Wall clock time and date at job start Tue Mar 31 2020 18:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99754 * 2 1 4 4 H 1.48501 * 109.46896 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.47262 * 300.00614 * 3 2 1 6 6 H 1.48502 * 109.46828 * 60.00810 * 3 2 1 7 7 C 1.38810 * 119.99908 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99659 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00199 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99829 * 174.70915 * 9 7 2 11 11 C 1.52996 * 110.81777 * 300.64681 * 10 9 7 12 12 N 1.46494 * 109.47506 * 300.97607 * 11 10 9 13 13 C 1.34776 * 120.00315 * 184.55142 * 12 11 10 14 14 O 1.21273 * 120.00065 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99981 * 180.02562 * 13 12 11 16 16 N 1.46500 * 109.47226 * 179.97438 * 15 13 12 17 17 C 1.35314 * 125.86842 * 124.70848 * 16 15 13 18 18 C 1.35356 * 106.17364 * 179.90812 * 17 16 15 19 19 C 1.50702 * 126.75169 * 180.12929 * 18 17 16 20 20 C 1.52997 * 117.49630 * 343.86853 * 19 18 17 21 21 C 1.52998 * 117.49533 * 275.24798 * 19 18 17 22 22 N 1.33768 * 106.49366 * 0.35357 * 18 17 16 23 23 N 1.28637 * 108.89240 * 359.77718 * 22 18 17 24 24 C 1.54891 * 110.75136 * 177.31057 * 10 9 7 25 25 C 1.54265 * 104.19712 * 279.62931 * 24 10 9 26 26 C 1.53873 * 106.59973 * 336.38881 * 25 24 10 27 27 C 1.54267 * 106.59565 * 0.02562 * 26 25 24 28 28 H 0.96995 * 120.00244 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99943 * 354.71597 * 9 7 2 30 30 H 1.08997 * 109.47039 * 60.97939 * 11 10 9 31 31 H 1.09000 * 109.47040 * 180.97487 * 11 10 9 32 32 H 0.97005 * 119.99574 * 4.55279 * 12 11 10 33 33 H 1.09002 * 109.47157 * 299.99683 * 15 13 12 34 34 H 1.08999 * 109.47584 * 59.99468 * 15 13 12 35 35 H 1.08000 * 126.91448 * 0.02562 * 17 16 15 36 36 H 1.08995 * 115.54687 * 129.57763 * 19 18 17 37 37 H 1.08997 * 117.50221 * 359.97438 * 20 19 18 38 38 H 1.09004 * 117.49782 * 145.02224 * 20 19 18 39 39 H 1.09005 * 117.49397 * 214.97829 * 21 19 18 40 40 H 1.08996 * 117.50272 * 359.97253 * 21 19 18 41 41 H 1.09003 * 110.48062 * 160.95092 * 24 10 9 42 42 H 1.09000 * 110.48719 * 38.30860 * 24 10 9 43 43 H 1.09002 * 110.03139 * 95.67908 * 25 24 10 44 44 H 1.09005 * 110.03123 * 217.10516 * 25 24 10 45 45 H 1.09004 * 110.02939 * 119.28285 * 26 25 24 46 46 H 1.08998 * 110.03542 * 240.71555 * 26 25 24 47 47 H 1.09009 * 110.48650 * 142.28712 * 27 26 25 48 48 H 1.09001 * 110.48172 * 264.92280 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2123 6 1 1.8915 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0534 -3.6541 -0.1181 11 6 2.8548 -3.7016 -1.4205 12 7 1.9455 -3.5506 -2.5592 13 6 2.4180 -3.6538 -3.8172 14 8 3.5958 -3.8722 -4.0066 15 6 1.4827 -3.4979 -4.9885 16 7 2.2337 -3.6514 -6.2370 17 6 1.9538 -4.5294 -7.2277 18 6 2.8914 -4.3308 -8.1836 19 6 3.0117 -5.0639 -9.4948 20 6 2.2405 -6.3769 -9.6434 21 6 3.7629 -6.3967 -9.4925 22 7 3.6931 -3.3593 -7.7331 23 7 3.2766 -2.9781 -6.5773 24 6 1.0813 -4.8565 -0.0274 25 6 0.8294 -5.0262 1.4850 26 6 2.0363 -4.3992 2.2047 27 6 2.9792 -3.8699 1.1045 28 1 -0.4850 0.8400 0.0004 29 1 0.3587 -2.3899 0.0772 30 1 3.5842 -2.8917 -1.4281 31 1 3.3729 -4.6578 -1.4936 32 1 1.0034 -3.3763 -2.4077 33 1 0.7047 -4.2595 -4.9361 34 1 1.0254 -2.5089 -4.9593 35 1 1.1439 -5.2436 -7.2520 36 1 3.1079 -4.4334 -10.3787 37 1 1.6464 -6.7107 -8.7927 38 1 1.8289 -6.6104 -10.6253 39 1 4.3530 -6.6433 -10.3753 40 1 4.1704 -6.7432 -8.5428 41 1 1.5440 -5.7530 -0.4401 42 1 0.1492 -4.6335 -0.5467 43 1 -0.0863 -4.5088 1.7714 44 1 0.7543 -6.0846 1.7346 45 1 1.7064 -3.5775 2.8404 46 1 2.5470 -5.1533 2.8036 47 1 3.4324 -2.9272 1.4114 48 1 3.7485 -4.6069 0.8744 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753663574.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:09 Heat of formation + Delta-G solvation = 73.661875 kcal Electronic energy + Delta-G solvation = -28739.175977 eV Core-core repulsion = 24831.353786 eV Total energy + Delta-G solvation = -3907.822191 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.28804 -40.92646 -39.59144 -38.14788 -35.62767 -35.42278 -35.14528 -32.38949 -31.69694 -30.51651 -29.54769 -28.92860 -26.04386 -25.12606 -25.02422 -23.63409 -22.81810 -21.86796 -21.34274 -20.87803 -20.24352 -19.03659 -18.57173 -18.50233 -17.26647 -17.10706 -16.53609 -16.34625 -16.33658 -16.05467 -15.70076 -15.52307 -15.36062 -15.16675 -14.94223 -14.47812 -14.05250 -13.79616 -13.42588 -13.27604 -13.10577 -12.94752 -12.54680 -12.46436 -12.36981 -12.28135 -12.26272 -12.17324 -11.92417 -11.79398 -11.72480 -11.61330 -11.41736 -11.34051 -11.18689 -11.13025 -10.94151 -10.74563 -10.02062 -9.98436 -8.95626 -7.92812 -5.16937 0.58833 1.24978 1.41120 1.46574 1.48072 1.49793 1.51294 2.23721 2.54919 2.89241 3.29149 3.39174 3.59703 3.72518 3.78559 3.81392 3.90449 3.96025 4.00717 4.03105 4.07535 4.10687 4.28760 4.41799 4.44442 4.60794 4.69921 4.77663 4.80235 4.86568 4.88364 4.97540 4.99388 5.03937 5.14906 5.20662 5.21104 5.24239 5.24293 5.32132 5.42403 5.45175 5.49667 5.55831 5.62262 5.70319 6.31693 6.52270 7.16652 7.40520 7.52784 8.13211 8.38889 9.29289 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012875 B = 0.002892 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.165523 B = 9681.028460 C =11101.189894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.059 4.059 3 Si 0.942 3.058 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.296 1.296 7 C -0.211 4.211 8 H 0.059 0.941 9 N -0.707 5.707 10 C 0.183 3.817 11 C 0.131 3.869 12 N -0.687 5.687 13 C 0.494 3.506 14 O -0.576 6.576 15 C 0.096 3.904 16 N -0.277 5.277 17 C -0.031 4.031 18 C -0.010 4.010 19 C -0.092 4.092 20 C -0.139 4.139 21 C -0.174 4.174 22 N -0.311 5.311 23 N -0.109 5.109 24 C -0.112 4.112 25 C -0.113 4.113 26 C -0.109 4.109 27 C -0.133 4.133 28 H 0.248 0.752 29 H 0.379 0.621 30 H 0.027 0.973 31 H 0.069 0.931 32 H 0.414 0.586 33 H 0.193 0.807 34 H 0.144 0.856 35 H 0.240 0.760 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.051 0.949 44 H 0.081 0.919 45 H 0.039 0.961 46 H 0.073 0.927 47 H 0.041 0.959 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.364 -18.703 -11.826 22.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.252 4.252 3 Si 0.775 3.225 4 H -0.206 1.206 5 H -0.227 1.227 6 H -0.223 1.223 7 C -0.343 4.343 8 H 0.077 0.923 9 N -0.347 5.347 10 C 0.092 3.908 11 C 0.004 3.996 12 N -0.338 5.338 13 C 0.279 3.721 14 O -0.456 6.456 15 C -0.028 4.028 16 N -0.070 5.070 17 C -0.182 4.182 18 C -0.148 4.148 19 C -0.112 4.112 20 C -0.177 4.177 21 C -0.212 4.212 22 N -0.177 5.177 23 N -0.088 5.088 24 C -0.150 4.150 25 C -0.151 4.151 26 C -0.147 4.147 27 C -0.173 4.173 28 H 0.057 0.943 29 H 0.213 0.787 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.251 0.749 33 H 0.210 0.790 34 H 0.162 0.838 35 H 0.256 0.744 36 H 0.139 0.861 37 H 0.128 0.872 38 H 0.143 0.857 39 H 0.131 0.869 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.070 0.930 44 H 0.100 0.900 45 H 0.058 0.942 46 H 0.092 0.908 47 H 0.060 0.940 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.412 -17.578 -11.469 21.127 hybrid contribution -0.514 1.301 0.360 1.444 sum -2.926 -16.277 -11.110 19.923 Atomic orbital electron populations 1.69725 1.05568 1.25355 1.60021 1.25105 0.96020 0.99424 1.04643 0.85533 0.78198 0.82364 0.76438 1.20588 1.22695 1.22348 1.19202 0.90653 0.85069 1.39397 0.92278 1.42321 1.05687 0.99736 1.86948 1.20958 0.92241 0.86835 0.90793 1.21626 0.92315 0.99450 0.86190 1.45560 1.13506 1.70494 1.04201 1.20772 0.88849 0.77264 0.85210 1.90782 1.18740 1.50346 1.85718 1.22261 0.93109 1.10386 0.77060 1.46997 1.19808 1.24630 1.15599 1.24022 1.05398 0.99914 0.88834 1.21649 0.95069 0.98993 0.99109 1.20079 1.09407 0.89872 0.91878 1.23172 0.93514 0.95778 1.05210 1.23045 0.96332 0.98352 1.03475 1.74999 1.24766 1.14170 1.03777 1.78453 1.01087 1.19727 1.09488 1.22524 0.98908 0.96584 0.96979 1.22019 0.97557 1.00851 0.94673 1.21924 0.96275 0.99165 0.97332 1.22740 0.98144 0.99863 0.96530 0.94279 0.78718 0.95451 0.91331 0.74918 0.78985 0.83846 0.74368 0.86128 0.87164 0.85740 0.86888 0.90284 0.89413 0.90884 0.92997 0.90006 0.94222 0.90825 0.93997 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -53.28 13.06 21.65 0.28 -53.00 16 2 C -0.06 -3.15 5.50 84.86 0.47 -2.69 16 3 Si 0.94 45.64 29.55 68.60 2.03 47.67 16 4 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 5 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 6 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 7 C -0.21 -10.57 8.62 84.03 0.72 -9.84 16 8 H 0.06 3.08 7.16 -2.91 -0.02 3.06 16 9 N -0.71 -29.43 4.80 -297.57 -1.43 -30.85 16 10 C 0.18 5.91 0.48 4.88 0.00 5.91 16 11 C 0.13 4.38 4.46 86.38 0.38 4.77 16 12 N -0.69 -20.03 5.26 -463.09 -2.43 -22.46 16 13 C 0.49 14.99 7.84 87.66 0.69 15.68 16 14 O -0.58 -23.65 15.67 -3.01 -0.05 -23.70 16 15 C 0.10 1.91 6.94 85.63 0.59 2.51 16 16 N -0.28 -7.39 3.20 -351.46 -1.12 -8.52 16 17 C -0.03 -0.63 10.89 83.49 0.91 0.28 16 18 C -0.01 -0.25 6.88 41.60 0.29 0.04 16 19 C -0.09 -1.65 6.33 -11.54 -0.07 -1.72 16 20 C -0.14 -1.38 10.02 30.59 0.31 -1.07 16 21 C -0.17 -2.62 10.23 30.59 0.31 -2.30 16 22 N -0.31 -11.13 12.41 -48.60 -0.60 -11.74 16 23 N -0.11 -4.05 12.13 37.02 0.45 -3.60 16 24 C -0.11 -2.72 5.46 31.67 0.17 -2.55 16 25 C -0.11 -2.74 6.78 31.32 0.21 -2.53 16 26 C -0.11 -3.05 6.78 31.32 0.21 -2.83 16 27 C -0.13 -4.22 5.85 31.66 0.19 -4.03 16 28 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 29 H 0.38 16.85 7.71 -92.71 -0.72 16.13 16 30 H 0.03 1.14 7.50 -2.39 -0.02 1.12 16 31 H 0.07 2.15 8.13 -2.39 -0.02 2.13 16 32 H 0.41 10.69 8.11 -92.70 -0.75 9.94 16 33 H 0.19 1.43 8.07 -2.39 -0.02 1.41 16 34 H 0.14 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.24 1.90 7.45 -2.91 -0.02 1.87 16 36 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.11 0.78 7.23 -2.39 -0.02 0.76 16 38 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.09 1.77 8.04 -2.39 -0.02 1.76 16 42 H 0.07 1.68 8.09 -2.39 -0.02 1.66 16 43 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 45 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.04 1.59 7.23 -2.38 -0.02 1.57 16 48 H 0.07 2.01 8.05 -2.39 -0.02 1.99 16 Total: -1.00 -78.79 394.83 2.03 -76.76 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: -0.48 Total: 29.82 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 5.38 Total: -0.38 kcal Atomic # 7 Polarization: -125.31 SS G_CDS: -4.86 Total: -130.17 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.05 Total: -23.70 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -78.79 2.03 -76.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753663574.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.426 kcal (2) G-P(sol) polarization free energy of solvation -78.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds