Wall clock time and date at job start Tue Mar 31 2020 18:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86809 * 119.99881 * 2 1 4 4 H 1.48498 * 109.46903 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46911 * 300.00121 * 3 2 1 6 6 H 1.48494 * 109.46897 * 59.99999 * 3 2 1 7 7 C 1.38810 * 120.00409 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00410 * 197.03100 * 7 2 1 9 9 N 1.36938 * 120.00111 * 17.02318 * 7 2 1 10 10 C 1.47073 * 120.88413 * 206.58049 * 9 7 2 11 11 C 1.53241 * 108.52407 * 231.16210 * 10 9 7 12 12 N 1.46894 * 109.33999 * 306.17486 * 11 10 9 13 13 C 1.46902 * 111.00043 * 187.24872 * 12 11 10 14 14 C 1.53002 * 109.47122 * 169.99741 * 13 12 11 15 15 N 1.46506 * 109.46847 * 180.02562 * 14 13 12 16 16 C 1.34776 * 119.99615 * 179.72618 * 15 14 13 17 17 O 1.21277 * 120.00146 * 0.27633 * 16 15 14 18 18 C 1.50705 * 119.99784 * 180.27777 * 16 15 14 19 19 C 1.52995 * 109.47197 * 180.02562 * 18 16 15 20 20 C 1.50699 * 109.47501 * 180.02562 * 19 18 16 21 21 C 1.38590 * 120.79792 * 269.72481 * 20 19 18 22 22 N 1.32336 * 119.10495 * 179.71546 * 21 20 19 23 23 C 1.31804 * 120.81375 * 0.56318 * 22 21 20 24 24 N 1.31793 * 121.75647 * 359.70513 * 23 22 21 25 25 C 1.32331 * 120.81554 * 0.02562 * 24 23 22 26 26 C 1.46902 * 111.27008 * 63.10446 * 12 11 10 27 27 C 1.47082 * 120.87825 * 26.56369 * 9 7 2 28 28 H 0.96995 * 120.00441 * 359.97438 * 1 2 3 29 29 H 1.09010 * 109.62666 * 111.45934 * 10 9 7 30 30 H 1.08992 * 109.79343 * 350.97375 * 10 9 7 31 31 H 1.09000 * 109.49487 * 186.21243 * 11 10 9 32 32 H 1.09004 * 109.48857 * 66.13149 * 11 10 9 33 33 H 1.09008 * 109.46710 * 49.99885 * 13 12 11 34 34 H 1.09002 * 109.47103 * 290.00292 * 13 12 11 35 35 H 1.08994 * 109.47052 * 60.00578 * 14 13 12 36 36 H 1.08995 * 109.47389 * 299.99878 * 14 13 12 37 37 H 0.96994 * 119.99741 * 0.02562 * 15 14 13 38 38 H 1.09003 * 109.46852 * 300.00411 * 18 16 15 39 39 H 1.08998 * 109.46693 * 59.99941 * 18 16 15 40 40 H 1.09009 * 109.46705 * 299.99927 * 19 18 16 41 41 H 1.08996 * 109.47327 * 59.99294 * 19 18 16 42 42 H 1.07998 * 120.45101 * 359.97438 * 21 20 19 43 43 H 1.07997 * 119.12020 * 179.72826 * 23 22 21 44 44 H 1.08003 * 120.44930 * 179.97438 * 25 24 23 45 45 H 1.08991 * 109.49565 * 56.85299 * 26 12 11 46 46 H 1.09004 * 109.49503 * 176.93836 * 26 12 11 47 47 H 1.08998 * 109.62881 * 248.54695 * 27 9 7 48 48 H 1.09008 * 109.63123 * 9.12281 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0548 -1.2227 0.2734 9 7 1.3707 -2.3619 -0.3482 10 6 1.8311 -3.6610 0.1650 11 6 2.0026 -4.6191 -1.0186 12 7 0.7551 -4.6639 -1.7929 13 6 0.8187 -5.6979 -2.8344 14 6 -0.5688 -5.8872 -3.4506 15 7 -0.5054 -6.9189 -4.4889 16 6 -1.6180 -7.2599 -5.1688 17 8 -2.6706 -6.7092 -4.9246 18 6 -1.5541 -8.3256 -6.2325 19 6 -2.9426 -8.5183 -6.8454 20 6 -2.8789 -9.5844 -7.9086 21 6 -2.6089 -9.2559 -9.2276 22 7 -2.5553 -10.2196 -10.1330 23 6 -2.7657 -11.4760 -9.7949 24 7 -3.0303 -11.8249 -8.5519 25 6 -3.0949 -10.9164 -7.5919 26 6 0.4404 -3.3514 -2.3728 27 6 0.2048 -2.3415 -1.2447 28 1 -0.4850 0.8400 0.0004 29 1 1.0921 -4.0637 0.8579 30 1 2.7849 -3.5382 0.6779 31 1 2.2366 -5.6170 -0.6478 32 1 2.8140 -4.2679 -1.6561 33 1 1.1518 -6.6376 -2.3935 34 1 1.5215 -5.3908 -3.6089 35 1 -0.9018 -4.9477 -3.8915 36 1 -1.2716 -6.1944 -2.6761 37 1 0.3364 -7.3596 -4.6838 38 1 -0.8532 -8.0214 -7.0098 39 1 -1.2194 -9.2629 -5.7880 40 1 -3.6438 -8.8223 -6.0681 41 1 -3.2769 -7.5809 -7.2898 42 1 -2.4403 -8.2278 -9.5121 43 1 -2.7196 -12.2401 -10.5568 44 1 -3.3126 -11.2088 -6.5753 45 1 1.2735 -3.0179 -2.9915 46 1 -0.4586 -3.4299 -2.9842 47 1 -0.6904 -2.6172 -0.6874 48 1 0.0842 -1.3434 -1.6660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752367494.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:21 Heat of formation + Delta-G solvation = 39.070005 kcal Electronic energy + Delta-G solvation = -27250.513806 eV Core-core repulsion = 23341.191598 eV Total energy + Delta-G solvation = -3909.322207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.50996 -39.93892 -38.26552 -35.68275 -35.08801 -34.16689 -34.00873 -31.60689 -30.89643 -29.97336 -28.88509 -26.41369 -25.35291 -25.07397 -23.37095 -22.71647 -22.39391 -21.35956 -20.51376 -19.14070 -18.11041 -18.09081 -17.45617 -16.83387 -16.21105 -16.02964 -15.26872 -15.03553 -14.90877 -14.83655 -14.40341 -14.14579 -14.12272 -14.01590 -13.79294 -13.46282 -13.42711 -13.30127 -12.95464 -12.76105 -12.53135 -11.68857 -11.67525 -11.46644 -11.33721 -11.31344 -11.29627 -11.08317 -10.77470 -10.46608 -10.34851 -10.19584 -10.07850 -9.81392 -9.77752 -9.68936 -9.63313 -9.17471 -8.52848 -7.93052 -6.68712 -5.79369 -3.20760 0.37361 0.58348 2.42301 2.88322 3.29795 3.36009 3.43891 3.45906 3.68174 3.74339 4.09861 4.12509 4.30072 4.39913 4.46188 4.49554 4.72183 4.74295 4.91127 5.00918 5.08329 5.13769 5.21200 5.38125 5.39623 5.46484 5.57336 5.60512 5.78403 5.86836 5.90337 5.91319 6.01379 6.07289 6.16597 6.26197 6.30359 6.45823 6.50846 6.65599 6.89712 7.20805 7.26297 7.50471 7.58325 7.60714 7.67150 7.79742 8.01071 8.41928 9.19787 9.83169 10.41472 11.29496 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.029924 B = 0.001602 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.489329 B =17470.491181 C =17848.880749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.595 5.595 10 C 0.148 3.852 11 C 0.046 3.954 12 N -0.529 5.529 13 C 0.045 3.955 14 C 0.120 3.880 15 N -0.729 5.729 16 C 0.511 3.489 17 O -0.536 6.536 18 C -0.136 4.136 19 C -0.058 4.058 20 C -0.185 4.185 21 C 0.151 3.849 22 N -0.519 5.519 23 C 0.285 3.715 24 N -0.519 5.519 25 C 0.151 3.849 26 C 0.031 3.969 27 C 0.177 3.823 28 H 0.254 0.746 29 H 0.026 0.974 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.028 0.972 33 H 0.072 0.928 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.399 0.601 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.169 0.831 43 H 0.196 0.804 44 H 0.169 0.831 45 H 0.026 0.974 46 H 0.064 0.936 47 H 0.028 0.972 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.290 -22.080 -16.558 27.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.021 3.979 11 C -0.083 4.083 12 N -0.255 5.255 13 C -0.084 4.084 14 C -0.004 4.004 15 N -0.381 5.381 16 C 0.297 3.703 17 O -0.413 6.413 18 C -0.176 4.176 19 C -0.097 4.097 20 C -0.189 4.189 21 C -0.015 4.015 22 N -0.232 5.232 23 C -0.002 4.002 24 N -0.232 5.232 25 C -0.015 4.015 26 C -0.098 4.098 27 C 0.051 3.949 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.232 0.768 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.186 0.814 43 H 0.212 0.788 44 H 0.186 0.814 45 H 0.044 0.956 46 H 0.082 0.918 47 H 0.046 0.954 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.477 -22.339 -16.739 28.130 hybrid contribution 1.518 1.467 -0.036 2.112 sum -1.958 -20.872 -16.775 26.849 Atomic orbital electron populations 1.70032 1.05208 1.25415 1.54031 1.25027 0.95301 0.98363 1.01018 0.86234 0.79292 0.84014 0.77301 1.20328 1.21587 1.21684 1.19233 0.92603 0.84790 1.41616 0.91592 1.44127 1.34150 1.01233 1.52360 1.20972 0.97870 0.86506 0.92521 1.22627 0.89257 0.99511 0.96914 1.61877 1.34676 1.05811 1.23109 1.22198 0.95022 0.96944 0.94249 1.21401 0.98109 0.91013 0.89837 1.45993 1.11556 1.41441 1.39125 1.20530 0.83726 0.83689 0.82392 1.90752 1.29384 1.54306 1.66837 1.21657 0.99173 0.98893 0.97845 1.20221 0.96564 0.97037 0.95850 1.21744 1.02463 0.97306 0.97412 1.23248 0.90360 0.99511 0.88412 1.68465 1.14492 1.01974 1.38245 1.25011 0.90726 0.92193 0.92282 1.68456 1.13880 1.38792 1.02064 1.23244 0.90650 0.88380 0.99269 1.23005 0.98801 0.89192 0.98787 1.20872 0.89007 0.96592 0.88387 0.93621 0.95606 0.92542 0.91982 0.95351 0.90912 0.95031 0.91011 0.90397 0.76792 0.88711 0.88684 0.89239 0.89236 0.81419 0.78786 0.81419 0.95606 0.91780 0.95428 0.89291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.22 11.15 55.49 0.62 -25.60 16 2 C 0.00 0.04 4.94 -17.43 -0.09 -0.05 16 3 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.25 -6.93 9.63 -15.06 -0.15 -7.07 16 8 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 9 N -0.60 -14.96 3.04 -172.01 -0.52 -15.49 16 10 C 0.15 3.09 6.69 -3.60 -0.02 3.07 16 11 C 0.05 0.79 5.62 -3.70 -0.02 0.77 16 12 N -0.53 -8.93 4.63 -234.32 -1.08 -10.01 16 13 C 0.04 0.56 5.08 -3.82 -0.02 0.54 16 14 C 0.12 1.47 5.61 -4.04 -0.02 1.44 16 15 N -0.73 -6.55 5.56 -60.29 -0.33 -6.88 16 16 C 0.51 4.96 7.83 -10.98 -0.09 4.87 16 17 O -0.54 -7.62 15.98 5.56 0.09 -7.53 16 18 C -0.14 -0.74 5.68 -27.88 -0.16 -0.90 16 19 C -0.06 -0.34 4.68 -27.89 -0.13 -0.47 16 20 C -0.19 -1.10 5.17 -104.36 -0.54 -1.64 16 21 C 0.15 0.98 11.01 -17.20 -0.19 0.79 16 22 N -0.52 -4.17 10.44 -14.58 -0.15 -4.32 16 23 C 0.29 2.07 12.29 -92.15 -1.13 0.94 16 24 N -0.52 -4.13 10.44 -14.58 -0.15 -4.28 16 25 C 0.15 0.96 11.01 -17.20 -0.19 0.77 16 26 C 0.03 0.59 5.46 -3.70 -0.02 0.57 16 27 C 0.18 4.26 5.42 -3.60 -0.02 4.25 16 28 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.06 1.13 7.96 -51.93 -0.41 0.71 16 31 H 0.06 0.89 7.99 -51.93 -0.41 0.47 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.78 7.97 -51.92 -0.41 0.37 16 34 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 35 H 0.07 1.01 6.40 -51.93 -0.33 0.68 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.40 2.36 8.47 -40.82 -0.35 2.01 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.57 8.06 -51.92 -0.42 0.15 16 41 H 0.09 0.58 8.06 -51.93 -0.42 0.16 16 42 H 0.17 0.73 8.06 -52.49 -0.42 0.30 16 43 H 0.20 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.17 0.69 8.06 -52.48 -0.42 0.27 16 45 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.06 1.13 6.16 -51.93 -0.32 0.81 16 47 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.09 2.37 6.12 -51.92 -0.32 2.05 16 LS Contribution 390.92 15.07 5.89 5.89 Total: -1.00 -34.30 390.92 -11.05 -45.36 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -7.59 Total: -1.58 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: -2.78 Total: 7.89 kcal Atomic # 7 Polarization: -64.96 SS G_CDS: -1.63 Total: -66.58 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: 0.09 Total: -7.53 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.30 -11.05 -45.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752367494.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.426 kcal (2) G-P(sol) polarization free energy of solvation -34.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds