Wall clock time and date at job start Tue Mar 31 2020 17:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99927 * 2 1 4 4 H 1.48500 * 109.47027 * 240.00013 * 3 2 1 5 5 H 1.48501 * 109.47379 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47035 * 120.00125 * 3 2 1 7 7 C 1.38815 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99776 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99912 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99627 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46973 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47022 * 180.02562 * 11 10 9 13 13 H 1.09009 * 110.87998 * 305.69678 * 12 11 10 14 14 C 1.55151 * 111.00654 * 69.57491 * 12 11 10 15 15 C 1.54331 * 102.94096 * 153.57782 * 14 12 11 16 16 N 1.47027 * 107.26834 * 337.80797 * 15 14 12 17 17 C 1.34779 * 125.64291 * 178.97147 * 16 15 14 18 18 O 1.21278 * 119.99228 * 174.63927 * 17 16 15 19 19 C 1.50696 * 120.00466 * 354.64185 * 17 16 15 20 20 H 1.09000 * 109.68658 * 33.26153 * 19 17 16 21 21 C 1.53434 * 109.69041 * 272.71518 * 19 17 16 22 22 C 1.53132 * 109.53935 * 190.60808 * 21 19 17 23 23 C 1.53417 * 109.60942 * 70.01249 * 22 21 19 24 24 C 1.50597 * 108.33921 * 310.19683 * 23 22 21 25 25 N 1.32904 * 129.16307 * 196.61477 * 24 23 22 26 26 N 1.29023 * 108.63678 * 179.77225 * 25 24 23 27 27 N 1.29101 * 110.25516 * 0.02562 * 26 25 24 28 28 H 0.97000 * 126.00450 * 180.02562 * 27 26 25 29 29 C 1.34401 * 107.98907 * 0.07031 * 27 26 25 30 30 C 1.47467 * 108.72330 * 358.97582 * 16 15 14 31 31 H 0.97006 * 120.00005 * 359.97438 * 1 2 3 32 32 H 0.96996 * 120.00162 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.47401 * 59.99768 * 10 9 7 34 34 H 1.09003 * 109.47002 * 299.99616 * 10 9 7 35 35 H 1.09003 * 109.46951 * 299.99657 * 11 10 9 36 36 H 1.09000 * 109.47238 * 59.99678 * 11 10 9 37 37 H 1.09000 * 110.72460 * 271.94217 * 14 12 11 38 38 H 1.09004 * 110.71687 * 35.04263 * 14 12 11 39 39 H 1.08996 * 109.88239 * 97.22479 * 15 14 12 40 40 H 1.09001 * 109.88115 * 218.24322 * 15 14 12 41 41 H 1.08995 * 109.46055 * 310.59827 * 21 19 17 42 42 H 1.09008 * 109.45809 * 70.55105 * 21 19 17 43 43 H 1.08996 * 109.43167 * 309.97279 * 22 21 19 44 44 H 1.08997 * 109.44189 * 190.06273 * 22 21 19 45 45 H 1.09001 * 109.69150 * 190.48437 * 23 22 21 46 46 H 1.09006 * 109.69083 * 69.90870 * 23 22 21 47 47 H 1.08994 * 110.34878 * 265.25132 * 30 16 15 48 48 H 1.09004 * 110.40381 * 142.91421 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 6 1.8287 -6.1448 -0.0016 13 1 2.5382 -6.1842 -0.8282 14 6 2.5436 -6.3736 1.3563 15 6 2.6425 -7.9115 1.4399 16 7 1.6049 -8.4643 0.5570 17 6 1.3772 -9.7743 0.3369 18 8 0.4303 -10.1202 -0.3372 19 6 2.2991 -10.8092 0.9285 20 1 2.6734 -10.4603 1.8909 21 6 3.4756 -11.0587 -0.0243 22 6 4.2624 -12.2862 0.4438 23 6 3.4261 -13.5519 0.2149 24 6 2.0544 -13.3245 0.7936 25 7 1.1124 -14.2126 1.0939 26 7 0.0917 -13.5851 1.5724 27 7 0.3207 -12.3149 1.6004 28 1 -0.2912 -11.6320 1.9170 29 6 1.5554 -12.1049 1.1128 30 6 0.8546 -7.3483 -0.0482 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3880 -0.0016 33 1 2.6840 -3.7150 0.8888 34 1 2.6853 -3.7142 -0.8912 35 1 0.4368 -4.7622 0.8876 36 1 0.4374 -4.7618 -0.8924 37 1 3.5361 -5.9230 1.3504 38 1 1.9466 -5.9777 2.1779 39 1 3.6269 -8.2383 1.1050 40 1 2.4725 -8.2387 2.4656 41 1 3.0967 -11.2332 -1.0312 42 1 4.1303 -10.1871 -0.0289 43 1 4.4895 -12.1882 1.5053 44 1 5.1920 -12.3583 -0.1207 45 1 3.8985 -14.3991 0.7119 46 1 3.3455 -13.7505 -0.8538 47 1 -0.0413 -7.1339 0.5345 48 1 0.5904 -7.5829 -1.0794 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754929771.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:37 Heat of formation + Delta-G solvation = 29.856382 kcal Electronic energy + Delta-G solvation = -28323.285477 eV Core-core repulsion = 24413.563737 eV Total energy + Delta-G solvation = -3909.721740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.57254 -41.35407 -39.15006 -37.74857 -36.83357 -34.94051 -34.54485 -32.73938 -31.49994 -31.20031 -30.59553 -28.83781 -26.24440 -25.33478 -24.40478 -23.79130 -23.64101 -23.06121 -21.24900 -20.85208 -20.41407 -19.16465 -18.97283 -18.47861 -17.25105 -17.14342 -16.73067 -16.51504 -15.95242 -15.69798 -15.42026 -15.31337 -15.15464 -14.91626 -14.67257 -14.56498 -14.35619 -13.94129 -13.89667 -13.33345 -13.20574 -13.06104 -12.85321 -12.72875 -12.70418 -12.46629 -12.37423 -12.32827 -12.21821 -11.97534 -11.93813 -11.64666 -11.62266 -11.51866 -11.48678 -11.36364 -10.94964 -10.89112 -9.99120 -9.74582 -8.98447 -7.94434 -5.23297 0.44053 1.34275 1.38676 1.48419 1.51465 1.57620 1.71025 1.84574 2.57246 3.07756 3.30958 3.39536 3.44786 3.60257 3.65609 3.72804 3.84280 3.91469 4.07537 4.19128 4.25673 4.29588 4.33465 4.36099 4.44385 4.48401 4.60531 4.62438 4.63364 4.79627 4.85480 4.88527 4.90934 4.96803 5.00075 5.07392 5.11523 5.18799 5.23458 5.30539 5.32818 5.40687 5.42360 5.48590 5.51335 5.78690 6.28197 6.39139 6.92915 7.33061 7.33956 8.12178 8.32933 9.29075 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.032747 B = 0.001867 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.830862 B =14993.767609 C =15503.107162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.975 3.025 4 H -0.277 1.277 5 H -0.298 1.298 6 H -0.275 1.275 7 C -0.245 4.245 8 H 0.079 0.921 9 N -0.752 5.752 10 C 0.154 3.846 11 C -0.104 4.104 12 C -0.084 4.084 13 H 0.092 0.908 14 C -0.126 4.126 15 C 0.094 3.906 16 N -0.608 5.608 17 C 0.526 3.474 18 O -0.584 6.584 19 C -0.021 4.021 20 H 0.147 0.853 21 C -0.104 4.104 22 C -0.108 4.108 23 C -0.039 4.039 24 C -0.021 4.021 25 N -0.293 5.293 26 N -0.119 5.119 27 N -0.364 5.364 28 H 0.455 0.545 29 C 0.007 3.993 30 C 0.110 3.890 31 H 0.251 0.749 32 H 0.372 0.628 33 H 0.032 0.968 34 H 0.018 0.982 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.059 0.941 42 H 0.113 0.887 43 H 0.087 0.913 44 H 0.109 0.891 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.065 0.935 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.832 -25.749 4.940 29.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.803 3.197 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.201 1.201 7 C -0.376 4.376 8 H 0.097 0.903 9 N -0.394 5.394 10 C 0.028 3.972 11 C -0.142 4.142 12 C -0.103 4.103 13 H 0.111 0.889 14 C -0.163 4.163 15 C -0.027 4.027 16 N -0.340 5.340 17 C 0.315 3.685 18 O -0.465 6.465 19 C -0.044 4.044 20 H 0.165 0.835 21 C -0.143 4.143 22 C -0.145 4.145 23 C -0.078 4.078 24 C -0.163 4.163 25 N -0.158 5.158 26 N -0.097 5.097 27 N -0.083 5.083 28 H 0.301 0.699 29 C -0.130 4.130 30 C -0.013 4.013 31 H 0.059 0.941 32 H 0.203 0.797 33 H 0.050 0.950 34 H 0.036 0.964 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.122 0.878 40 H 0.111 0.889 41 H 0.078 0.922 42 H 0.131 0.869 43 H 0.105 0.895 44 H 0.127 0.873 45 H 0.115 0.885 46 H 0.104 0.896 47 H 0.083 0.917 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.504 -27.177 4.876 29.911 hybrid contribution -0.769 2.429 -0.237 2.559 sum 10.735 -24.748 4.639 27.372 Atomic orbital electron populations 1.69818 1.06698 1.26119 1.59624 1.25623 0.96430 1.01319 1.03866 0.85191 0.77163 0.78995 0.78302 1.20357 1.22413 1.20106 1.19633 0.91608 0.85369 1.41037 0.90349 1.42661 1.05694 1.01591 1.89485 1.20812 0.94068 0.84359 0.97987 1.21509 0.97883 0.93053 1.01790 1.22167 0.96848 0.91621 0.99711 0.88949 1.22755 1.02736 0.94416 0.96418 1.22449 0.91816 0.93755 0.94717 1.48587 1.35295 1.04320 1.45805 1.20540 0.85181 0.82324 0.80482 1.90757 1.32707 1.80856 1.42152 1.20128 0.94352 0.86028 1.03870 0.83530 1.21666 0.93948 1.01506 0.97143 1.21654 0.98407 0.90648 1.03813 1.20232 0.85985 1.00737 1.00854 1.22371 1.00170 0.88394 1.05317 1.74774 0.98565 1.28279 1.14160 1.78514 1.20682 0.88792 1.21722 1.44698 1.13395 1.08512 1.41719 0.69858 1.21644 0.87551 0.98804 1.05043 1.22250 0.95123 0.85505 0.98404 0.94081 0.79675 0.95043 0.96367 0.91990 0.92768 0.88192 0.90634 0.87817 0.88863 0.92225 0.86897 0.89480 0.87303 0.88503 0.89642 0.91664 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.07 13.06 21.65 0.28 -58.79 16 2 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 3 Si 0.97 45.15 29.55 68.60 2.03 47.17 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.24 -13.33 9.99 84.03 0.84 -12.49 16 8 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 9 N -0.75 -37.03 5.60 -343.44 -1.92 -38.95 16 10 C 0.15 5.49 6.14 86.38 0.53 6.02 16 11 C -0.10 -2.85 4.83 30.60 0.15 -2.70 16 12 C -0.08 -1.57 3.03 -9.40 -0.03 -1.60 16 13 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 14 C -0.13 -1.65 5.75 31.78 0.18 -1.47 16 15 C 0.09 0.77 6.08 86.73 0.53 1.29 16 16 N -0.61 -9.22 3.33 -811.68 -2.70 -11.93 16 17 C 0.53 9.42 6.90 87.66 0.60 10.02 16 18 O -0.58 -16.29 16.42 -3.02 -0.05 -16.34 16 19 C -0.02 -0.23 2.48 -12.20 -0.03 -0.26 16 20 H 0.15 0.60 7.27 -2.39 -0.02 0.59 16 21 C -0.10 -0.73 5.21 30.78 0.16 -0.57 16 22 C -0.11 -0.44 5.90 30.78 0.18 -0.26 16 23 C -0.04 -0.42 6.30 29.96 0.19 -0.23 16 24 C -0.02 -0.41 7.11 41.75 0.30 -0.12 16 25 N -0.29 -7.65 12.40 -49.00 -0.61 -8.26 16 26 N -0.12 -3.08 13.40 37.02 0.50 -2.59 16 27 N -0.36 -7.36 6.70 -48.27 -0.32 -7.68 16 28 H 0.45 7.23 8.96 -219.68 -1.97 5.26 16 29 C 0.01 0.12 5.94 41.50 0.25 0.37 16 30 C 0.11 2.16 6.36 86.85 0.55 2.71 16 31 H 0.25 14.81 8.31 -92.70 -0.77 14.04 16 32 H 0.37 19.70 7.67 -92.71 -0.71 18.99 16 33 H 0.03 1.07 7.63 -2.39 -0.02 1.05 16 34 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 1.75 8.04 -2.39 -0.02 1.73 16 36 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.13 7.96 -2.39 -0.02 1.11 16 39 H 0.10 0.29 7.80 -2.39 -0.02 0.28 16 40 H 0.09 0.42 8.01 -2.39 -0.02 0.40 16 41 H 0.06 0.69 8.08 -2.39 -0.02 0.67 16 42 H 0.11 0.23 7.80 -2.38 -0.02 0.21 16 43 H 0.09 0.17 8.12 -2.39 -0.02 0.15 16 44 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 45 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 47 H 0.07 1.37 8.04 -2.39 -0.02 1.35 16 48 H 0.06 1.45 8.09 -2.38 -0.02 1.43 16 Total: -1.00 -79.49 385.89 0.37 -79.12 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -1.70 Total: 21.62 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 4.87 Total: -3.37 kcal Atomic # 7 Polarization: -123.42 SS G_CDS: -4.78 Total: -128.19 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.05 Total: -16.34 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -79.49 0.37 -79.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754929771.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.972 kcal (2) G-P(sol) polarization free energy of solvation -79.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds