Wall clock time and date at job start Tue Mar 31 2020 17:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00189 * 2 1 4 4 H 1.48500 * 109.47259 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47552 * 300.00427 * 3 2 1 6 6 H 1.48508 * 109.47174 * 60.00530 * 3 2 1 7 7 C 1.38813 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00010 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00003 * 359.97438 * 7 2 1 10 10 C 1.46491 * 119.99877 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47074 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47129 * 180.02562 * 11 10 9 13 13 H 1.09001 * 110.91711 * 51.09928 * 12 11 10 14 14 C 1.55156 * 111.00026 * 287.19437 * 12 11 10 15 15 C 1.54331 * 102.93778 * 206.42656 * 14 12 11 16 16 N 1.47015 * 107.27312 * 22.19568 * 15 14 12 17 17 C 1.34778 * 125.64876 * 181.08269 * 16 15 14 18 18 O 1.21284 * 120.00174 * 174.57919 * 17 16 15 19 19 C 1.50696 * 119.99887 * 354.57944 * 17 16 15 20 20 H 1.08993 * 109.69292 * 33.94749 * 19 17 16 21 21 C 1.53439 * 109.69185 * 273.40024 * 19 17 16 22 22 C 1.53110 * 109.55523 * 190.56536 * 21 19 17 23 23 C 1.53417 * 109.58426 * 70.04818 * 22 21 19 24 24 C 1.50594 * 108.33641 * 310.17943 * 23 22 21 25 25 N 1.32911 * 129.16238 * 196.52934 * 24 23 22 26 26 N 1.29021 * 108.63601 * 179.83306 * 25 24 23 27 27 N 1.29113 * 110.25631 * 0.10017 * 26 25 24 28 28 H 0.97003 * 126.00500 * 179.97438 * 27 26 25 29 29 C 1.34394 * 107.98688 * 0.02562 * 27 26 25 30 30 C 1.47422 * 108.70488 * 1.05940 * 16 15 14 31 31 H 0.97003 * 119.99771 * 359.97438 * 1 2 3 32 32 H 0.96995 * 119.99514 * 0.02562 * 9 7 2 33 33 H 1.09000 * 109.47060 * 60.00878 * 10 9 7 34 34 H 1.08998 * 109.47956 * 300.00001 * 10 9 7 35 35 H 1.09002 * 109.47151 * 60.00227 * 11 10 9 36 36 H 1.08998 * 109.47225 * 300.00359 * 11 10 9 37 37 H 1.09000 * 110.72147 * 88.06506 * 14 12 11 38 38 H 1.08993 * 110.87548 * 324.85746 * 14 12 11 39 39 H 1.09000 * 109.88122 * 262.77385 * 15 14 12 40 40 H 1.09002 * 109.88125 * 141.61549 * 15 14 12 41 41 H 1.09005 * 109.45670 * 310.58341 * 21 19 17 42 42 H 1.08990 * 109.45822 * 70.55276 * 21 19 17 43 43 H 1.09000 * 109.45139 * 190.08515 * 22 21 19 44 44 H 1.09000 * 109.44896 * 310.03714 * 22 21 19 45 45 H 1.09000 * 109.69137 * 69.89298 * 23 22 21 46 46 H 1.09010 * 109.69316 * 190.46929 * 23 22 21 47 47 H 1.08996 * 110.36916 * 94.70911 * 30 16 15 48 48 H 1.09001 * 110.36984 * 217.03787 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6567 -0.0017 11 6 1.0637 -4.8197 -0.0021 12 6 1.8287 -6.1448 -0.0026 13 1 2.5771 -6.1624 0.7897 14 6 2.4775 -6.4117 -1.3865 15 6 2.5734 -7.9513 -1.4320 16 7 1.5799 -8.4787 -0.4853 17 6 1.3646 -9.7820 -0.2175 18 8 0.5853 -10.1010 0.6554 19 6 2.0921 -10.8427 -1.0026 20 1 3.0896 -10.4884 -1.2620 21 6 1.3096 -11.1670 -2.2820 22 6 1.9003 -12.4162 -2.9413 23 6 1.5836 -13.6486 -2.0843 24 6 1.9697 -13.3473 -0.6603 25 7 2.1553 -14.1855 0.3544 26 7 2.4816 -13.5024 1.3991 27 7 2.5174 -12.2431 1.1166 28 1 2.7363 -11.5264 1.7325 29 6 2.1969 -12.0995 -0.1807 30 6 0.8586 -7.3460 0.1230 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3880 -0.0005 33 1 2.6852 -3.7149 0.8879 34 1 2.6840 -3.7142 -0.8921 35 1 0.4367 -4.7614 -0.8918 36 1 0.4373 -4.7626 0.8881 37 1 3.4688 -5.9618 -1.4409 38 1 1.8426 -6.0409 -2.1911 39 1 3.5730 -8.2694 -1.1360 40 1 2.3518 -8.3070 -2.4383 41 1 0.2642 -11.3484 -2.0321 42 1 1.3773 -10.3260 -2.9720 43 1 1.4666 -12.5426 -3.9333 44 1 2.9809 -12.3036 -3.0293 45 1 0.5174 -13.8685 -2.1371 46 1 2.1540 -14.5042 -2.4463 47 1 -0.0641 -7.1471 -0.4221 48 1 0.6439 -7.5521 1.1716 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754929773.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:44 Heat of formation + Delta-G solvation = 54.595121 kcal Electronic energy + Delta-G solvation = -28310.154269 eV Core-core repulsion = 24401.505281 eV Total energy + Delta-G solvation = -3908.648988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.80967 -40.61077 -38.34512 -37.16639 -35.27222 -34.15690 -33.15812 -31.35028 -30.73980 -30.49721 -29.73044 -27.58405 -25.32775 -24.03111 -23.40896 -23.19298 -22.97326 -21.60611 -20.34718 -20.21482 -19.74068 -18.31145 -17.83635 -17.18300 -16.44696 -16.36771 -15.60786 -15.30280 -15.12603 -14.77812 -14.52362 -14.35695 -14.20560 -14.00304 -13.69813 -13.49711 -13.24368 -13.16384 -12.82044 -12.66635 -12.37796 -12.05085 -11.84127 -11.82170 -11.76014 -11.55627 -11.41681 -11.17242 -11.02950 -10.89162 -10.75985 -10.68204 -10.58310 -10.42710 -10.21320 -10.03652 -9.74603 -9.26811 -9.02595 -8.92415 -6.97302 -5.81402 -3.10420 1.19540 2.06549 2.17168 2.38267 2.55106 3.39492 3.44932 3.47383 3.69233 3.93237 4.00522 4.21969 4.31810 4.35881 4.45110 4.53938 4.57776 4.64027 4.71868 4.80447 4.91972 4.92977 5.08538 5.14327 5.22589 5.29631 5.36337 5.45715 5.50135 5.51082 5.54320 5.57613 5.63533 5.70338 5.71535 5.74653 5.84544 5.92756 5.98458 6.14496 6.27653 6.28699 6.48421 6.75454 6.80050 7.07497 7.65316 7.65766 8.13461 8.37622 9.48646 10.06794 10.40692 11.41546 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.032199 B = 0.001853 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.379953 B =15105.674078 C =15416.768212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.735 5.735 10 C 0.155 3.845 11 C -0.116 4.116 12 C -0.094 4.094 13 H 0.085 0.915 14 C -0.127 4.127 15 C 0.095 3.905 16 N -0.612 5.612 17 C 0.527 3.473 18 O -0.535 6.535 19 C -0.029 4.029 20 H 0.112 0.888 21 C -0.105 4.105 22 C -0.117 4.117 23 C -0.035 4.035 24 C -0.011 4.011 25 N -0.260 5.260 26 N -0.084 5.084 27 N -0.367 5.367 28 H 0.448 0.552 29 C 0.007 3.993 30 C 0.107 3.893 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.017 0.983 34 H 0.019 0.981 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.074 0.926 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.099 -25.915 -7.539 27.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.379 5.379 10 C 0.028 3.972 11 C -0.154 4.154 12 C -0.113 4.113 13 H 0.104 0.896 14 C -0.165 4.165 15 C -0.028 4.028 16 N -0.346 5.346 17 C 0.314 3.686 18 O -0.411 6.411 19 C -0.053 4.053 20 H 0.130 0.870 21 C -0.143 4.143 22 C -0.155 4.155 23 C -0.075 4.075 24 C -0.152 4.152 25 N -0.125 5.125 26 N -0.063 5.063 27 N -0.086 5.086 28 H 0.294 0.706 29 C -0.130 4.130 30 C -0.015 4.015 31 H 0.065 0.935 32 H 0.217 0.783 33 H 0.034 0.966 34 H 0.037 0.963 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.091 0.909 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.092 0.908 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.978 -27.255 -5.990 28.538 hybrid contribution 0.188 2.398 -0.217 2.415 sum 6.166 -24.857 -6.208 26.352 Atomic orbital electron populations 1.69669 1.05127 1.25591 1.57773 1.24763 0.95556 0.97778 1.03016 0.86113 0.78753 0.84062 0.77228 1.20555 1.21827 1.21840 1.19270 0.91045 0.84177 1.42648 0.91145 1.42378 1.05915 1.00091 1.89522 1.20613 0.93433 0.85469 0.97715 1.21678 0.98690 0.92448 1.02606 1.22342 0.97436 0.94068 0.97483 0.89642 1.22756 1.02944 0.92559 0.98249 1.22223 0.91841 0.95790 0.92936 1.48539 1.38071 1.05018 1.42936 1.20051 0.82913 0.81954 0.83695 1.90771 1.36901 1.81087 1.32386 1.19951 1.01740 0.88771 0.94828 0.87005 1.21574 1.00125 0.99350 0.93300 1.21645 1.01816 0.92992 0.99017 1.20008 1.02346 0.98797 0.86300 1.21668 1.06632 0.88752 0.98135 1.74828 1.14820 1.26780 0.96106 1.78580 1.20257 0.87045 1.20451 1.44638 1.45392 1.09229 1.09293 0.70600 1.21146 1.08197 0.97736 0.85928 1.22430 0.95430 0.84295 0.99307 0.93523 0.78304 0.96562 0.96323 0.91473 0.91486 0.89424 0.89845 0.91236 0.90959 0.90243 0.89641 0.89714 0.90929 0.89612 0.89393 0.90793 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 2 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.10 5.60 -59.91 -0.34 -18.43 16 10 C 0.16 2.86 6.16 -4.04 -0.02 2.84 16 11 C -0.12 -1.62 4.84 -26.73 -0.13 -1.75 16 12 C -0.09 -0.97 3.01 -88.47 -0.27 -1.23 16 13 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 14 C -0.13 -1.04 5.90 -24.89 -0.15 -1.19 16 15 C 0.09 0.60 6.12 -3.06 -0.02 0.58 16 16 N -0.61 -5.40 3.33 -170.52 -0.57 -5.97 16 17 C 0.53 5.18 6.91 -10.99 -0.08 5.10 16 18 O -0.53 -7.43 16.32 5.55 0.09 -7.34 16 19 C -0.03 -0.20 2.47 -92.78 -0.23 -0.43 16 20 H 0.11 0.51 7.24 -51.93 -0.38 0.14 16 21 C -0.11 -0.56 5.21 -26.45 -0.14 -0.70 16 22 C -0.12 -0.47 5.90 -26.46 -0.16 -0.63 16 23 C -0.04 -0.22 6.30 -27.72 -0.17 -0.40 16 24 C -0.01 -0.12 7.11 -83.12 -0.59 -0.71 16 25 N -0.26 -3.33 12.40 33.16 0.41 -2.92 16 26 N -0.08 -1.06 13.40 60.35 0.81 -0.25 16 27 N -0.37 -3.71 6.68 33.39 0.22 -3.49 16 28 H 0.45 3.52 8.96 -190.07 -1.70 1.82 16 29 C 0.01 0.06 5.94 -82.50 -0.49 -0.43 16 30 C 0.11 1.10 6.40 -2.53 -0.02 1.08 16 31 H 0.25 7.35 8.31 -40.82 -0.34 7.02 16 32 H 0.38 9.95 7.67 -40.82 -0.31 9.63 16 33 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.02 0.34 7.75 -51.93 -0.40 -0.06 16 35 H 0.07 0.95 7.98 -51.93 -0.41 0.53 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.72 7.92 -51.93 -0.41 0.31 16 39 H 0.07 0.34 7.93 -51.93 -0.41 -0.07 16 40 H 0.07 0.33 7.78 -51.93 -0.40 -0.08 16 41 H 0.08 0.54 8.08 -51.93 -0.42 0.13 16 42 H 0.09 0.32 7.78 -51.93 -0.40 -0.09 16 43 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.07 0.25 8.12 -51.93 -0.42 -0.17 16 45 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.09 0.47 8.14 -51.92 -0.42 0.05 16 47 H 0.07 0.78 8.04 -51.93 -0.42 0.36 16 48 H 0.08 0.91 7.99 -51.93 -0.41 0.49 16 LS Contribution 385.77 15.07 5.81 5.81 Total: -1.00 -35.39 385.77 -9.58 -44.96 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -9.02 Total: 2.92 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -2.70 Total: -5.14 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: 1.26 Total: -58.24 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: 0.09 Total: -7.34 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.39 -9.58 -44.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754929773.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.559 kcal (2) G-P(sol) polarization free energy of solvation -35.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds