Wall clock time and date at job start Tue Mar 31 2020 17:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99938 * 2 1 4 4 H 1.48491 * 109.47204 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46924 * 119.99980 * 3 2 1 6 6 H 1.48501 * 109.47093 * 239.99707 * 3 2 1 7 7 C 1.38808 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00191 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99693 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46987 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47536 * 179.97438 * 11 10 9 13 13 H 1.08997 * 110.88596 * 54.30000 * 12 11 10 14 14 C 1.55161 * 111.00323 * 290.42326 * 12 11 10 15 15 C 1.54371 * 102.91867 * 206.44823 * 14 12 11 16 16 N 1.47018 * 107.28860 * 22.13945 * 15 14 12 17 17 C 1.34777 * 125.64751 * 181.12420 * 16 15 14 18 18 O 1.21285 * 119.99928 * 174.92598 * 17 16 15 19 19 C 1.50698 * 120.00119 * 354.92759 * 17 16 15 20 20 H 1.08994 * 109.68711 * 335.50045 * 19 17 16 21 21 C 1.53432 * 109.69529 * 96.09163 * 19 17 16 22 22 C 1.53119 * 109.54747 * 169.43414 * 21 19 17 23 23 C 1.53420 * 109.57134 * 289.92386 * 22 21 19 24 24 C 1.50598 * 108.33834 * 49.81918 * 23 22 21 25 25 N 1.32903 * 129.16636 * 163.38449 * 24 23 22 26 26 N 1.29017 * 108.63946 * 180.22677 * 25 24 23 27 27 N 1.29109 * 110.25988 * 359.97438 * 26 25 24 28 28 H 0.96993 * 126.01295 * 179.97438 * 27 26 25 29 29 C 1.34398 * 107.98070 * 359.92040 * 27 26 25 30 30 C 1.47431 * 108.70480 * 1.09066 * 16 15 14 31 31 H 0.97001 * 120.00111 * 179.97438 * 1 2 3 32 32 H 0.96998 * 119.99683 * 359.97438 * 9 7 2 33 33 H 1.08994 * 109.47634 * 299.99520 * 10 9 7 34 34 H 1.08997 * 109.47477 * 60.00148 * 10 9 7 35 35 H 1.08997 * 109.47442 * 300.00349 * 11 10 9 36 36 H 1.09000 * 109.46997 * 60.00114 * 11 10 9 37 37 H 1.09004 * 110.71907 * 324.78069 * 14 12 11 38 38 H 1.09000 * 110.72126 * 88.05670 * 14 12 11 39 39 H 1.08998 * 109.84673 * 262.73027 * 15 14 12 40 40 H 1.09004 * 110.02527 * 141.64964 * 15 14 12 41 41 H 1.08998 * 109.45555 * 289.45257 * 21 19 17 42 42 H 1.08993 * 109.45784 * 49.39853 * 21 19 17 43 43 H 1.08998 * 109.44874 * 169.89802 * 22 21 19 44 44 H 1.08992 * 109.44417 * 49.94745 * 22 21 19 45 45 H 1.09008 * 109.69076 * 290.10946 * 23 22 21 46 46 H 1.09002 * 109.69461 * 169.52913 * 23 22 21 47 47 H 1.08997 * 110.36599 * 217.03626 * 30 16 15 48 48 H 1.08999 * 110.36364 * 94.71092 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1040 1.6964 1.2126 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6567 -0.0016 11 6 1.0638 -4.8197 -0.0022 12 6 1.8287 -6.1447 -0.0029 13 1 2.5376 -6.1846 0.8241 14 6 2.5446 -6.3730 -1.3604 15 6 2.6427 -7.9113 -1.4445 16 7 1.6051 -8.4642 -0.5618 17 6 1.3781 -9.7742 -0.3410 18 8 0.5534 -10.1168 0.4796 19 6 2.1491 -10.8133 -1.1136 20 1 2.4940 -10.3889 -2.0564 21 6 3.3525 -11.2850 -0.2869 22 6 3.9782 -12.5157 -0.9490 23 6 3.0334 -13.7153 -0.8006 24 6 1.6576 -13.2925 -1.2438 25 7 0.6121 -14.0458 -1.5693 26 7 -0.3679 -13.2725 -1.8950 27 7 -0.0125 -12.0351 -1.7975 28 1 -0.5703 -11.2649 -1.9878 29 6 1.2661 -12.0020 -1.3848 30 6 0.8546 -7.3483 0.0423 31 1 -0.4850 -0.8400 -0.0004 32 1 0.3556 -2.3880 -0.0016 33 1 2.6853 -3.7142 -0.8911 34 1 2.6840 -3.7149 0.8888 35 1 0.4368 -4.7621 0.8874 36 1 0.4375 -4.7617 -0.8925 37 1 1.9468 -5.9794 -2.1826 38 1 3.5371 -5.9224 -1.3536 39 1 3.6271 -8.2381 -1.1096 40 1 2.4717 -8.2407 -2.4694 41 1 4.0920 -10.4860 -0.2336 42 1 3.0231 -11.5421 0.7198 43 1 4.9301 -12.7417 -0.4687 44 1 4.1445 -12.3133 -2.0070 45 1 3.0023 -14.0316 0.2421 46 1 3.3834 -14.5380 -1.4242 47 1 0.5897 -7.5834 1.0732 48 1 -0.0409 -7.1337 -0.5409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754929770.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:35 Heat of formation + Delta-G solvation = 55.343813 kcal Electronic energy + Delta-G solvation = -28350.995161 eV Core-core repulsion = 24442.378638 eV Total energy + Delta-G solvation = -3908.616522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.85104 -40.65064 -38.41134 -37.17074 -35.47759 -34.21846 -33.35549 -31.36786 -30.73282 -30.53445 -29.71424 -27.46968 -25.28042 -23.95535 -23.38588 -23.22369 -23.00013 -21.87300 -20.37008 -20.25683 -19.79520 -18.35023 -17.87373 -17.32717 -16.52267 -16.39270 -15.87120 -15.40048 -15.01221 -14.70933 -14.58366 -14.37700 -14.24349 -14.01574 -13.87630 -13.60003 -13.53065 -13.18444 -12.89510 -12.74937 -12.38657 -12.05891 -11.93290 -11.86480 -11.82122 -11.58427 -11.46146 -11.07153 -11.02372 -10.81148 -10.74018 -10.71110 -10.59119 -10.48735 -10.23410 -10.01291 -9.29780 -9.21894 -9.06894 -8.92634 -7.05678 -6.15078 -3.15137 1.14909 2.02196 2.13691 2.32740 2.50636 3.48020 3.51647 3.66061 3.69370 3.90314 3.98617 4.19137 4.26348 4.32936 4.40981 4.52177 4.57396 4.67550 4.67967 4.77629 4.85643 4.91244 5.03611 5.10887 5.16774 5.27824 5.33412 5.38837 5.43573 5.48426 5.54199 5.55210 5.57814 5.64283 5.67373 5.70243 5.81098 5.85763 5.91141 6.04466 6.09196 6.19188 6.43044 6.66215 6.70882 7.02984 7.62352 7.75492 8.09383 8.71217 9.18484 10.04812 10.19267 11.33493 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.031980 B = 0.001875 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.347519 B =14932.547086 C =15432.153544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.046 4.046 3 Si 1.081 2.919 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.333 4.333 8 H 0.064 0.936 9 N -0.746 5.746 10 C 0.161 3.839 11 C -0.117 4.117 12 C -0.093 4.093 13 H 0.087 0.913 14 C -0.127 4.127 15 C 0.095 3.905 16 N -0.613 5.613 17 C 0.526 3.474 18 O -0.531 6.531 19 C -0.029 4.029 20 H 0.111 0.889 21 C -0.105 4.105 22 C -0.117 4.117 23 C -0.036 4.036 24 C -0.009 4.009 25 N -0.259 5.259 26 N -0.083 5.083 27 N -0.371 5.371 28 H 0.448 0.552 29 C 0.006 3.994 30 C 0.107 3.893 31 H 0.255 0.745 32 H 0.366 0.634 33 H 0.020 0.980 34 H 0.018 0.982 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.381 -26.071 -4.787 28.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.244 4.244 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.464 4.464 8 H 0.082 0.918 9 N -0.392 5.392 10 C 0.033 3.967 11 C -0.155 4.155 12 C -0.113 4.113 13 H 0.105 0.895 14 C -0.165 4.165 15 C -0.028 4.028 16 N -0.347 5.347 17 C 0.313 3.687 18 O -0.408 6.408 19 C -0.053 4.053 20 H 0.129 0.871 21 C -0.144 4.144 22 C -0.155 4.155 23 C -0.075 4.075 24 C -0.150 4.150 25 N -0.124 5.124 26 N -0.062 5.062 27 N -0.089 5.089 28 H 0.293 0.707 29 C -0.131 4.131 30 C -0.015 4.015 31 H 0.066 0.934 32 H 0.199 0.801 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.091 0.909 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.099 0.901 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.888 -25.789 -4.681 27.372 hybrid contribution 0.231 -0.296 0.067 0.381 sum 8.119 -26.085 -4.615 27.707 Atomic orbital electron populations 1.70891 1.06034 1.28392 1.53576 1.25814 0.97081 1.01086 1.00418 0.83234 0.74221 0.75552 0.75868 1.20984 1.22236 1.22237 1.20024 0.92010 0.85843 1.48521 0.91778 1.42385 1.04906 1.01084 1.90813 1.20547 0.93323 0.84917 0.97892 1.21690 0.98721 0.92731 1.02394 1.22327 0.97142 0.93907 0.97908 0.89497 1.22759 1.02681 0.92711 0.98328 1.22219 0.91243 0.95397 0.93904 1.48574 1.35080 1.04922 1.46137 1.20075 0.83501 0.81776 0.83365 1.90777 1.35470 1.80223 1.34299 1.19945 0.94480 0.90033 1.00806 0.87089 1.21579 0.94428 0.98875 0.99479 1.21645 0.98613 0.93441 1.01773 1.20016 0.86778 0.98432 1.02240 1.21674 0.98166 0.88953 1.06179 1.74830 0.97281 1.26140 1.14181 1.78584 1.20846 0.86030 1.20738 1.44649 1.10271 1.09589 1.44390 0.70681 1.21158 0.86884 0.97659 1.07394 1.22418 0.94885 0.84791 0.99392 0.93426 0.80057 0.96169 0.96424 0.91571 0.91669 0.89988 0.89298 0.90917 0.91202 0.89705 0.90105 0.89694 0.90935 0.89559 0.89358 0.90113 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.02 13.70 55.49 0.76 -28.26 16 2 C -0.05 -1.34 5.50 -17.43 -0.10 -1.44 16 3 Si 1.08 25.58 29.92 -169.99 -5.09 20.49 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.33 -9.33 9.99 -15.06 -0.15 -9.48 16 8 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.75 -18.46 5.60 -59.92 -0.34 -18.80 16 10 C 0.16 3.01 6.14 -4.05 -0.02 2.98 16 11 C -0.12 -1.64 4.83 -26.73 -0.13 -1.77 16 12 C -0.09 -0.97 3.04 -88.47 -0.27 -1.24 16 13 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 14 C -0.13 -1.06 5.75 -24.87 -0.14 -1.21 16 15 C 0.10 0.61 6.15 -3.04 -0.02 0.59 16 16 N -0.61 -5.44 3.33 -170.49 -0.57 -6.01 16 17 C 0.53 5.19 6.80 -10.99 -0.07 5.12 16 18 O -0.53 -7.45 16.68 5.55 0.09 -7.36 16 19 C -0.03 -0.20 2.54 -92.78 -0.24 -0.44 16 20 H 0.11 0.52 6.96 -51.93 -0.36 0.15 16 21 C -0.11 -0.57 5.21 -26.45 -0.14 -0.71 16 22 C -0.12 -0.47 5.90 -26.45 -0.16 -0.63 16 23 C -0.04 -0.22 6.30 -27.71 -0.17 -0.40 16 24 C -0.01 -0.09 7.11 -83.12 -0.59 -0.69 16 25 N -0.26 -3.29 12.40 33.16 0.41 -2.88 16 26 N -0.08 -1.03 13.40 60.35 0.81 -0.23 16 27 N -0.37 -3.69 6.90 33.39 0.23 -3.46 16 28 H 0.45 3.40 8.96 -190.08 -1.70 1.70 16 29 C 0.01 0.05 5.97 -82.49 -0.49 -0.44 16 30 C 0.11 1.10 6.40 -2.53 -0.02 1.08 16 31 H 0.25 7.69 6.77 -40.82 -0.28 7.41 16 32 H 0.37 9.26 6.50 -40.82 -0.27 8.99 16 33 H 0.02 0.38 7.63 -51.93 -0.40 -0.02 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.92 8.04 -51.93 -0.42 0.50 16 37 H 0.08 0.73 7.96 -51.93 -0.41 0.32 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.34 7.72 -51.93 -0.40 -0.07 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 43 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.07 0.25 8.11 -51.93 -0.42 -0.17 16 45 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 46 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.08 0.93 7.99 -51.93 -0.41 0.51 16 48 H 0.07 0.74 8.04 -51.93 -0.42 0.32 16 LS Contribution 384.75 15.07 5.80 5.80 Total: -1.00 -36.64 384.75 -9.52 -46.15 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -8.92 Total: 3.20 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -2.71 Total: -8.66 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: 1.31 Total: -59.63 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: 0.09 Total: -7.36 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -5.09 Total: 20.49 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.64 -9.52 -46.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754929770.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.499 kcal (2) G-P(sol) polarization free energy of solvation -36.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds