Wall clock time and date at job start Tue Mar 31 2020 18:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00072 * 2 1 4 4 H 1.48499 * 109.47367 * 270.00903 * 3 2 1 5 5 H 1.48498 * 109.46968 * 30.00790 * 3 2 1 6 6 H 1.48498 * 109.47067 * 150.00777 * 3 2 1 7 7 C 1.38813 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00203 * 186.28481 * 7 2 1 9 9 N 1.36937 * 119.99633 * 6.27907 * 7 2 1 10 10 C 1.48300 * 128.20795 * 196.58653 * 9 7 2 11 11 H 1.08996 * 112.20283 * 343.26900 * 10 9 7 12 12 C 1.54609 * 104.25994 * 221.00915 * 10 9 7 13 13 C 1.55890 * 104.90232 * 334.85246 * 12 10 9 14 14 C 1.48298 * 128.21045 * 15.83501 * 9 7 2 15 15 H 1.08996 * 112.21086 * 16.73660 * 14 9 7 16 16 C 1.53700 * 107.27340 * 253.18586 * 14 9 7 17 17 C 1.53143 * 108.88291 * 295.99577 * 16 14 9 18 18 H 1.08997 * 109.43383 * 173.95842 * 17 16 14 19 19 C 1.52995 * 109.43488 * 293.86724 * 17 16 14 20 20 N 1.46499 * 109.47551 * 299.52875 * 19 17 16 21 21 C 1.34773 * 120.00031 * 179.97438 * 20 19 17 22 22 O 1.21283 * 120.00548 * 0.02562 * 21 20 19 23 23 C 1.50702 * 119.99805 * 179.97438 * 21 20 19 24 24 C 1.53005 * 109.47417 * 180.02562 * 23 21 20 25 25 C 1.50688 * 109.47308 * 180.02562 * 24 23 21 26 26 C 1.35353 * 126.91492 * 274.68381 * 25 24 23 27 27 N 1.33773 * 106.49756 * 179.90496 * 26 25 24 28 28 N 1.28633 * 108.88844 * 0.37170 * 27 26 25 29 29 N 1.28723 * 110.17743 * 359.75945 * 28 27 26 30 30 H 0.96997 * 125.86784 * 180.02562 * 29 28 27 31 31 C 1.53146 * 109.68954 * 53.89340 * 17 16 14 32 32 H 0.97007 * 120.00197 * 359.97438 * 1 2 3 33 33 H 1.09006 * 110.37845 * 93.68584 * 12 10 9 34 34 H 1.09004 * 110.37707 * 216.04311 * 12 10 9 35 35 H 1.09006 * 110.39776 * 241.61121 * 13 12 10 36 36 H 1.08995 * 111.09107 * 118.75841 * 13 12 10 37 37 H 1.08999 * 109.56910 * 55.81933 * 16 14 9 38 38 H 1.09005 * 109.56451 * 176.05465 * 16 14 9 39 39 H 1.09008 * 109.47495 * 59.53313 * 19 17 16 40 40 H 1.09005 * 109.47407 * 179.52825 * 19 17 16 41 41 H 0.97004 * 119.99686 * 0.02562 * 20 19 17 42 42 H 1.09000 * 109.47236 * 300.00143 * 23 21 20 43 43 H 1.09004 * 109.47222 * 60.00209 * 23 21 20 44 44 H 1.09000 * 109.46940 * 300.00209 * 24 23 21 45 45 H 1.09004 * 109.46848 * 59.99865 * 24 23 21 46 46 H 1.07993 * 126.75100 * 0.04286 * 26 25 24 47 47 H 1.08996 * 109.57069 * 65.92468 * 31 17 16 48 48 H 1.09003 * 109.56941 * 186.17184 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0854 -1.2050 0.1018 9 7 1.3317 -2.3844 -0.1308 10 6 1.8099 -3.7548 0.1734 11 1 2.8955 -3.8028 0.2587 12 6 1.2643 -4.6155 -0.9893 13 6 0.0122 -3.8437 -1.5060 14 6 -0.0606 -2.5966 -0.5951 15 1 -0.4573 -1.7269 -1.1189 16 6 -0.9021 -2.9628 0.6379 17 6 -0.3988 -4.2938 1.2038 18 1 -0.9163 -4.5093 2.1386 19 6 -0.6775 -5.4126 0.1981 20 7 -2.1200 -5.5075 -0.0396 21 6 -2.6026 -6.4294 -0.8961 22 8 -1.8428 -7.1807 -1.4699 23 6 -4.0865 -6.5273 -1.1402 24 6 -4.3652 -7.6461 -2.1460 25 6 -5.8490 -7.7436 -2.3905 26 6 -6.7501 -8.4364 -1.6557 27 7 -7.9414 -8.2397 -2.2316 28 7 -7.7870 -7.4822 -3.2597 29 7 -6.5476 -7.1609 -3.3923 30 1 -6.1780 -6.5977 -4.0901 31 6 1.1079 -4.2072 1.4638 32 1 -0.4851 0.8401 0.0004 33 1 2.0094 -4.7011 -1.7803 34 1 0.9774 -5.6032 -0.6282 35 1 -0.8844 -4.4524 -1.3888 36 1 0.1368 -3.5466 -2.5473 37 1 -0.8014 -2.1835 1.3932 38 1 -1.9490 -3.0590 0.3498 39 1 -0.1683 -5.1928 -0.7403 40 1 -0.3120 -6.3590 0.5968 41 1 -2.7277 -4.9063 0.4190 42 1 -4.5953 -6.7479 -0.2018 43 1 -4.4525 -5.5809 -1.5382 44 1 -3.8564 -7.4259 -3.0845 45 1 -3.9993 -8.5924 -1.7476 46 1 -6.5477 -9.0293 -0.7761 47 1 1.3007 -3.4848 2.2569 48 1 1.4838 -5.1859 1.7621 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754831356.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:41 Heat of formation + Delta-G solvation = 145.382117 kcal Electronic energy + Delta-G solvation = -29497.745025 eV Core-core repulsion = 25593.032857 eV Total energy + Delta-G solvation = -3904.712168 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.26315 -42.61624 -40.19349 -36.20109 -35.34031 -34.54889 -34.10748 -32.84437 -32.04186 -31.65635 -30.85068 -28.29543 -26.13858 -24.90623 -24.79726 -23.94207 -22.65874 -22.03659 -21.46981 -20.97681 -20.24504 -19.19732 -18.75041 -18.02083 -17.51099 -17.01952 -16.70656 -16.54560 -16.16730 -15.61127 -15.26086 -15.16605 -14.55333 -14.52932 -14.30450 -14.25540 -13.98522 -13.66122 -13.32022 -13.15983 -13.09239 -12.96982 -12.90681 -12.70251 -12.60523 -12.39310 -12.32198 -12.24434 -11.95505 -11.75720 -11.57077 -11.41079 -11.18946 -11.03247 -10.91597 -10.84673 -10.68420 -10.40570 -10.11083 -9.37780 -8.68129 -7.80248 -5.15189 0.58651 1.46885 1.47992 1.55343 1.55999 1.80519 1.89077 2.43293 2.51858 3.35967 3.52177 3.64739 3.74027 3.95842 3.98383 4.03159 4.04791 4.08159 4.25128 4.29527 4.33896 4.36478 4.46476 4.54058 4.58539 4.66287 4.69679 4.77610 4.83513 4.96779 5.02629 5.07182 5.10559 5.11288 5.20485 5.22215 5.24786 5.34164 5.41854 5.55237 5.57283 5.60224 5.69160 5.86102 5.96680 6.00173 6.33690 6.72412 7.14881 7.40604 7.45531 7.80648 8.61621 9.29456 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019801 B = 0.002513 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.701047 B =11138.270922 C =11902.176880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.057 4.057 3 Si 0.966 3.034 4 H -0.291 1.291 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.230 4.230 8 H 0.071 0.929 9 N -0.607 5.607 10 C 0.138 3.862 11 H 0.065 0.935 12 C -0.148 4.148 13 C -0.162 4.162 14 C 0.174 3.826 15 H 0.065 0.935 16 C -0.098 4.098 17 C -0.077 4.077 18 H 0.067 0.933 19 C 0.013 3.987 20 N -0.717 5.717 21 C 0.508 3.492 22 O -0.581 6.581 23 C -0.132 4.132 24 C -0.025 4.025 25 C 0.010 3.990 26 C -0.054 4.054 27 N -0.304 5.304 28 N -0.115 5.115 29 N -0.376 5.376 30 H 0.461 0.539 31 C -0.118 4.118 32 H 0.244 0.756 33 H 0.057 0.943 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.041 0.959 37 H 0.029 0.971 38 H 0.057 0.943 39 H 0.181 0.819 40 H 0.055 0.945 41 H 0.406 0.594 42 H 0.120 0.880 43 H 0.108 0.892 44 H 0.089 0.911 45 H 0.107 0.893 46 H 0.215 0.785 47 H 0.039 0.961 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.266 -15.513 -1.709 17.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.251 4.251 3 Si 0.796 3.204 4 H -0.219 1.219 5 H -0.224 1.224 6 H -0.200 1.200 7 C -0.360 4.360 8 H 0.089 0.911 9 N -0.329 5.329 10 C 0.031 3.969 11 H 0.083 0.917 12 C -0.186 4.186 13 C -0.201 4.201 14 C 0.068 3.932 15 H 0.084 0.916 16 C -0.138 4.138 17 C -0.096 4.096 18 H 0.086 0.914 19 C -0.106 4.106 20 N -0.369 5.369 21 C 0.296 3.704 22 O -0.461 6.461 23 C -0.172 4.172 24 C -0.064 4.064 25 C -0.126 4.126 26 C -0.212 4.212 27 N -0.170 5.170 28 N -0.094 5.094 29 N -0.099 5.099 30 H 0.310 0.690 31 C -0.157 4.157 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.075 0.925 39 H 0.196 0.804 40 H 0.073 0.927 41 H 0.242 0.758 42 H 0.138 0.862 43 H 0.126 0.874 44 H 0.108 0.892 45 H 0.126 0.874 46 H 0.232 0.768 47 H 0.057 0.943 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.238 -15.695 -2.566 18.391 hybrid contribution 1.439 2.054 0.550 2.568 sum -7.799 -13.640 -2.016 15.841 Atomic orbital electron populations 1.70021 1.05729 1.24826 1.57444 1.25490 0.96474 1.00218 1.02919 0.85266 0.77783 0.80242 0.77124 1.21860 1.22360 1.19971 1.19257 0.90594 0.83837 1.42303 0.91150 1.45373 1.12002 1.00769 1.74773 1.21808 0.96647 0.85216 0.93207 0.91698 1.23579 0.96872 0.99666 0.98450 1.23774 0.99133 0.98522 0.98627 1.21391 0.85202 0.94125 0.92495 0.91646 1.21836 0.97877 0.95256 0.98810 1.21142 0.96281 0.94368 0.97768 0.91424 1.24800 0.81813 0.97221 1.06814 1.46280 1.09086 1.36437 1.45080 1.20994 0.91649 0.79410 0.78324 1.90698 1.61031 1.43801 1.50604 1.21678 0.91219 1.01474 1.02832 1.19833 0.84714 1.00971 1.00920 1.22444 0.97624 1.00342 0.92151 1.23964 0.87801 1.05086 1.04351 1.75074 1.25397 1.12677 1.03866 1.78260 0.99553 1.15218 1.16387 1.45221 1.06164 1.35550 1.22990 0.69020 1.22050 0.95187 1.00302 0.98210 0.94617 0.92395 0.86683 0.86784 0.94059 0.95181 0.92492 0.80387 0.92729 0.75822 0.86153 0.87390 0.89217 0.87442 0.76841 0.94259 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.24 10.49 21.65 0.23 -52.01 16 2 C -0.06 -3.08 5.45 84.86 0.46 -2.62 16 3 Si 0.97 44.53 29.56 68.60 2.03 46.55 16 4 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 7 C -0.23 -12.32 10.39 84.03 0.87 -11.45 16 8 H 0.07 3.70 7.84 -2.91 -0.02 3.67 16 9 N -0.61 -28.65 2.82 -637.20 -1.80 -30.45 16 10 C 0.14 5.15 4.32 45.43 0.20 5.35 16 11 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 12 C -0.15 -4.69 5.75 32.14 0.18 -4.51 16 13 C -0.16 -5.60 5.83 32.14 0.19 -5.41 16 14 C 0.17 7.50 3.11 45.43 0.14 7.64 16 15 H 0.07 3.39 6.28 -2.39 -0.02 3.38 16 16 C -0.10 -3.66 5.17 30.88 0.16 -3.50 16 17 C -0.08 -2.27 2.76 -10.70 -0.03 -2.30 16 18 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 19 C 0.01 0.34 2.67 86.38 0.23 0.57 16 20 N -0.72 -14.52 4.38 -463.05 -2.03 -16.55 16 21 C 0.51 9.79 7.59 87.66 0.67 10.45 16 22 O -0.58 -15.34 15.98 -3.04 -0.05 -15.39 16 23 C -0.13 -1.40 5.68 29.85 0.17 -1.24 16 24 C -0.02 -0.25 5.07 29.85 0.15 -0.10 16 25 C 0.01 0.12 6.56 41.35 0.27 0.39 16 26 C -0.05 -0.82 11.99 83.73 1.00 0.18 16 27 N -0.30 -6.79 12.41 -58.26 -0.72 -7.51 16 28 N -0.11 -2.40 13.38 37.02 0.50 -1.90 16 29 N -0.38 -5.01 6.98 -47.79 -0.33 -5.35 16 30 H 0.46 3.05 8.96 -219.96 -1.97 1.08 16 31 C -0.12 -3.85 5.37 30.88 0.17 -3.68 16 32 H 0.24 13.51 8.31 -92.70 -0.77 12.74 16 33 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.12 3.13 4.83 -2.39 -0.01 3.12 16 35 H 0.11 3.40 3.96 -2.38 -0.01 3.39 16 36 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.03 1.38 7.99 -2.39 -0.02 1.36 16 38 H 0.06 1.82 6.75 -2.38 -0.02 1.81 16 39 H 0.18 5.03 1.12 -108.64 -0.12 4.90 16 40 H 0.05 1.36 7.98 -2.38 -0.02 1.34 16 41 H 0.41 6.90 7.35 -92.71 -0.68 6.21 16 42 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.09 0.96 8.10 -2.39 -0.02 0.94 16 45 H 0.11 1.12 8.10 -2.39 -0.02 1.10 16 46 H 0.21 1.89 8.06 -2.91 -0.02 1.87 16 47 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -71.39 365.80 0.89 -70.50 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -1.76 Total: 22.33 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 4.83 Total: -10.22 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -4.16 Total: -113.77 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.05 Total: -15.39 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -71.39 0.89 -70.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754831356.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.879 kcal (2) G-P(sol) polarization free energy of solvation -71.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds