Wall clock time and date at job start Tue Mar 31 2020 17:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99786 * 2 1 4 4 H 1.48503 * 109.47065 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47057 * 299.99764 * 3 2 1 6 6 H 1.48494 * 109.47479 * 60.00167 * 3 2 1 7 7 C 1.38809 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00197 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99909 * 0.02562 * 7 2 1 10 10 C 1.47421 * 125.64988 * 14.76358 * 9 7 2 11 11 C 1.54911 * 104.83193 * 155.91123 * 10 9 7 12 12 C 1.55408 * 101.66918 * 36.92458 * 11 10 9 13 13 C 1.47029 * 125.64595 * 194.80810 * 9 7 2 14 14 H 1.09000 * 109.88449 * 300.59180 * 13 9 7 15 15 C 1.52999 * 109.88106 * 61.60281 * 13 9 7 16 16 N 1.46500 * 109.46871 * 184.49858 * 15 13 9 17 17 C 1.34774 * 119.99978 * 185.11130 * 16 15 13 18 18 O 1.21279 * 120.00076 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00228 * 179.97438 * 17 16 15 20 20 N 1.46499 * 109.47445 * 180.02562 * 19 17 16 21 21 N 1.29114 * 126.00886 * 270.00325 * 20 19 17 22 22 N 1.29012 * 110.25927 * 179.97438 * 21 20 19 23 23 C 1.32908 * 108.63966 * 359.97438 * 22 21 20 24 24 C 1.34402 * 126.00926 * 89.99940 * 20 19 17 25 25 C 1.50536 * 129.25161 * 0.15209 * 24 20 19 26 26 C 1.53431 * 108.32521 * 163.49987 * 25 24 20 27 27 C 1.53165 * 109.53251 * 49.74536 * 26 25 24 28 28 C 1.50600 * 129.16846 * 180.13737 * 23 22 21 29 29 H 0.97002 * 120.00171 * 0.02562 * 1 2 3 30 30 H 1.09006 * 110.36505 * 274.74547 * 10 9 7 31 31 H 1.08995 * 110.37177 * 36.96395 * 10 9 7 32 32 H 1.09000 * 111.00263 * 155.08148 * 11 10 9 33 33 H 1.09000 * 111.00242 * 278.93291 * 11 10 9 34 34 H 1.08996 * 110.85182 * 206.30637 * 12 11 10 35 35 H 1.08999 * 110.69581 * 82.94958 * 12 11 10 36 36 H 1.08996 * 109.47552 * 64.50070 * 15 13 9 37 37 H 1.08994 * 109.47182 * 304.49638 * 15 13 9 38 38 H 0.96996 * 120.00470 * 5.11801 * 16 15 13 39 39 H 1.08997 * 109.47408 * 60.00312 * 19 17 16 40 40 H 1.09002 * 109.47191 * 300.00176 * 19 17 16 41 41 H 1.08995 * 109.69267 * 283.20856 * 25 24 20 42 42 H 1.09001 * 109.69273 * 43.79146 * 25 24 20 43 43 H 1.08999 * 109.46390 * 169.74588 * 26 25 24 44 44 H 1.09003 * 109.45934 * 289.69778 * 26 25 24 45 45 H 1.08998 * 109.44435 * 169.90576 * 27 26 25 46 46 H 1.08996 * 109.46392 * 49.94153 * 27 26 25 47 47 H 1.08994 * 109.68984 * 283.12360 * 28 23 22 48 48 H 1.08999 * 109.68671 * 43.66181 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1071 -2.5530 -0.3053 11 6 -0.2457 -4.0226 -0.7751 12 6 0.7665 -4.7469 0.1555 13 6 1.8973 -3.7076 0.3064 14 1 2.7036 -3.9331 -0.3916 15 6 2.4309 -3.7237 1.7403 16 7 3.0937 -5.0041 2.0002 17 6 3.5525 -5.2868 3.2355 18 8 3.4164 -4.4814 4.1320 19 6 4.2337 -6.6041 3.5032 20 7 4.6364 -6.6688 4.9102 21 7 5.7665 -6.2753 5.3952 22 7 5.7987 -6.4727 6.6697 23 6 4.6457 -7.0174 7.0444 24 6 3.8945 -7.1480 5.9233 25 6 2.5060 -7.7289 5.8952 26 6 2.2769 -8.4946 7.2049 27 6 2.6675 -7.6082 8.3914 28 6 4.1919 -7.4318 8.4193 29 1 -0.4850 0.8400 -0.0004 30 1 -0.7078 -2.3821 0.5882 31 1 -0.4068 -1.8693 -1.0995 32 1 -1.2588 -4.3907 -0.6130 33 1 0.0438 -4.1274 -1.8207 34 1 1.1400 -5.6579 -0.3119 35 1 0.3126 -4.9660 1.1220 36 1 1.6032 -3.5949 2.4375 37 1 3.1459 -2.9114 1.8710 38 1 3.2023 -5.6484 1.2834 39 1 5.1152 -6.6930 2.8682 40 1 3.5450 -7.4203 3.2849 41 1 1.7739 -6.9264 5.8060 42 1 2.4099 -8.4102 5.0498 43 1 1.2248 -8.7676 7.2868 44 1 2.8874 -9.3976 7.2092 45 1 2.3399 -8.0781 9.3187 46 1 2.1899 -6.6338 8.2895 47 1 4.6671 -8.3733 8.6946 48 1 4.4587 -6.6607 9.1420 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753111685.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:17 Heat of formation + Delta-G solvation = 49.567120 kcal Electronic energy + Delta-G solvation = -28860.409012 eV Core-core repulsion = 24951.541994 eV Total energy + Delta-G solvation = -3908.867018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.44927 -40.97140 -39.31192 -37.94927 -36.00730 -35.79086 -34.44552 -31.84178 -31.39224 -31.11591 -30.71731 -29.12696 -26.72075 -25.58674 -25.08170 -23.62269 -22.96895 -22.05027 -21.55625 -21.10637 -20.53150 -19.15902 -18.45749 -18.40731 -17.26632 -16.99941 -16.77228 -16.57973 -15.96070 -15.80609 -15.59636 -15.04620 -14.89016 -14.85816 -14.74498 -14.61868 -14.41029 -14.00468 -13.68654 -13.57278 -13.34129 -13.06140 -13.01343 -12.89387 -12.71857 -12.56579 -12.24124 -12.03028 -11.99892 -11.90113 -11.81771 -11.74348 -11.53370 -11.48938 -11.38967 -11.33466 -10.83093 -10.72009 -10.22326 -9.82898 -8.88552 -7.93051 -5.30010 0.44893 1.22273 1.35358 1.39901 1.42502 1.50150 1.50949 2.07039 2.45178 3.18074 3.27026 3.44631 3.54322 3.72265 3.77719 3.90187 3.92045 3.94486 3.97551 4.03266 4.10969 4.27172 4.42351 4.43660 4.53741 4.56636 4.58888 4.61505 4.71815 4.91541 4.93300 5.00723 5.01772 5.08694 5.14036 5.18930 5.19755 5.22343 5.29103 5.34701 5.45161 5.45670 5.54092 5.57552 5.65845 5.77648 6.20220 6.39927 7.05611 7.09145 7.44645 7.73466 8.38124 9.17821 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015759 B = 0.002597 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.388343 B =10780.667123 C =11441.524197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.059 4.059 3 Si 0.967 3.033 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.297 1.297 7 C -0.238 4.238 8 H 0.075 0.925 9 N -0.612 5.612 10 C 0.172 3.828 11 C -0.134 4.134 12 C -0.110 4.110 13 C 0.147 3.853 14 H 0.056 0.944 15 C 0.130 3.870 16 N -0.691 5.691 17 C 0.494 3.506 18 O -0.585 6.585 19 C 0.096 3.904 20 N -0.269 5.269 21 N -0.129 5.129 22 N -0.301 5.301 23 C -0.043 4.043 24 C -0.003 4.003 25 C -0.049 4.049 26 C -0.109 4.109 27 C -0.119 4.119 28 C -0.032 4.032 29 H 0.248 0.752 30 H -0.010 1.010 31 H 0.034 0.966 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.067 0.933 36 H 0.038 0.962 37 H 0.027 0.973 38 H 0.424 0.576 39 H 0.166 0.834 40 H 0.188 0.812 41 H 0.078 0.922 42 H 0.113 0.887 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.101 0.899 46 H 0.051 0.949 47 H 0.097 0.903 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.813 -26.352 7.514 27.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.253 4.253 3 Si 0.796 3.204 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.224 1.224 7 C -0.367 4.367 8 H 0.093 0.907 9 N -0.336 5.336 10 C 0.047 3.953 11 C -0.172 4.172 12 C -0.148 4.148 13 C 0.040 3.960 14 H 0.073 0.927 15 C 0.003 3.997 16 N -0.345 5.345 17 C 0.279 3.721 18 O -0.465 6.465 19 C -0.028 4.028 20 N -0.060 5.060 21 N -0.106 5.106 22 N -0.165 5.165 23 C -0.184 4.184 24 C -0.138 4.138 25 C -0.088 4.088 26 C -0.147 4.147 27 C -0.157 4.157 28 C -0.072 4.072 29 H 0.057 0.943 30 H 0.008 0.992 31 H 0.052 0.948 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.131 0.869 35 H 0.086 0.914 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.263 0.737 39 H 0.184 0.816 40 H 0.205 0.795 41 H 0.096 0.904 42 H 0.132 0.868 43 H 0.119 0.881 44 H 0.099 0.901 45 H 0.119 0.881 46 H 0.070 0.930 47 H 0.116 0.884 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.095 -24.890 7.730 26.246 hybrid contribution -0.380 1.645 -0.083 1.691 sum 2.715 -23.245 7.647 24.621 Atomic orbital electron populations 1.70133 1.06181 1.25298 1.57550 1.25647 0.96495 1.00898 1.02240 0.85179 0.78326 0.80147 0.76746 1.19321 1.21342 1.22398 1.19299 0.90673 0.83698 1.43068 0.90698 1.44765 1.06994 1.02254 1.79581 1.21285 0.84019 0.93785 0.96242 1.22910 0.99832 0.94976 0.99489 1.22664 0.94815 0.97342 0.99963 1.21390 0.96399 0.86750 0.91445 0.92655 1.21729 0.95047 0.84025 0.98870 1.45631 1.58237 1.19845 1.10799 1.21108 0.78915 0.89084 0.82973 1.90819 1.58364 1.51239 1.46052 1.22302 1.05538 0.97590 0.77383 1.46568 1.11071 1.38835 1.09551 1.78483 1.05988 1.21027 1.05098 1.74696 1.22698 1.15931 1.03192 1.22353 0.91661 1.05375 0.99005 1.22479 0.99268 1.04579 0.87444 1.20477 0.86244 0.99887 1.02199 1.21618 1.03749 0.98025 0.91278 1.21696 0.93022 1.00507 1.00517 1.20123 0.96965 1.02147 0.87917 0.94312 0.99173 0.94785 0.89879 0.91098 0.86913 0.91406 0.94384 0.95429 0.73727 0.81627 0.79492 0.90395 0.86834 0.88137 0.90051 0.88091 0.92993 0.88430 0.90733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.62 10.58 21.65 0.23 -56.39 16 2 C -0.06 -3.36 5.47 84.86 0.46 -2.89 16 3 Si 0.97 46.64 29.55 68.60 2.03 48.66 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 6 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 7 C -0.24 -13.10 9.72 84.03 0.82 -12.28 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.61 -29.56 3.13 -668.25 -2.09 -31.65 16 10 C 0.17 8.03 5.41 86.86 0.47 8.50 16 11 C -0.13 -4.20 7.09 32.08 0.23 -3.97 16 12 C -0.11 -2.82 6.22 31.87 0.20 -2.62 16 13 C 0.15 5.11 3.19 45.34 0.14 5.26 16 14 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 15 C 0.13 4.62 5.10 86.38 0.44 5.06 16 16 N -0.69 -15.76 5.36 -463.08 -2.48 -18.24 16 17 C 0.49 12.81 7.90 87.66 0.69 13.50 16 18 O -0.59 -23.37 16.42 -3.03 -0.05 -23.42 16 19 C 0.10 1.45 6.72 85.63 0.58 2.03 16 20 N -0.27 -6.70 2.82 -338.78 -0.95 -7.65 16 21 N -0.13 -4.26 13.19 37.02 0.49 -3.77 16 22 N -0.30 -10.16 12.40 -48.99 -0.61 -10.77 16 23 C -0.04 -1.14 7.11 41.75 0.30 -0.84 16 24 C 0.00 -0.07 6.76 41.50 0.28 0.21 16 25 C -0.05 -0.64 5.97 29.94 0.18 -0.46 16 26 C -0.11 -0.97 5.90 30.79 0.18 -0.79 16 27 C -0.12 -1.46 5.90 30.81 0.18 -1.28 16 28 C -0.03 -0.57 6.30 29.98 0.19 -0.38 16 29 H 0.25 14.49 8.31 -92.71 -0.77 13.71 16 30 H -0.01 -0.52 8.06 -2.38 -0.02 -0.54 16 31 H 0.03 1.82 6.94 -2.39 -0.02 1.80 16 32 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.07 1.72 7.78 -2.39 -0.02 1.70 16 36 H 0.04 1.58 8.03 -2.39 -0.02 1.56 16 37 H 0.03 1.21 7.86 -2.39 -0.02 1.19 16 38 H 0.42 5.31 8.39 -92.71 -0.78 4.53 16 39 H 0.17 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.19 0.68 7.71 -2.39 -0.02 0.66 16 41 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.11 0.70 7.87 -2.39 -0.02 0.68 16 43 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.08 0.59 8.12 -2.39 -0.02 0.57 16 45 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.05 0.83 8.12 -2.39 -0.02 0.81 16 47 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -89.52 385.96 2.09 -87.43 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 0.19 Total: 6.78 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 5.34 Total: 9.03 kcal Atomic # 7 Polarization: -123.06 SS G_CDS: -5.41 Total: -128.48 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.05 Total: -23.42 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Total: -89.52 2.09 -87.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753111685.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.000 kcal (2) G-P(sol) polarization free energy of solvation -89.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds