.96 16 40 H 0.16 0.21 8.14 -2.39 -0.02 0.19 16 41 H 0.24 0.29 7.45 -2.91 -0.02 0.27 16 42 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.11 0.34 7.22 -2.39 -0.02 0.32 16 44 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 45 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 47 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.10 1.45 7.73 -2.39 -0.02 1.43 16 Total: -1.00 -89.88 397.83 1.88 -88.01 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -0.51 Total: 20.35 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: 5.50 Total: -10.56 kcal Atomic # 7 Polarization: -123.34 SS G_CDS: -5.09 Total: -128.44 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.05 Total: -17.42 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -89.88 1.88 -88.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734479599.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.879 kcal (2) G-P(sol) polarization free energy of solvation -89.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds