Wall clock time and date at job start Tue Mar 31 2020 17:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99927 * 2 1 4 4 H 1.48500 * 109.47027 * 240.00013 * 3 2 1 5 5 H 1.48501 * 109.47379 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47035 * 120.00125 * 3 2 1 7 7 C 1.38815 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99776 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99912 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99627 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46973 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47022 * 180.02562 * 11 10 9 13 13 H 1.09009 * 110.87998 * 305.69678 * 12 11 10 14 14 C 1.55151 * 111.00654 * 69.57491 * 12 11 10 15 15 C 1.54331 * 102.94096 * 153.57782 * 14 12 11 16 16 N 1.47027 * 107.26834 * 337.80797 * 15 14 12 17 17 C 1.34779 * 125.64291 * 178.97147 * 16 15 14 18 18 O 1.21278 * 119.99228 * 174.63927 * 17 16 15 19 19 C 1.50696 * 120.00466 * 354.64185 * 17 16 15 20 20 H 1.09000 * 109.68658 * 33.26153 * 19 17 16 21 21 C 1.53434 * 109.69041 * 272.71518 * 19 17 16 22 22 C 1.53132 * 109.53935 * 190.60808 * 21 19 17 23 23 C 1.53417 * 109.60942 * 70.01249 * 22 21 19 24 24 C 1.50597 * 108.33921 * 310.19683 * 23 22 21 25 25 N 1.32904 * 129.16307 * 196.61477 * 24 23 22 26 26 N 1.29023 * 108.63678 * 179.77225 * 25 24 23 27 27 N 1.29101 * 110.25516 * 0.02562 * 26 25 24 28 28 H 0.97000 * 126.00450 * 180.02562 * 27 26 25 29 29 C 1.34401 * 107.98907 * 0.07031 * 27 26 25 30 30 C 1.47467 * 108.72330 * 358.97582 * 16 15 14 31 31 H 0.97006 * 120.00005 * 359.97438 * 1 2 3 32 32 H 0.96996 * 120.00162 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.47401 * 59.99768 * 10 9 7 34 34 H 1.09003 * 109.47002 * 299.99616 * 10 9 7 35 35 H 1.09003 * 109.46951 * 299.99657 * 11 10 9 36 36 H 1.09000 * 109.47238 * 59.99678 * 11 10 9 37 37 H 1.09000 * 110.72460 * 271.94217 * 14 12 11 38 38 H 1.09004 * 110.71687 * 35.04263 * 14 12 11 39 39 H 1.08996 * 109.88239 * 97.22479 * 15 14 12 40 40 H 1.09001 * 109.88115 * 218.24322 * 15 14 12 41 41 H 1.08995 * 109.46055 * 310.59827 * 21 19 17 42 42 H 1.09008 * 109.45809 * 70.55105 * 21 19 17 43 43 H 1.08996 * 109.43167 * 309.97279 * 22 21 19 44 44 H 1.08997 * 109.44189 * 190.06273 * 22 21 19 45 45 H 1.09001 * 109.69150 * 190.48437 * 23 22 21 46 46 H 1.09006 * 109.69083 * 69.90870 * 23 22 21 47 47 H 1.08994 * 110.34878 * 265.25132 * 30 16 15 48 48 H 1.09004 * 110.40381 * 142.91421 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 6 1.8287 -6.1448 -0.0016 13 1 2.5382 -6.1842 -0.8282 14 6 2.5436 -6.3736 1.3563 15 6 2.6425 -7.9115 1.4399 16 7 1.6049 -8.4643 0.5570 17 6 1.3772 -9.7743 0.3369 18 8 0.4303 -10.1202 -0.3372 19 6 2.2991 -10.8092 0.9285 20 1 2.6734 -10.4603 1.8909 21 6 3.4756 -11.0587 -0.0243 22 6 4.2624 -12.2862 0.4438 23 6 3.4261 -13.5519 0.2149 24 6 2.0544 -13.3245 0.7936 25 7 1.1124 -14.2126 1.0939 26 7 0.0917 -13.5851 1.5724 27 7 0.3207 -12.3149 1.6004 28 1 -0.2912 -11.6320 1.9170 29 6 1.5554 -12.1049 1.1128 30 6 0.8546 -7.3483 -0.0482 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3880 -0.0016 33 1 2.6840 -3.7150 0.8888 34 1 2.6853 -3.7142 -0.8912 35 1 0.4368 -4.7622 0.8876 36 1 0.4374 -4.7618 -0.8924 37 1 3.5361 -5.9230 1.3504 38 1 1.9466 -5.9777 2.1779 39 1 3.6269 -8.2383 1.1050 40 1 2.4725 -8.2387 2.4656 41 1 3.0967 -11.2332 -1.0312 42 1 4.1303 -10.1871 -0.0289 43 1 4.4895 -12.1882 1.5053 44 1 5.1920 -12.3583 -0.1207 45 1 3.8985 -14.3991 0.7119 46 1 3.3455 -13.7505 -0.8538 47 1 -0.0413 -7.1339 0.5345 48 1 0.5904 -7.5829 -1.0794 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754929771.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:38 Heat of formation + Delta-G solvation = 54.800641 kcal Electronic energy + Delta-G solvation = -28322.203813 eV Core-core repulsion = 24413.563737 eV Total energy + Delta-G solvation = -3908.640076 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.81229 -40.60685 -38.34453 -37.16284 -35.26656 -34.15940 -33.15255 -31.34168 -30.73349 -30.49854 -29.73081 -27.58468 -25.31591 -24.02860 -23.41298 -23.18722 -22.98082 -21.61994 -20.30331 -20.21646 -19.75864 -18.28860 -17.81967 -17.17592 -16.40162 -16.35983 -15.84177 -15.36013 -14.88754 -14.78563 -14.53640 -14.31013 -14.21459 -13.98387 -13.73304 -13.48924 -13.21412 -13.17386 -12.84589 -12.69142 -12.34630 -12.04045 -11.83941 -11.80161 -11.76410 -11.55446 -11.43008 -11.15553 -11.03048 -10.86203 -10.75606 -10.68728 -10.58532 -10.43004 -10.21945 -10.07594 -9.73319 -9.26848 -9.02828 -8.91037 -6.97049 -5.80644 -3.09788 1.19346 2.06553 2.17126 2.38001 2.55195 3.40552 3.44883 3.46220 3.69469 3.93476 4.01107 4.22388 4.31905 4.36089 4.45278 4.55085 4.56020 4.67996 4.70713 4.80612 4.89838 4.95005 5.08901 5.14591 5.22877 5.30070 5.36394 5.45836 5.50265 5.51499 5.54548 5.57757 5.63925 5.70937 5.71537 5.75166 5.84574 5.92795 5.99353 6.14484 6.28058 6.29000 6.48119 6.75705 6.80469 7.07726 7.64673 7.65923 8.13310 8.38306 9.49116 10.07302 10.41231 11.42136 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.032747 B = 0.001867 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.830862 B =14993.767609 C =15503.107162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.155 3.845 11 C -0.116 4.116 12 C -0.093 4.093 13 H 0.086 0.914 14 C -0.127 4.127 15 C 0.095 3.905 16 N -0.612 5.612 17 C 0.527 3.473 18 O -0.534 6.534 19 C -0.029 4.029 20 H 0.112 0.888 21 C -0.105 4.105 22 C -0.117 4.117 23 C -0.035 4.035 24 C -0.011 4.011 25 N -0.260 5.260 26 N -0.084 5.084 27 N -0.368 5.368 28 H 0.448 0.552 29 C 0.006 3.994 30 C 0.108 3.892 31 H 0.256 0.744 32 H 0.383 0.617 33 H 0.019 0.981 34 H 0.017 0.983 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.072 0.928 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.363 -25.592 4.041 27.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.028 3.972 11 C -0.154 4.154 12 C -0.113 4.113 13 H 0.105 0.895 14 C -0.165 4.165 15 C -0.028 4.028 16 N -0.346 5.346 17 C 0.314 3.686 18 O -0.411 6.411 19 C -0.053 4.053 20 H 0.130 0.870 21 C -0.143 4.143 22 C -0.155 4.155 23 C -0.075 4.075 24 C -0.152 4.152 25 N -0.125 5.125 26 N -0.063 5.063 27 N -0.086 5.086 28 H 0.294 0.706 29 C -0.130 4.130 30 C -0.014 4.014 31 H 0.066 0.934 32 H 0.217 0.783 33 H 0.037 0.963 34 H 0.035 0.965 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.106 0.894 46 H 0.104 0.896 47 H 0.091 0.909 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.985 -26.989 3.952 28.421 hybrid contribution 0.303 2.399 0.073 2.419 sum 8.288 -24.590 4.025 26.259 Atomic orbital electron populations 1.69651 1.05128 1.25823 1.57606 1.24765 0.95553 0.97771 1.02979 0.86253 0.78517 0.83474 0.77848 1.21241 1.21658 1.21257 1.19176 0.90982 0.84195 1.42912 0.91245 1.42365 1.05900 1.00077 1.89555 1.20615 0.93430 0.85447 0.97735 1.21678 0.98699 0.92491 1.02576 1.22344 0.97118 0.94035 0.97802 0.89542 1.22750 1.02690 0.92630 0.98440 1.22218 0.91258 0.95489 0.93825 1.48561 1.35124 1.04905 1.45978 1.20052 0.85531 0.81833 0.81230 1.90771 1.30443 1.80090 1.39798 1.19950 0.94962 0.88386 1.01982 0.87032 1.21577 0.94343 0.99685 0.98734 1.21646 0.98424 0.92898 1.02503 1.20009 0.87550 0.98813 1.01078 1.21667 0.99122 0.88580 1.05786 1.74827 0.97662 1.26945 1.13101 1.78576 1.20037 0.87719 1.19998 1.44635 1.12844 1.08919 1.42185 0.70616 1.21150 0.87970 0.97749 1.06154 1.22427 0.95012 0.84755 0.99165 0.93426 0.78311 0.96314 0.96521 0.91562 0.91466 0.89336 0.89939 0.90964 0.91242 0.90236 0.89611 0.90939 0.89712 0.89392 0.89604 0.90935 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.93 13.06 55.49 0.72 -27.20 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.73 -18.09 5.60 -59.90 -0.34 -18.43 16 10 C 0.16 2.86 6.14 -4.04 -0.02 2.83 16 11 C -0.12 -1.62 4.83 -26.73 -0.13 -1.75 16 12 C -0.09 -0.96 3.03 -88.48 -0.27 -1.23 16 13 H 0.09 0.89 8.14 -51.92 -0.42 0.46 16 14 C -0.13 -1.05 5.75 -24.90 -0.14 -1.20 16 15 C 0.09 0.60 6.08 -3.06 -0.02 0.58 16 16 N -0.61 -5.42 3.33 -170.48 -0.57 -5.99 16 17 C 0.53 5.19 6.90 -10.99 -0.08 5.11 16 18 O -0.53 -7.44 16.42 5.56 0.09 -7.35 16 19 C -0.03 -0.20 2.48 -92.78 -0.23 -0.43 16 20 H 0.11 0.51 7.27 -51.93 -0.38 0.14 16 21 C -0.11 -0.56 5.21 -26.44 -0.14 -0.70 16 22 C -0.12 -0.47 5.90 -26.45 -0.16 -0.63 16 23 C -0.04 -0.22 6.30 -27.72 -0.17 -0.40 16 24 C -0.01 -0.11 7.11 -83.13 -0.59 -0.70 16 25 N -0.26 -3.33 12.40 33.16 0.41 -2.92 16 26 N -0.08 -1.06 13.40 60.35 0.81 -0.25 16 27 N -0.37 -3.70 6.70 33.39 0.22 -3.48 16 28 H 0.45 3.50 8.96 -190.08 -1.70 1.80 16 29 C 0.01 0.06 5.94 -82.50 -0.49 -0.43 16 30 C 0.11 1.11 6.36 -2.51 -0.02 1.10 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.38 9.96 7.67 -40.82 -0.31 9.64 16 33 H 0.02 0.34 7.63 -51.93 -0.40 -0.06 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.94 8.04 -51.93 -0.42 0.52 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.73 7.96 -51.93 -0.41 0.32 16 39 H 0.07 0.33 7.80 -51.93 -0.41 -0.07 16 40 H 0.07 0.34 8.01 -51.93 -0.42 -0.07 16 41 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 42 H 0.09 0.32 7.80 -51.92 -0.41 -0.08 16 43 H 0.07 0.25 8.12 -51.93 -0.42 -0.17 16 44 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 45 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.77 8.04 -51.93 -0.42 0.35 16 48 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 LS Contribution 385.89 15.07 5.82 5.82 Total: -1.00 -35.33 385.89 -9.58 -44.91 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -9.03 Total: 3.03 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -2.70 Total: -5.15 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 1.26 Total: -58.27 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: 0.09 Total: -7.35 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.33 -9.58 -44.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754929771.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.714 kcal (2) G-P(sol) polarization free energy of solvation -35.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds