Wall clock time and date at job start Tue Mar 31 2020 18:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00072 * 2 1 4 4 H 1.48499 * 109.47367 * 270.00903 * 3 2 1 5 5 H 1.48498 * 109.46968 * 30.00790 * 3 2 1 6 6 H 1.48498 * 109.47067 * 150.00777 * 3 2 1 7 7 C 1.38813 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00203 * 186.28481 * 7 2 1 9 9 N 1.36937 * 119.99633 * 6.27907 * 7 2 1 10 10 C 1.48300 * 128.20795 * 196.58653 * 9 7 2 11 11 H 1.08996 * 112.20283 * 343.26900 * 10 9 7 12 12 C 1.54609 * 104.25994 * 221.00915 * 10 9 7 13 13 C 1.55890 * 104.90232 * 334.85246 * 12 10 9 14 14 C 1.48298 * 128.21045 * 15.83501 * 9 7 2 15 15 H 1.08996 * 112.21086 * 16.73660 * 14 9 7 16 16 C 1.53700 * 107.27340 * 253.18586 * 14 9 7 17 17 C 1.53143 * 108.88291 * 295.99577 * 16 14 9 18 18 H 1.08997 * 109.43383 * 173.95842 * 17 16 14 19 19 C 1.52995 * 109.43488 * 293.86724 * 17 16 14 20 20 N 1.46499 * 109.47551 * 299.52875 * 19 17 16 21 21 C 1.34773 * 120.00031 * 179.97438 * 20 19 17 22 22 O 1.21283 * 120.00548 * 0.02562 * 21 20 19 23 23 C 1.50702 * 119.99805 * 179.97438 * 21 20 19 24 24 C 1.53005 * 109.47417 * 180.02562 * 23 21 20 25 25 C 1.50688 * 109.47308 * 180.02562 * 24 23 21 26 26 C 1.35353 * 126.91492 * 274.68381 * 25 24 23 27 27 N 1.33773 * 106.49756 * 179.90496 * 26 25 24 28 28 N 1.28633 * 108.88844 * 0.37170 * 27 26 25 29 29 N 1.28723 * 110.17743 * 359.75945 * 28 27 26 30 30 H 0.96997 * 125.86784 * 180.02562 * 29 28 27 31 31 C 1.53146 * 109.68954 * 53.89340 * 17 16 14 32 32 H 0.97007 * 120.00197 * 359.97438 * 1 2 3 33 33 H 1.09006 * 110.37845 * 93.68584 * 12 10 9 34 34 H 1.09004 * 110.37707 * 216.04311 * 12 10 9 35 35 H 1.09006 * 110.39776 * 241.61121 * 13 12 10 36 36 H 1.08995 * 111.09107 * 118.75841 * 13 12 10 37 37 H 1.08999 * 109.56910 * 55.81933 * 16 14 9 38 38 H 1.09005 * 109.56451 * 176.05465 * 16 14 9 39 39 H 1.09008 * 109.47495 * 59.53313 * 19 17 16 40 40 H 1.09005 * 109.47407 * 179.52825 * 19 17 16 41 41 H 0.97004 * 119.99686 * 0.02562 * 20 19 17 42 42 H 1.09000 * 109.47236 * 300.00143 * 23 21 20 43 43 H 1.09004 * 109.47222 * 60.00209 * 23 21 20 44 44 H 1.09000 * 109.46940 * 300.00209 * 24 23 21 45 45 H 1.09004 * 109.46848 * 59.99865 * 24 23 21 46 46 H 1.07993 * 126.75100 * 0.04286 * 26 25 24 47 47 H 1.08996 * 109.57069 * 65.92468 * 31 17 16 48 48 H 1.09003 * 109.56941 * 186.17184 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0854 -1.2050 0.1018 9 7 1.3317 -2.3844 -0.1308 10 6 1.8099 -3.7548 0.1734 11 1 2.8955 -3.8028 0.2587 12 6 1.2643 -4.6155 -0.9893 13 6 0.0122 -3.8437 -1.5060 14 6 -0.0606 -2.5966 -0.5951 15 1 -0.4573 -1.7269 -1.1189 16 6 -0.9021 -2.9628 0.6379 17 6 -0.3988 -4.2938 1.2038 18 1 -0.9163 -4.5093 2.1386 19 6 -0.6775 -5.4126 0.1981 20 7 -2.1200 -5.5075 -0.0396 21 6 -2.6026 -6.4294 -0.8961 22 8 -1.8428 -7.1807 -1.4699 23 6 -4.0865 -6.5273 -1.1402 24 6 -4.3652 -7.6461 -2.1460 25 6 -5.8490 -7.7436 -2.3905 26 6 -6.7501 -8.4364 -1.6557 27 7 -7.9414 -8.2397 -2.2316 28 7 -7.7870 -7.4822 -3.2597 29 7 -6.5476 -7.1609 -3.3923 30 1 -6.1780 -6.5977 -4.0901 31 6 1.1079 -4.2072 1.4638 32 1 -0.4851 0.8401 0.0004 33 1 2.0094 -4.7011 -1.7803 34 1 0.9774 -5.6032 -0.6282 35 1 -0.8844 -4.4524 -1.3888 36 1 0.1368 -3.5466 -2.5473 37 1 -0.8014 -2.1835 1.3932 38 1 -1.9490 -3.0590 0.3498 39 1 -0.1683 -5.1928 -0.7403 40 1 -0.3120 -6.3590 0.5968 41 1 -2.7277 -4.9063 0.4190 42 1 -4.5953 -6.7479 -0.2018 43 1 -4.4525 -5.5809 -1.5382 44 1 -3.8564 -7.4259 -3.0845 45 1 -3.9993 -8.5924 -1.7476 46 1 -6.5477 -9.0293 -0.7761 47 1 1.3007 -3.4848 2.2569 48 1 1.4838 -5.1859 1.7621 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754831356.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:42 Heat of formation + Delta-G solvation = 166.686521 kcal Electronic energy + Delta-G solvation = -29496.821197 eV Core-core repulsion = 25593.032857 eV Total energy + Delta-G solvation = -3903.788340 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.60213 -41.26417 -39.17250 -34.99360 -34.54494 -33.45306 -32.92276 -31.44850 -30.66378 -30.16871 -29.80813 -26.90248 -25.09097 -23.48045 -23.32791 -23.23694 -21.95481 -20.65528 -20.45419 -19.50589 -18.77589 -18.54091 -17.25311 -16.99896 -16.32571 -16.22037 -15.79091 -15.03519 -14.79184 -14.54515 -14.47539 -13.99962 -13.49979 -13.25020 -13.05370 -12.87106 -12.67247 -12.62808 -12.05819 -12.03388 -11.75514 -11.64850 -11.49073 -11.44470 -11.28432 -11.12896 -10.89155 -10.87340 -10.77030 -10.62954 -10.21416 -9.99639 -9.78236 -9.62243 -9.50384 -9.42544 -9.41530 -9.26075 -8.66105 -8.18888 -6.83936 -5.81390 -3.17188 1.21907 2.24076 2.41877 2.67062 3.30367 3.34340 3.40715 3.41408 4.14063 4.34933 4.42299 4.55848 4.62948 4.91383 4.94165 5.12328 5.18096 5.21496 5.26822 5.40670 5.44289 5.55090 5.60674 5.62654 5.67497 5.77581 5.81983 5.87196 6.00859 6.03908 6.11763 6.20944 6.37218 6.42168 6.49938 6.51660 6.57609 6.65672 6.73125 6.78786 6.87598 7.01609 7.06254 7.50227 7.53663 7.63768 7.71427 8.13476 8.20247 8.29284 9.09637 9.71181 10.50644 11.30347 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019801 B = 0.002513 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.701047 B =11138.270922 C =11902.176880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.005 4.005 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.221 4.221 8 H 0.075 0.925 9 N -0.583 5.583 10 C 0.148 3.852 11 H 0.067 0.933 12 C -0.159 4.159 13 C -0.174 4.174 14 C 0.182 3.818 15 H 0.110 0.890 16 C -0.110 4.110 17 C -0.087 4.087 18 H 0.050 0.950 19 C 0.003 3.997 20 N -0.718 5.718 21 C 0.507 3.493 22 O -0.548 6.548 23 C -0.140 4.140 24 C -0.033 4.033 25 C -0.005 4.005 26 C -0.048 4.048 27 N -0.267 5.267 28 N -0.084 5.084 29 N -0.389 5.389 30 H 0.449 0.551 31 C -0.122 4.122 32 H 0.252 0.748 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.035 0.965 39 H 0.194 0.806 40 H 0.046 0.954 41 H 0.396 0.604 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.191 0.809 47 H 0.065 0.935 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.068 -13.542 -1.993 15.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.349 4.349 8 H 0.092 0.908 9 N -0.304 5.304 10 C 0.040 3.960 11 H 0.085 0.915 12 C -0.198 4.198 13 C -0.212 4.212 14 C 0.075 3.925 15 H 0.127 0.873 16 C -0.150 4.150 17 C -0.106 4.106 18 H 0.068 0.932 19 C -0.116 4.116 20 N -0.368 5.368 21 C 0.293 3.707 22 O -0.426 6.426 23 C -0.181 4.181 24 C -0.072 4.072 25 C -0.139 4.139 26 C -0.205 4.205 27 N -0.134 5.134 28 N -0.064 5.064 29 N -0.110 5.110 30 H 0.294 0.706 31 C -0.162 4.162 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.054 0.946 39 H 0.209 0.791 40 H 0.064 0.936 41 H 0.231 0.769 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.107 0.893 45 H 0.122 0.878 46 H 0.208 0.792 47 H 0.084 0.916 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.024 -13.713 -2.837 16.659 hybrid contribution 1.308 1.465 0.644 2.067 sum -7.716 -12.248 -2.193 14.641 Atomic orbital electron populations 1.69835 1.04870 1.25051 1.56245 1.24845 0.95654 0.97670 1.02040 0.86158 0.78707 0.83551 0.77558 1.21668 1.21777 1.20712 1.19002 0.90367 0.82265 1.43313 0.90769 1.45164 1.11140 1.00013 1.74108 1.21562 0.96353 0.86851 0.91273 0.91469 1.23624 0.97538 0.99208 0.99389 1.23824 0.97480 0.99806 1.00089 1.21459 0.85723 0.94194 0.91172 0.87282 1.22063 0.96884 0.94887 1.01117 1.21269 0.97152 0.95595 0.96607 0.93201 1.25217 0.80108 0.97891 1.08349 1.46355 1.10002 1.35863 1.44615 1.20388 0.90226 0.80562 0.79510 1.90702 1.59779 1.42654 1.49513 1.21683 0.94257 1.00586 1.01535 1.19881 0.85569 1.00902 1.00893 1.22383 0.97583 1.01147 0.92751 1.23457 0.88516 1.04914 1.03620 1.75108 1.23640 1.11642 1.03025 1.78309 0.98168 1.14113 1.15830 1.45178 1.06869 1.36109 1.22821 0.70581 1.22133 0.94324 0.99486 1.00231 0.93774 0.92658 0.89263 0.89047 0.93097 0.90724 0.94597 0.79065 0.93559 0.76950 0.88344 0.88834 0.89328 0.87766 0.79196 0.91635 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.67 10.49 55.49 0.58 -24.09 16 2 C -0.01 -0.14 5.45 -17.43 -0.09 -0.23 16 3 Si 0.91 21.13 29.56 -169.99 -5.02 16.10 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.22 -5.76 10.39 -15.06 -0.16 -5.92 16 8 H 0.07 1.90 7.84 -52.49 -0.41 1.49 16 9 N -0.58 -13.54 2.82 -152.75 -0.43 -13.97 16 10 C 0.15 2.82 4.32 -65.73 -0.28 2.54 16 11 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 12 C -0.16 -2.70 5.75 -24.34 -0.14 -2.84 16 13 C -0.17 -3.10 5.83 -24.34 -0.14 -3.24 16 14 C 0.18 3.86 3.11 -65.73 -0.20 3.66 16 15 H 0.11 2.72 6.28 -51.93 -0.33 2.40 16 16 C -0.11 -2.07 5.17 -26.29 -0.14 -2.21 16 17 C -0.09 -1.39 2.76 -90.47 -0.25 -1.64 16 18 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 19 C 0.00 0.05 2.67 -4.04 -0.01 0.03 16 20 N -0.72 -8.58 4.38 -60.29 -0.26 -8.84 16 21 C 0.51 5.82 7.59 -10.99 -0.08 5.74 16 22 O -0.55 -8.16 15.98 5.55 0.09 -8.07 16 23 C -0.14 -1.02 5.68 -27.88 -0.16 -1.18 16 24 C -0.03 -0.22 5.07 -27.89 -0.14 -0.36 16 25 C 0.00 -0.03 6.56 -82.09 -0.54 -0.57 16 26 C -0.05 -0.42 11.99 -17.73 -0.21 -0.63 16 27 N -0.27 -3.13 12.41 30.23 0.38 -2.75 16 28 N -0.08 -0.92 13.38 60.35 0.81 -0.11 16 29 N -0.39 -2.96 6.98 33.54 0.23 -2.72 16 30 H 0.45 1.92 8.96 -190.40 -1.71 0.21 16 31 C -0.12 -2.09 5.37 -26.29 -0.14 -2.23 16 32 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.09 1.38 4.83 -51.93 -0.25 1.13 16 35 H 0.09 1.48 3.96 -51.93 -0.21 1.27 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 1.69 7.99 -51.93 -0.41 1.27 16 38 H 0.04 0.59 6.75 -51.93 -0.35 0.24 16 39 H 0.19 3.00 1.12 -165.05 -0.19 2.82 16 40 H 0.05 0.68 7.98 -51.93 -0.41 0.27 16 41 H 0.40 4.12 7.35 -40.82 -0.30 3.82 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.09 0.61 8.10 -51.93 -0.42 0.19 16 45 H 0.10 0.73 8.10 -51.93 -0.42 0.30 16 46 H 0.19 1.12 8.06 -52.49 -0.42 0.69 16 47 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 365.80 15.07 5.51 5.51 Total: -1.00 -31.70 365.80 -9.16 -40.87 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -8.35 Total: 7.18 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -2.69 Total: -9.10 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 1.30 Total: -52.50 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.09 Total: -8.07 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.70 -9.16 -40.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754831356.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.552 kcal (2) G-P(sol) polarization free energy of solvation -31.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds