Wall clock time and date at job start Tue Mar 31 2020 18:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99754 * 2 1 4 4 H 1.48501 * 109.46896 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.47262 * 300.00614 * 3 2 1 6 6 H 1.48502 * 109.46828 * 60.00810 * 3 2 1 7 7 C 1.38810 * 119.99908 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99659 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00199 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99829 * 174.70915 * 9 7 2 11 11 C 1.52996 * 110.81777 * 300.64681 * 10 9 7 12 12 N 1.46494 * 109.47506 * 300.97607 * 11 10 9 13 13 C 1.34776 * 120.00315 * 184.55142 * 12 11 10 14 14 O 1.21273 * 120.00065 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99981 * 180.02562 * 13 12 11 16 16 N 1.46500 * 109.47226 * 179.97438 * 15 13 12 17 17 C 1.35314 * 125.86842 * 124.70848 * 16 15 13 18 18 C 1.35356 * 106.17364 * 179.90812 * 17 16 15 19 19 C 1.50702 * 126.75169 * 180.12929 * 18 17 16 20 20 C 1.52997 * 117.49630 * 343.86853 * 19 18 17 21 21 C 1.52998 * 117.49533 * 275.24798 * 19 18 17 22 22 N 1.33768 * 106.49366 * 0.35357 * 18 17 16 23 23 N 1.28637 * 108.89240 * 359.77718 * 22 18 17 24 24 C 1.54891 * 110.75136 * 177.31057 * 10 9 7 25 25 C 1.54265 * 104.19712 * 279.62931 * 24 10 9 26 26 C 1.53873 * 106.59973 * 336.38881 * 25 24 10 27 27 C 1.54267 * 106.59565 * 0.02562 * 26 25 24 28 28 H 0.96995 * 120.00244 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99943 * 354.71597 * 9 7 2 30 30 H 1.08997 * 109.47039 * 60.97939 * 11 10 9 31 31 H 1.09000 * 109.47040 * 180.97487 * 11 10 9 32 32 H 0.97005 * 119.99574 * 4.55279 * 12 11 10 33 33 H 1.09002 * 109.47157 * 299.99683 * 15 13 12 34 34 H 1.08999 * 109.47584 * 59.99468 * 15 13 12 35 35 H 1.08000 * 126.91448 * 0.02562 * 17 16 15 36 36 H 1.08995 * 115.54687 * 129.57763 * 19 18 17 37 37 H 1.08997 * 117.50221 * 359.97438 * 20 19 18 38 38 H 1.09004 * 117.49782 * 145.02224 * 20 19 18 39 39 H 1.09005 * 117.49397 * 214.97829 * 21 19 18 40 40 H 1.08996 * 117.50272 * 359.97253 * 21 19 18 41 41 H 1.09003 * 110.48062 * 160.95092 * 24 10 9 42 42 H 1.09000 * 110.48719 * 38.30860 * 24 10 9 43 43 H 1.09002 * 110.03139 * 95.67908 * 25 24 10 44 44 H 1.09005 * 110.03123 * 217.10516 * 25 24 10 45 45 H 1.09004 * 110.02939 * 119.28285 * 26 25 24 46 46 H 1.08998 * 110.03542 * 240.71555 * 26 25 24 47 47 H 1.09009 * 110.48650 * 142.28712 * 27 26 25 48 48 H 1.09001 * 110.48172 * 264.92280 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2123 6 1 1.8915 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0534 -3.6541 -0.1181 11 6 2.8548 -3.7016 -1.4205 12 7 1.9455 -3.5506 -2.5592 13 6 2.4180 -3.6538 -3.8172 14 8 3.5958 -3.8722 -4.0066 15 6 1.4827 -3.4979 -4.9885 16 7 2.2337 -3.6514 -6.2370 17 6 1.9538 -4.5294 -7.2277 18 6 2.8914 -4.3308 -8.1836 19 6 3.0117 -5.0639 -9.4948 20 6 2.2405 -6.3769 -9.6434 21 6 3.7629 -6.3967 -9.4925 22 7 3.6931 -3.3593 -7.7331 23 7 3.2766 -2.9781 -6.5773 24 6 1.0813 -4.8565 -0.0274 25 6 0.8294 -5.0262 1.4850 26 6 2.0363 -4.3992 2.2047 27 6 2.9792 -3.8699 1.1045 28 1 -0.4850 0.8400 0.0004 29 1 0.3587 -2.3899 0.0772 30 1 3.5842 -2.8917 -1.4281 31 1 3.3729 -4.6578 -1.4936 32 1 1.0034 -3.3763 -2.4077 33 1 0.7047 -4.2595 -4.9361 34 1 1.0254 -2.5089 -4.9593 35 1 1.1439 -5.2436 -7.2520 36 1 3.1079 -4.4334 -10.3787 37 1 1.6464 -6.7107 -8.7927 38 1 1.8289 -6.6104 -10.6253 39 1 4.3530 -6.6433 -10.3753 40 1 4.1704 -6.7432 -8.5428 41 1 1.5440 -5.7530 -0.4401 42 1 0.1492 -4.6335 -0.5467 43 1 -0.0863 -4.5088 1.7714 44 1 0.7543 -6.0846 1.7346 45 1 1.7064 -3.5775 2.8404 46 1 2.5470 -5.1533 2.8036 47 1 3.4324 -2.9272 1.4114 48 1 3.7485 -4.6069 0.8744 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753663574.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:10 Heat of formation + Delta-G solvation = 96.992131 kcal Electronic energy + Delta-G solvation = -28738.164301 eV Core-core repulsion = 24831.353786 eV Total energy + Delta-G solvation = -3906.810516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.26519 -39.62609 -38.26950 -37.46954 -34.45762 -34.20952 -33.36331 -30.76907 -30.73504 -29.20663 -28.32848 -27.63077 -24.50795 -24.18020 -23.52477 -22.85366 -21.90551 -20.84869 -20.27315 -19.67947 -18.86311 -17.65026 -17.43497 -17.03614 -16.21653 -15.77734 -15.52349 -15.28747 -15.10903 -14.64534 -14.57872 -14.52981 -14.14289 -13.71313 -13.37067 -13.24897 -12.77756 -12.55819 -12.50019 -11.92401 -11.81301 -11.55362 -11.42536 -11.25968 -11.20347 -10.94627 -10.91544 -10.83017 -10.71278 -10.57520 -10.45063 -10.40333 -10.30319 -9.97784 -9.87073 -9.73612 -9.59727 -9.06348 -8.99472 -8.66080 -7.10920 -5.89112 -3.18544 1.56950 2.16351 2.51757 2.67862 3.37429 3.38746 3.46098 3.47067 3.54940 4.08792 4.42697 4.49899 4.62459 4.63593 4.70329 4.75799 4.85962 5.02589 5.03850 5.09696 5.14594 5.21937 5.35437 5.45738 5.56730 5.57448 5.70781 5.72753 5.82204 5.83326 5.92844 5.93616 6.05946 6.10006 6.11112 6.19384 6.26138 6.36676 6.46858 6.47064 6.56895 6.69502 6.72605 6.82349 6.96872 7.64196 7.74632 8.29196 8.37474 8.59078 9.42011 9.94128 10.29915 11.32699 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012875 B = 0.002892 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.165523 B = 9681.028460 C =11101.189894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.007 4.007 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.234 4.234 8 H 0.070 0.930 9 N -0.707 5.707 10 C 0.188 3.812 11 C 0.122 3.878 12 N -0.693 5.693 13 C 0.497 3.503 14 O -0.525 6.525 15 C 0.093 3.907 16 N -0.275 5.275 17 C -0.052 4.052 18 C 0.005 3.995 19 C -0.069 4.069 20 C -0.171 4.171 21 C -0.166 4.166 22 N -0.269 5.269 23 N -0.045 5.045 24 C -0.123 4.123 25 C -0.117 4.117 26 C -0.111 4.111 27 C -0.131 4.131 28 H 0.254 0.746 29 H 0.385 0.615 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.405 0.595 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.187 0.813 36 H 0.121 0.879 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.049 0.951 47 H 0.074 0.926 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.325 -15.390 -10.974 19.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.203 4.203 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.365 4.365 8 H 0.088 0.912 9 N -0.348 5.348 10 C 0.095 3.905 11 C -0.003 4.003 12 N -0.344 5.344 13 C 0.279 3.721 14 O -0.401 6.401 15 C -0.032 4.032 16 N -0.068 5.068 17 C -0.202 4.202 18 C -0.132 4.132 19 C -0.089 4.089 20 C -0.208 4.208 21 C -0.204 4.204 22 N -0.136 5.136 23 N -0.025 5.025 24 C -0.161 4.161 25 C -0.154 4.154 26 C -0.149 4.149 27 C -0.171 4.171 28 H 0.064 0.936 29 H 0.220 0.780 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.241 0.759 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.205 0.795 36 H 0.139 0.861 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.068 0.932 47 H 0.092 0.908 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.390 -14.259 -10.635 17.792 hybrid contribution -1.226 0.388 0.099 1.290 sum -1.616 -13.870 -10.536 17.493 Atomic orbital electron populations 1.69651 1.05006 1.25617 1.57629 1.24678 0.95428 0.97541 1.02699 0.86212 0.79090 0.84339 0.77156 1.20494 1.21881 1.21933 1.19123 0.91051 0.83692 1.42589 0.91171 1.42312 1.05995 0.99233 1.87263 1.20737 0.91444 0.87298 0.90981 1.21842 0.92643 1.00475 0.85376 1.45623 1.13455 1.70838 1.04478 1.20042 0.88884 0.78826 0.84302 1.90797 1.16252 1.48124 1.84963 1.21957 0.93757 1.07507 0.79973 1.46761 1.20573 1.24830 1.14684 1.23206 1.05399 1.00924 0.90634 1.20961 0.95298 0.99549 0.97416 1.19962 1.06435 0.89091 0.93371 1.23010 0.94848 0.99598 1.03391 1.23002 0.94415 0.99266 1.03687 1.75088 1.23008 1.12175 1.03314 1.78518 0.98468 1.17091 1.08419 1.22561 0.99373 0.97653 0.96482 1.22025 0.98932 0.99313 0.95177 1.21938 0.95823 0.99265 0.97857 1.22745 0.97436 1.00702 0.96236 0.93579 0.78047 0.91321 0.92521 0.75933 0.84967 0.85011 0.79550 0.86142 0.88625 0.88028 0.88152 0.88623 0.91802 0.91822 0.91927 0.92971 0.91759 0.93242 0.90758 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.67 13.06 55.49 0.72 -24.95 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.90 21.71 29.55 -169.99 -5.02 16.69 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.23 -5.76 8.62 -15.06 -0.13 -5.89 16 8 H 0.07 1.77 7.16 -52.49 -0.38 1.39 16 9 N -0.71 -14.78 4.80 -45.41 -0.22 -15.00 16 10 C 0.19 3.14 0.48 -129.84 -0.06 3.08 16 11 C 0.12 2.08 4.46 -4.05 -0.02 2.07 16 12 N -0.69 -10.55 5.26 -60.30 -0.32 -10.87 16 13 C 0.50 7.79 7.84 -10.99 -0.09 7.70 16 14 O -0.53 -10.63 15.67 5.56 0.09 -10.54 16 15 C 0.09 1.06 6.94 -5.19 -0.04 1.02 16 16 N -0.28 -3.88 3.20 -62.44 -0.20 -4.08 16 17 C -0.05 -0.59 10.89 -17.04 -0.19 -0.78 16 18 C 0.01 0.07 6.88 -82.78 -0.57 -0.50 16 19 C -0.07 -0.66 6.33 -91.77 -0.58 -1.25 16 20 C -0.17 -1.16 10.02 -26.73 -0.27 -1.43 16 21 C -0.17 -1.39 10.23 -26.73 -0.27 -1.66 16 22 N -0.27 -4.67 12.41 33.29 0.41 -4.25 16 23 N -0.05 -0.82 12.13 60.35 0.73 -0.09 16 24 C -0.12 -1.69 5.46 -25.07 -0.14 -1.82 16 25 C -0.12 -1.60 6.78 -25.61 -0.17 -1.77 16 26 C -0.11 -1.65 6.78 -25.61 -0.17 -1.82 16 27 C -0.13 -2.14 5.85 -25.09 -0.15 -2.28 16 28 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.38 8.65 7.71 -40.82 -0.31 8.33 16 30 H 0.07 1.39 7.50 -51.93 -0.39 1.00 16 31 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 32 H 0.41 5.66 8.11 -40.82 -0.33 5.33 16 33 H 0.13 0.85 8.07 -51.93 -0.42 0.44 16 34 H 0.13 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.19 1.28 7.45 -52.49 -0.39 0.89 16 36 H 0.12 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.10 0.58 7.23 -51.93 -0.38 0.20 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.79 8.04 -51.93 -0.42 0.38 16 42 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.07 1.38 7.23 -51.92 -0.38 1.01 16 48 H 0.05 0.77 8.05 -51.93 -0.42 0.35 16 LS Contribution 394.83 15.07 5.95 5.95 Total: -1.00 -33.40 394.83 -8.38 -41.78 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -7.59 Total: 10.99 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -2.94 Total: -5.62 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 1.14 Total: -59.24 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.40 -8.38 -41.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753663574.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.768 kcal (2) G-P(sol) polarization free energy of solvation -33.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds