Wall clock time and date at job start Tue Mar 31 2020 17:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99938 * 2 1 4 4 H 1.48491 * 109.47204 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46924 * 119.99980 * 3 2 1 6 6 H 1.48501 * 109.47093 * 239.99707 * 3 2 1 7 7 C 1.38808 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00191 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99693 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46987 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47536 * 179.97438 * 11 10 9 13 13 H 1.08997 * 110.88596 * 54.30000 * 12 11 10 14 14 C 1.55161 * 111.00323 * 290.42326 * 12 11 10 15 15 C 1.54371 * 102.91867 * 206.44823 * 14 12 11 16 16 N 1.47018 * 107.28860 * 22.13945 * 15 14 12 17 17 C 1.34777 * 125.64751 * 181.12420 * 16 15 14 18 18 O 1.21285 * 119.99928 * 174.92598 * 17 16 15 19 19 C 1.50698 * 120.00119 * 354.92759 * 17 16 15 20 20 H 1.08994 * 109.68711 * 335.50045 * 19 17 16 21 21 C 1.53432 * 109.69529 * 96.09163 * 19 17 16 22 22 C 1.53119 * 109.54747 * 169.43414 * 21 19 17 23 23 C 1.53420 * 109.57134 * 289.92386 * 22 21 19 24 24 C 1.50598 * 108.33834 * 49.81918 * 23 22 21 25 25 N 1.32903 * 129.16636 * 163.38449 * 24 23 22 26 26 N 1.29017 * 108.63946 * 180.22677 * 25 24 23 27 27 N 1.29109 * 110.25988 * 359.97438 * 26 25 24 28 28 H 0.96993 * 126.01295 * 179.97438 * 27 26 25 29 29 C 1.34398 * 107.98070 * 359.92040 * 27 26 25 30 30 C 1.47431 * 108.70480 * 1.09066 * 16 15 14 31 31 H 0.97001 * 120.00111 * 179.97438 * 1 2 3 32 32 H 0.96998 * 119.99683 * 359.97438 * 9 7 2 33 33 H 1.08994 * 109.47634 * 299.99520 * 10 9 7 34 34 H 1.08997 * 109.47477 * 60.00148 * 10 9 7 35 35 H 1.08997 * 109.47442 * 300.00349 * 11 10 9 36 36 H 1.09000 * 109.46997 * 60.00114 * 11 10 9 37 37 H 1.09004 * 110.71907 * 324.78069 * 14 12 11 38 38 H 1.09000 * 110.72126 * 88.05670 * 14 12 11 39 39 H 1.08998 * 109.84673 * 262.73027 * 15 14 12 40 40 H 1.09004 * 110.02527 * 141.64964 * 15 14 12 41 41 H 1.08998 * 109.45555 * 289.45257 * 21 19 17 42 42 H 1.08993 * 109.45784 * 49.39853 * 21 19 17 43 43 H 1.08998 * 109.44874 * 169.89802 * 22 21 19 44 44 H 1.08992 * 109.44417 * 49.94745 * 22 21 19 45 45 H 1.09008 * 109.69076 * 290.10946 * 23 22 21 46 46 H 1.09002 * 109.69461 * 169.52913 * 23 22 21 47 47 H 1.08997 * 110.36599 * 217.03626 * 30 16 15 48 48 H 1.08999 * 110.36364 * 94.71092 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1040 1.6964 1.2126 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6567 -0.0016 11 6 1.0638 -4.8197 -0.0022 12 6 1.8287 -6.1447 -0.0029 13 1 2.5376 -6.1846 0.8241 14 6 2.5446 -6.3730 -1.3604 15 6 2.6427 -7.9113 -1.4445 16 7 1.6051 -8.4642 -0.5618 17 6 1.3781 -9.7742 -0.3410 18 8 0.5534 -10.1168 0.4796 19 6 2.1491 -10.8133 -1.1136 20 1 2.4940 -10.3889 -2.0564 21 6 3.3525 -11.2850 -0.2869 22 6 3.9782 -12.5157 -0.9490 23 6 3.0334 -13.7153 -0.8006 24 6 1.6576 -13.2925 -1.2438 25 7 0.6121 -14.0458 -1.5693 26 7 -0.3679 -13.2725 -1.8950 27 7 -0.0125 -12.0351 -1.7975 28 1 -0.5703 -11.2649 -1.9878 29 6 1.2661 -12.0020 -1.3848 30 6 0.8546 -7.3483 0.0423 31 1 -0.4850 -0.8400 -0.0004 32 1 0.3556 -2.3880 -0.0016 33 1 2.6853 -3.7142 -0.8911 34 1 2.6840 -3.7149 0.8888 35 1 0.4368 -4.7621 0.8874 36 1 0.4375 -4.7617 -0.8925 37 1 1.9468 -5.9794 -2.1826 38 1 3.5371 -5.9224 -1.3536 39 1 3.6271 -8.2381 -1.1096 40 1 2.4717 -8.2407 -2.4694 41 1 4.0920 -10.4860 -0.2336 42 1 3.0231 -11.5421 0.7198 43 1 4.9301 -12.7417 -0.4687 44 1 4.1445 -12.3133 -2.0070 45 1 3.0023 -14.0316 0.2421 46 1 3.3834 -14.5380 -1.4242 47 1 0.5897 -7.5834 1.0732 48 1 -0.0409 -7.1337 -0.5409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754929770.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:34 Heat of formation + Delta-G solvation = 29.305615 kcal Electronic energy + Delta-G solvation = -28352.124261 eV Core-core repulsion = 24442.378638 eV Total energy + Delta-G solvation = -3909.745623 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.60666 -41.40355 -39.22894 -37.76373 -37.12392 -35.01491 -34.72030 -32.69002 -31.50331 -31.23151 -30.60859 -28.74022 -26.16530 -25.33714 -24.47502 -23.85265 -23.66030 -23.30780 -21.32167 -20.88977 -20.44610 -19.38119 -19.05174 -18.53528 -17.39887 -17.18535 -16.68620 -16.50690 -16.01418 -15.84074 -15.74619 -15.35982 -15.23443 -14.94939 -14.73807 -14.63637 -14.43904 -13.98793 -13.93528 -13.33150 -13.24248 -13.10735 -12.79718 -12.73132 -12.59305 -12.49002 -12.39768 -12.33964 -12.07069 -11.99582 -11.86327 -11.69180 -11.60531 -11.58863 -11.39537 -11.24067 -10.98209 -10.91279 -10.01272 -9.79558 -9.11960 -8.41149 -5.35297 0.39974 1.29038 1.36061 1.58889 1.66393 1.68980 1.79672 1.85344 2.71619 3.04370 3.26034 3.38996 3.42850 3.51066 3.59778 3.67136 3.76092 3.88489 4.00243 4.04726 4.22437 4.26048 4.27860 4.28936 4.37750 4.42298 4.50170 4.55236 4.58874 4.69735 4.75911 4.80999 4.88408 4.91053 4.94279 5.02235 5.07526 5.15562 5.16737 5.23022 5.28906 5.29606 5.39109 5.40445 5.57926 5.74553 6.34012 6.48244 6.88995 7.08982 7.29655 7.99587 8.09808 9.10998 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.031980 B = 0.001875 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.347519 B =14932.547086 C =15432.153544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.108 4.108 3 Si 1.129 2.871 4 H -0.294 1.294 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.335 4.335 8 H 0.069 0.931 9 N -0.763 5.763 10 C 0.159 3.841 11 C -0.104 4.104 12 C -0.085 4.085 13 H 0.089 0.911 14 C -0.125 4.125 15 C 0.094 3.906 16 N -0.609 5.609 17 C 0.526 3.474 18 O -0.582 6.582 19 C -0.021 4.021 20 H 0.146 0.854 21 C -0.105 4.105 22 C -0.107 4.107 23 C -0.039 4.039 24 C -0.020 4.020 25 N -0.292 5.292 26 N -0.117 5.117 27 N -0.367 5.367 28 H 0.455 0.545 29 C 0.006 3.994 30 C 0.109 3.891 31 H 0.243 0.757 32 H 0.359 0.641 33 H 0.031 0.969 34 H 0.015 0.985 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.112 0.888 42 H 0.059 0.941 43 H 0.109 0.891 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.063 0.937 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.747 -26.347 -5.864 29.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.299 4.299 3 Si 0.953 3.047 4 H -0.221 1.221 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.466 4.466 8 H 0.087 0.913 9 N -0.408 5.408 10 C 0.033 3.967 11 C -0.142 4.142 12 C -0.105 4.105 13 H 0.107 0.893 14 C -0.163 4.163 15 C -0.027 4.027 16 N -0.342 5.342 17 C 0.315 3.685 18 O -0.462 6.462 19 C -0.044 4.044 20 H 0.164 0.836 21 C -0.143 4.143 22 C -0.145 4.145 23 C -0.078 4.078 24 C -0.161 4.161 25 N -0.157 5.157 26 N -0.095 5.095 27 N -0.086 5.086 28 H 0.301 0.699 29 C -0.131 4.131 30 C -0.014 4.014 31 H 0.054 0.946 32 H 0.191 0.809 33 H 0.049 0.951 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.130 0.870 42 H 0.078 0.922 43 H 0.127 0.873 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.116 0.884 47 H 0.081 0.919 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.292 -26.110 -5.785 29.030 hybrid contribution -0.804 -0.232 0.439 0.945 sum 10.488 -26.342 -5.346 28.853 Atomic orbital electron populations 1.71003 1.07233 1.27860 1.56356 1.27287 0.97156 1.04899 1.00592 0.82622 0.73380 0.71412 0.77284 1.22063 1.20348 1.20023 1.20417 0.92487 0.87140 1.46604 0.91299 1.42681 1.04902 1.02408 1.90795 1.20739 0.94029 0.84064 0.97872 1.21514 0.97829 0.93053 1.01814 1.22155 0.96907 0.91669 0.99724 0.89268 1.22762 1.02635 0.94537 0.96350 1.22445 0.91677 0.93622 0.94945 1.48605 1.35243 1.04358 1.45956 1.20557 0.82915 0.82256 0.82806 1.90763 1.37786 1.80986 1.36646 1.20123 0.93975 0.88156 1.02116 0.83618 1.21666 0.94125 1.00414 0.98114 1.21653 0.98591 0.91438 1.02832 1.20240 0.85318 1.00048 1.02224 1.22375 0.99070 0.89088 1.05538 1.74778 0.98310 1.27253 1.15323 1.78521 1.21488 0.86990 1.22541 1.44711 1.10824 1.09273 1.43803 0.69866 1.21636 0.86657 0.98529 1.06300 1.22246 0.95082 0.85408 0.98631 0.94620 0.80916 0.95124 0.96652 0.92749 0.91781 0.90464 0.88393 0.88065 0.88523 0.87013 0.92199 0.87274 0.89470 0.89604 0.88431 0.91870 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.97 13.70 21.65 0.30 -60.67 16 2 C -0.11 -6.26 5.50 84.86 0.47 -5.79 16 3 Si 1.13 50.97 29.92 68.60 2.05 53.02 16 4 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 5 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 7 C -0.34 -18.64 9.99 84.03 0.84 -17.80 16 8 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 9 N -0.76 -37.87 5.60 -343.47 -1.92 -39.79 16 10 C 0.16 5.81 6.14 86.38 0.53 6.34 16 11 C -0.10 -2.85 4.83 30.59 0.15 -2.70 16 12 C -0.08 -1.63 3.04 -9.40 -0.03 -1.65 16 13 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 14 C -0.13 -1.68 5.75 31.80 0.18 -1.50 16 15 C 0.09 0.79 6.15 86.75 0.53 1.32 16 16 N -0.61 -9.28 3.33 -811.70 -2.70 -11.98 16 17 C 0.53 9.44 6.80 87.66 0.60 10.03 16 18 O -0.58 -16.31 16.68 -3.04 -0.05 -16.36 16 19 C -0.02 -0.23 2.54 -12.19 -0.03 -0.26 16 20 H 0.15 0.61 6.96 -2.39 -0.02 0.60 16 21 C -0.10 -0.76 5.21 30.78 0.16 -0.60 16 22 C -0.11 -0.45 5.90 30.78 0.18 -0.27 16 23 C -0.04 -0.42 6.30 29.96 0.19 -0.23 16 24 C -0.02 -0.38 7.11 41.75 0.30 -0.08 16 25 N -0.29 -7.57 12.40 -48.99 -0.61 -8.17 16 26 N -0.12 -3.01 13.40 37.02 0.50 -2.51 16 27 N -0.37 -7.29 6.90 -48.26 -0.33 -7.62 16 28 H 0.45 6.97 8.96 -219.69 -1.97 5.00 16 29 C 0.01 0.11 5.97 41.50 0.25 0.35 16 30 C 0.11 2.13 6.40 86.85 0.56 2.69 16 31 H 0.24 15.12 6.77 -92.71 -0.63 14.50 16 32 H 0.36 18.56 6.50 -92.71 -0.60 17.96 16 33 H 0.03 1.08 7.63 -2.39 -0.02 1.06 16 34 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.06 1.78 8.04 -2.39 -0.02 1.76 16 37 H 0.08 1.15 7.96 -2.39 -0.02 1.13 16 38 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.10 0.39 7.72 -2.39 -0.02 0.37 16 41 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.06 0.72 8.08 -2.39 -0.02 0.70 16 43 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.09 0.17 8.11 -2.39 -0.02 0.15 16 45 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 46 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.06 1.46 7.99 -2.39 -0.02 1.45 16 48 H 0.07 1.40 8.04 -2.39 -0.02 1.38 16 Total: -1.00 -82.41 384.75 0.65 -81.75 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -1.45 Total: 22.49 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 4.87 Total: -10.15 kcal Atomic # 7 Polarization: -125.98 SS G_CDS: -4.77 Total: -130.75 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.05 Total: -16.36 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 2.05 Total: 53.02 kcal Total: -82.41 0.65 -81.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754929770.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.059 kcal (2) G-P(sol) polarization free energy of solvation -82.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds