Wall clock time and date at job start Tue Mar 31 2020 18:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86809 * 119.99881 * 2 1 4 4 H 1.48498 * 109.46903 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46911 * 300.00121 * 3 2 1 6 6 H 1.48494 * 109.46897 * 59.99999 * 3 2 1 7 7 C 1.38810 * 120.00409 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00410 * 197.03100 * 7 2 1 9 9 N 1.36938 * 120.00111 * 17.02318 * 7 2 1 10 10 C 1.47073 * 120.88413 * 206.58049 * 9 7 2 11 11 C 1.53241 * 108.52407 * 231.16210 * 10 9 7 12 12 N 1.46894 * 109.33999 * 306.17486 * 11 10 9 13 13 C 1.46902 * 111.00043 * 187.24872 * 12 11 10 14 14 C 1.53002 * 109.47122 * 169.99741 * 13 12 11 15 15 N 1.46506 * 109.46847 * 180.02562 * 14 13 12 16 16 C 1.34776 * 119.99615 * 179.72618 * 15 14 13 17 17 O 1.21277 * 120.00146 * 0.27633 * 16 15 14 18 18 C 1.50705 * 119.99784 * 180.27777 * 16 15 14 19 19 C 1.52995 * 109.47197 * 180.02562 * 18 16 15 20 20 C 1.50699 * 109.47501 * 180.02562 * 19 18 16 21 21 C 1.38590 * 120.79792 * 269.72481 * 20 19 18 22 22 N 1.32336 * 119.10495 * 179.71546 * 21 20 19 23 23 C 1.31804 * 120.81375 * 0.56318 * 22 21 20 24 24 N 1.31793 * 121.75647 * 359.70513 * 23 22 21 25 25 C 1.32331 * 120.81554 * 0.02562 * 24 23 22 26 26 C 1.46902 * 111.27008 * 63.10446 * 12 11 10 27 27 C 1.47082 * 120.87825 * 26.56369 * 9 7 2 28 28 H 0.96995 * 120.00441 * 359.97438 * 1 2 3 29 29 H 1.09010 * 109.62666 * 111.45934 * 10 9 7 30 30 H 1.08992 * 109.79343 * 350.97375 * 10 9 7 31 31 H 1.09000 * 109.49487 * 186.21243 * 11 10 9 32 32 H 1.09004 * 109.48857 * 66.13149 * 11 10 9 33 33 H 1.09008 * 109.46710 * 49.99885 * 13 12 11 34 34 H 1.09002 * 109.47103 * 290.00292 * 13 12 11 35 35 H 1.08994 * 109.47052 * 60.00578 * 14 13 12 36 36 H 1.08995 * 109.47389 * 299.99878 * 14 13 12 37 37 H 0.96994 * 119.99741 * 0.02562 * 15 14 13 38 38 H 1.09003 * 109.46852 * 300.00411 * 18 16 15 39 39 H 1.08998 * 109.46693 * 59.99941 * 18 16 15 40 40 H 1.09009 * 109.46705 * 299.99927 * 19 18 16 41 41 H 1.08996 * 109.47327 * 59.99294 * 19 18 16 42 42 H 1.07998 * 120.45101 * 359.97438 * 21 20 19 43 43 H 1.07997 * 119.12020 * 179.72826 * 23 22 21 44 44 H 1.08003 * 120.44930 * 179.97438 * 25 24 23 45 45 H 1.08991 * 109.49565 * 56.85299 * 26 12 11 46 46 H 1.09004 * 109.49503 * 176.93836 * 26 12 11 47 47 H 1.08998 * 109.62881 * 248.54695 * 27 9 7 48 48 H 1.09008 * 109.63123 * 9.12281 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0548 -1.2227 0.2734 9 7 1.3707 -2.3619 -0.3482 10 6 1.8311 -3.6610 0.1650 11 6 2.0026 -4.6191 -1.0186 12 7 0.7551 -4.6639 -1.7929 13 6 0.8187 -5.6979 -2.8344 14 6 -0.5688 -5.8872 -3.4506 15 7 -0.5054 -6.9189 -4.4889 16 6 -1.6180 -7.2599 -5.1688 17 8 -2.6706 -6.7092 -4.9246 18 6 -1.5541 -8.3256 -6.2325 19 6 -2.9426 -8.5183 -6.8454 20 6 -2.8789 -9.5844 -7.9086 21 6 -2.6089 -9.2559 -9.2276 22 7 -2.5553 -10.2196 -10.1330 23 6 -2.7657 -11.4760 -9.7949 24 7 -3.0303 -11.8249 -8.5519 25 6 -3.0949 -10.9164 -7.5919 26 6 0.4404 -3.3514 -2.3728 27 6 0.2048 -2.3415 -1.2447 28 1 -0.4850 0.8400 0.0004 29 1 1.0921 -4.0637 0.8579 30 1 2.7849 -3.5382 0.6779 31 1 2.2366 -5.6170 -0.6478 32 1 2.8140 -4.2679 -1.6561 33 1 1.1518 -6.6376 -2.3935 34 1 1.5215 -5.3908 -3.6089 35 1 -0.9018 -4.9477 -3.8915 36 1 -1.2716 -6.1944 -2.6761 37 1 0.3364 -7.3596 -4.6838 38 1 -0.8532 -8.0214 -7.0098 39 1 -1.2194 -9.2629 -5.7880 40 1 -3.6438 -8.8223 -6.0681 41 1 -3.2769 -7.5809 -7.2898 42 1 -2.4403 -8.2278 -9.5121 43 1 -2.7196 -12.2401 -10.5568 44 1 -3.3126 -11.2088 -6.5753 45 1 1.2735 -3.0179 -2.9915 46 1 -0.4586 -3.4299 -2.9842 47 1 -0.6904 -2.6172 -0.6874 48 1 0.0842 -1.3434 -1.6660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752367494.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:20 Heat of formation + Delta-G solvation = 14.649588 kcal Electronic energy + Delta-G solvation = -27251.572755 eV Core-core repulsion = 23341.191598 eV Total energy + Delta-G solvation = -3910.381156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.99543 -40.76833 -39.71117 -36.89755 -35.76065 -35.37118 -34.66462 -33.31428 -31.66352 -31.61269 -30.08327 -27.77264 -26.27196 -25.54593 -24.91402 -24.26958 -23.17693 -22.48550 -21.29633 -20.80648 -18.75431 -18.58494 -18.53732 -18.12590 -17.31070 -16.86101 -16.73104 -16.07265 -15.94370 -15.77041 -15.48952 -15.32360 -15.26332 -15.05169 -14.84421 -14.57493 -14.51432 -14.39191 -14.13225 -13.83792 -13.26569 -13.21105 -13.01048 -12.81234 -12.64673 -12.53926 -12.20903 -12.10898 -12.03270 -11.85975 -11.82616 -11.81930 -11.55888 -11.42019 -10.96779 -10.60524 -10.32593 -10.19264 -10.06708 -9.30100 -8.69252 -7.88297 -5.33126 -0.09784 0.10645 1.45525 1.47078 1.57848 1.68177 2.10670 2.50260 2.80020 3.09608 3.26888 3.28154 3.30785 3.64124 3.67302 3.68026 3.85227 3.88015 3.97781 4.08931 4.27171 4.31433 4.34667 4.35781 4.47430 4.54879 4.56117 4.65182 4.69026 4.71244 4.79296 4.84021 4.94424 5.02232 5.05346 5.12695 5.15714 5.20809 5.36798 5.42849 5.46837 5.60922 5.67331 5.98725 6.13910 6.23917 6.36656 6.59119 7.10077 7.12405 7.30596 7.83514 8.37515 9.18756 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.029924 B = 0.001602 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.489329 B =17470.491181 C =17848.880749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.263 4.263 8 H 0.070 0.930 9 N -0.614 5.614 10 C 0.140 3.860 11 C 0.058 3.942 12 N -0.544 5.544 13 C 0.054 3.946 14 C 0.129 3.871 15 N -0.716 5.716 16 C 0.508 3.492 17 O -0.587 6.587 18 C -0.123 4.123 19 C -0.052 4.052 20 C -0.177 4.177 21 C 0.143 3.857 22 N -0.540 5.540 23 C 0.277 3.723 24 N -0.540 5.540 25 C 0.145 3.855 26 C 0.051 3.949 27 C 0.184 3.816 28 H 0.250 0.750 29 H 0.015 0.985 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.028 0.972 33 H 0.102 0.898 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.058 0.942 37 H 0.418 0.582 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.186 0.814 43 H 0.215 0.785 44 H 0.188 0.812 45 H 0.023 0.977 46 H 0.076 0.924 47 H -0.004 1.004 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.346 -24.088 -17.659 29.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.248 4.248 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.217 1.217 6 H -0.220 1.220 7 C -0.393 4.393 8 H 0.088 0.912 9 N -0.338 5.338 10 C 0.015 3.985 11 C -0.071 4.071 12 N -0.269 5.269 13 C -0.074 4.074 14 C 0.004 3.996 15 N -0.369 5.369 16 C 0.296 3.704 17 O -0.467 6.467 18 C -0.163 4.163 19 C -0.091 4.091 20 C -0.181 4.181 21 C -0.022 4.022 22 N -0.254 5.254 23 C -0.010 4.010 24 N -0.253 5.253 25 C -0.020 4.020 26 C -0.079 4.079 27 C 0.058 3.942 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.047 0.953 33 H 0.120 0.880 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.255 0.745 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.203 0.797 43 H 0.231 0.769 44 H 0.205 0.795 45 H 0.041 0.959 46 H 0.094 0.906 47 H 0.014 0.986 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.476 -24.405 -17.853 30.274 hybrid contribution 0.884 2.024 0.353 2.237 sum -0.591 -22.380 -17.501 28.417 Atomic orbital electron populations 1.70199 1.06755 1.25795 1.55610 1.25814 0.96044 1.01585 1.01383 0.85191 0.78645 0.79764 0.76744 1.18907 1.21735 1.21963 1.19595 0.92966 0.85967 1.40765 0.91228 1.44413 1.34130 1.02282 1.53019 1.21171 0.97550 0.85512 0.94278 1.22465 0.89109 1.00241 0.95244 1.61758 1.34985 1.05307 1.24860 1.22202 0.95199 0.96467 0.93542 1.21083 0.97626 0.90907 0.89984 1.45824 1.12533 1.40541 1.38042 1.21289 0.82839 0.83720 0.82529 1.90741 1.31315 1.56260 1.68429 1.21650 0.99391 0.98298 0.96941 1.20123 0.96839 0.96553 0.95560 1.21649 1.02299 0.97045 0.97115 1.23611 0.89869 1.00146 0.88553 1.68511 1.15448 1.02506 1.38926 1.25448 0.90288 0.92580 0.92704 1.68507 1.14759 1.39470 1.02578 1.23629 0.90007 0.88459 0.99954 1.22599 0.99296 0.89446 0.96524 1.20609 0.87861 0.96381 0.89342 0.94112 0.96741 0.91876 0.88091 0.95349 0.87969 0.93590 0.93356 0.92387 0.74523 0.86461 0.86180 0.89872 0.90068 0.79700 0.76872 0.79495 0.95899 0.90623 0.98636 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.45 11.15 21.65 0.24 -56.21 16 2 C -0.05 -3.00 4.94 84.86 0.42 -2.58 16 3 Si 0.97 45.05 29.59 68.60 2.03 47.08 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 7 C -0.26 -14.56 9.63 84.03 0.81 -13.75 16 8 H 0.07 3.72 7.89 -2.91 -0.02 3.70 16 9 N -0.61 -31.34 3.04 -698.12 -2.12 -33.46 16 10 C 0.14 5.77 6.69 86.35 0.58 6.34 16 11 C 0.06 1.83 5.62 86.38 0.49 2.32 16 12 N -0.54 -17.32 4.63 -895.24 -4.14 -21.47 16 13 C 0.05 1.16 5.08 86.30 0.44 1.60 16 14 C 0.13 2.94 5.61 86.38 0.48 3.43 16 15 N -0.72 -10.95 5.56 -463.05 -2.57 -13.52 16 16 C 0.51 8.90 7.83 87.66 0.69 9.59 16 17 O -0.59 -16.53 15.98 -3.02 -0.05 -16.58 16 18 C -0.12 -0.97 5.68 29.85 0.17 -0.80 16 19 C -0.05 -0.51 4.68 29.85 0.14 -0.37 16 20 C -0.18 -1.77 5.17 -19.69 -0.10 -1.87 16 21 C 0.14 1.64 11.01 84.70 0.93 2.57 16 22 N -0.54 -8.02 10.44 -200.05 -2.09 -10.11 16 23 C 0.28 3.71 12.29 180.88 2.22 5.93 16 24 N -0.54 -7.87 10.44 -200.04 -2.09 -9.96 16 25 C 0.14 1.60 11.01 84.70 0.93 2.53 16 26 C 0.05 1.93 5.46 86.38 0.47 2.40 16 27 C 0.18 9.18 5.42 86.35 0.47 9.65 16 28 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 29 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.06 2.45 7.96 -2.39 -0.02 2.43 16 31 H 0.10 2.44 7.99 -2.39 -0.02 2.42 16 32 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.10 1.69 7.97 -2.38 -0.02 1.67 16 34 H 0.05 0.92 8.12 -2.39 -0.02 0.90 16 35 H 0.05 1.34 6.40 -2.39 -0.02 1.33 16 36 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.42 3.24 8.47 -92.71 -0.79 2.45 16 38 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.08 0.96 8.06 -2.38 -0.02 0.94 16 41 H 0.08 0.97 8.06 -2.39 -0.02 0.95 16 42 H 0.19 1.26 8.06 -2.91 -0.02 1.24 16 43 H 0.21 1.62 8.06 -2.91 -0.02 1.60 16 44 H 0.19 1.14 8.06 -2.91 -0.02 1.11 16 45 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.08 2.68 6.16 -2.38 -0.01 2.67 16 47 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 48 H 0.05 3.09 6.12 -2.38 -0.01 3.08 16 Total: -1.00 -77.61 390.92 -1.48 -79.09 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.18 Total: 8.17 kcal Atomic # 6 Polarization: 17.84 SS G_CDS: 9.13 Total: 26.97 kcal Atomic # 7 Polarization: -131.96 SS G_CDS: -12.77 Total: -144.73 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.05 Total: -16.58 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -77.61 -1.48 -79.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752367494.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.742 kcal (2) G-P(sol) polarization free energy of solvation -77.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds