Wall clock time and date at job start Tue Mar 31 2020 17:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00189 * 2 1 4 4 H 1.48500 * 109.47259 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47552 * 300.00427 * 3 2 1 6 6 H 1.48508 * 109.47174 * 60.00530 * 3 2 1 7 7 C 1.38813 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00010 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00003 * 359.97438 * 7 2 1 10 10 C 1.46491 * 119.99877 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47074 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47129 * 180.02562 * 11 10 9 13 13 H 1.09001 * 110.91711 * 51.09928 * 12 11 10 14 14 C 1.55156 * 111.00026 * 287.19437 * 12 11 10 15 15 C 1.54331 * 102.93778 * 206.42656 * 14 12 11 16 16 N 1.47015 * 107.27312 * 22.19568 * 15 14 12 17 17 C 1.34778 * 125.64876 * 181.08269 * 16 15 14 18 18 O 1.21284 * 120.00174 * 174.57919 * 17 16 15 19 19 C 1.50696 * 119.99887 * 354.57944 * 17 16 15 20 20 H 1.08993 * 109.69292 * 33.94749 * 19 17 16 21 21 C 1.53439 * 109.69185 * 273.40024 * 19 17 16 22 22 C 1.53110 * 109.55523 * 190.56536 * 21 19 17 23 23 C 1.53417 * 109.58426 * 70.04818 * 22 21 19 24 24 C 1.50594 * 108.33641 * 310.17943 * 23 22 21 25 25 N 1.32911 * 129.16238 * 196.52934 * 24 23 22 26 26 N 1.29021 * 108.63601 * 179.83306 * 25 24 23 27 27 N 1.29113 * 110.25631 * 0.10017 * 26 25 24 28 28 H 0.97003 * 126.00500 * 179.97438 * 27 26 25 29 29 C 1.34394 * 107.98688 * 0.02562 * 27 26 25 30 30 C 1.47422 * 108.70488 * 1.05940 * 16 15 14 31 31 H 0.97003 * 119.99771 * 359.97438 * 1 2 3 32 32 H 0.96995 * 119.99514 * 0.02562 * 9 7 2 33 33 H 1.09000 * 109.47060 * 60.00878 * 10 9 7 34 34 H 1.08998 * 109.47956 * 300.00001 * 10 9 7 35 35 H 1.09002 * 109.47151 * 60.00227 * 11 10 9 36 36 H 1.08998 * 109.47225 * 300.00359 * 11 10 9 37 37 H 1.09000 * 110.72147 * 88.06506 * 14 12 11 38 38 H 1.08993 * 110.87548 * 324.85746 * 14 12 11 39 39 H 1.09000 * 109.88122 * 262.77385 * 15 14 12 40 40 H 1.09002 * 109.88125 * 141.61549 * 15 14 12 41 41 H 1.09005 * 109.45670 * 310.58341 * 21 19 17 42 42 H 1.08990 * 109.45822 * 70.55276 * 21 19 17 43 43 H 1.09000 * 109.45139 * 190.08515 * 22 21 19 44 44 H 1.09000 * 109.44896 * 310.03714 * 22 21 19 45 45 H 1.09000 * 109.69137 * 69.89298 * 23 22 21 46 46 H 1.09010 * 109.69316 * 190.46929 * 23 22 21 47 47 H 1.08996 * 110.36916 * 94.70911 * 30 16 15 48 48 H 1.09001 * 110.36984 * 217.03787 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6567 -0.0017 11 6 1.0637 -4.8197 -0.0021 12 6 1.8287 -6.1448 -0.0026 13 1 2.5771 -6.1624 0.7897 14 6 2.4775 -6.4117 -1.3865 15 6 2.5734 -7.9513 -1.4320 16 7 1.5799 -8.4787 -0.4853 17 6 1.3646 -9.7820 -0.2175 18 8 0.5853 -10.1010 0.6554 19 6 2.0921 -10.8427 -1.0026 20 1 3.0896 -10.4884 -1.2620 21 6 1.3096 -11.1670 -2.2820 22 6 1.9003 -12.4162 -2.9413 23 6 1.5836 -13.6486 -2.0843 24 6 1.9697 -13.3473 -0.6603 25 7 2.1553 -14.1855 0.3544 26 7 2.4816 -13.5024 1.3991 27 7 2.5174 -12.2431 1.1166 28 1 2.7363 -11.5264 1.7325 29 6 2.1969 -12.0995 -0.1807 30 6 0.8586 -7.3460 0.1230 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3880 -0.0005 33 1 2.6852 -3.7149 0.8879 34 1 2.6840 -3.7142 -0.8921 35 1 0.4367 -4.7614 -0.8918 36 1 0.4373 -4.7626 0.8881 37 1 3.4688 -5.9618 -1.4409 38 1 1.8426 -6.0409 -2.1911 39 1 3.5730 -8.2694 -1.1360 40 1 2.3518 -8.3070 -2.4383 41 1 0.2642 -11.3484 -2.0321 42 1 1.3773 -10.3260 -2.9720 43 1 1.4666 -12.5426 -3.9333 44 1 2.9809 -12.3036 -3.0293 45 1 0.5174 -13.8685 -2.1371 46 1 2.1540 -14.5042 -2.4463 47 1 -0.0641 -7.1471 -0.4221 48 1 0.6439 -7.5521 1.1716 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754929773.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:43 Heat of formation + Delta-G solvation = 29.614278 kcal Electronic energy + Delta-G solvation = -28311.237520 eV Core-core repulsion = 24401.505281 eV Total energy + Delta-G solvation = -3909.732238 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.56948 -41.35536 -39.14774 -37.75130 -36.84472 -34.93757 -34.54967 -32.75219 -31.50044 -31.19847 -30.59796 -28.83545 -26.25599 -25.34251 -24.40180 -23.79291 -23.63124 -23.05255 -21.28606 -20.84844 -20.39990 -19.16390 -19.00039 -18.49858 -17.26916 -17.16732 -16.71498 -16.28559 -15.97340 -15.85691 -15.43364 -15.29081 -15.17655 -14.91305 -14.76684 -14.55749 -14.32452 -13.94680 -13.83972 -13.33801 -13.20966 -13.09602 -12.86561 -12.78783 -12.69637 -12.47324 -12.40847 -12.29815 -12.12575 -11.97761 -11.95086 -11.64809 -11.61367 -11.52913 -11.48370 -11.36835 -10.95097 -10.92130 -9.98914 -9.74116 -8.99210 -7.95569 -5.24299 0.44296 1.34566 1.38739 1.47951 1.48687 1.58715 1.71315 1.84693 2.56213 3.07633 3.30788 3.38769 3.44499 3.59852 3.64395 3.75464 3.82870 3.91176 4.07637 4.18162 4.24109 4.29027 4.35046 4.37532 4.43874 4.48126 4.60225 4.61963 4.63621 4.79322 4.85054 4.87543 4.90759 4.95940 5.00990 5.07429 5.11362 5.18617 5.23344 5.31311 5.31780 5.40419 5.42094 5.47666 5.51035 5.78984 6.27595 6.39194 6.93036 7.33236 7.33315 8.11240 8.32143 9.28350 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.032199 B = 0.001853 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.379953 B =15105.674078 C =15416.768212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.296 1.296 7 C -0.243 4.243 8 H 0.078 0.922 9 N -0.751 5.751 10 C 0.153 3.847 11 C -0.103 4.103 12 C -0.085 4.085 13 H 0.087 0.913 14 C -0.125 4.125 15 C 0.094 3.906 16 N -0.608 5.608 17 C 0.526 3.474 18 O -0.585 6.585 19 C -0.021 4.021 20 H 0.148 0.852 21 C -0.105 4.105 22 C -0.107 4.107 23 C -0.039 4.039 24 C -0.022 4.022 25 N -0.293 5.293 26 N -0.119 5.119 27 N -0.364 5.364 28 H 0.455 0.545 29 C 0.007 3.993 30 C 0.109 3.891 31 H 0.251 0.749 32 H 0.372 0.628 33 H 0.016 0.984 34 H 0.032 0.968 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.059 0.941 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.070 0.930 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.218 -26.163 -9.967 29.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.220 1.220 6 H -0.223 1.223 7 C -0.375 4.375 8 H 0.096 0.904 9 N -0.394 5.394 10 C 0.027 3.973 11 C -0.141 4.141 12 C -0.105 4.105 13 H 0.105 0.895 14 C -0.163 4.163 15 C -0.027 4.027 16 N -0.340 5.340 17 C 0.315 3.685 18 O -0.465 6.465 19 C -0.044 4.044 20 H 0.165 0.835 21 C -0.143 4.143 22 C -0.145 4.145 23 C -0.078 4.078 24 C -0.163 4.163 25 N -0.158 5.158 26 N -0.097 5.097 27 N -0.083 5.083 28 H 0.302 0.698 29 C -0.130 4.130 30 C -0.013 4.013 31 H 0.059 0.941 32 H 0.204 0.796 33 H 0.034 0.966 34 H 0.049 0.951 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.121 0.879 41 H 0.078 0.922 42 H 0.131 0.869 43 H 0.127 0.873 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.115 0.885 47 H 0.088 0.912 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.161 -27.533 -8.426 29.928 hybrid contribution -0.480 2.459 0.553 2.566 sum 7.682 -25.074 -7.874 27.380 Atomic orbital electron populations 1.69824 1.06670 1.25993 1.59710 1.25607 0.96437 1.01266 1.03884 0.85065 0.78329 0.79723 0.76603 1.18803 1.21967 1.22299 1.19699 0.91589 0.85377 1.40827 0.90417 1.42662 1.05720 1.01555 1.89435 1.20808 0.94103 0.84474 0.97870 1.21505 0.97835 0.92867 1.01940 1.22164 0.97087 0.91813 0.99445 0.89476 1.22761 1.03007 0.94309 0.96209 1.22456 0.92286 0.94117 0.93883 1.48565 1.38121 1.04391 1.42924 1.20537 0.82334 0.82491 0.83147 1.90758 1.39235 1.81832 1.34689 1.20129 1.03359 0.86477 0.94415 0.83486 1.21662 0.98739 1.01087 0.92793 1.21652 1.02824 0.90813 0.99226 1.20232 1.02429 1.00615 0.84533 1.22371 1.05977 0.88686 0.99249 1.74775 1.15916 1.28037 0.97050 1.78517 1.22109 0.88080 1.21018 1.44700 1.44793 1.08841 1.09959 0.69849 1.21640 1.07023 0.98733 0.85618 1.22252 0.95573 0.85019 0.98502 0.94050 0.79604 0.96644 0.95054 0.91592 0.92830 0.88546 0.90062 0.88740 0.87932 0.92237 0.86945 0.87311 0.89465 0.89654 0.88502 0.91191 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.95 13.06 21.65 0.28 -58.66 16 2 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 3 Si 0.97 45.27 29.55 68.60 2.03 47.29 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 7 C -0.24 -13.27 9.99 84.03 0.84 -12.43 16 8 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.75 -37.01 5.60 -343.46 -1.92 -38.93 16 10 C 0.15 5.51 6.16 86.38 0.53 6.05 16 11 C -0.10 -2.82 4.84 30.60 0.15 -2.67 16 12 C -0.09 -1.62 3.01 -9.40 -0.03 -1.65 16 13 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 14 C -0.13 -1.62 5.90 31.78 0.19 -1.44 16 15 C 0.09 0.75 6.12 86.73 0.53 1.29 16 16 N -0.61 -9.18 3.33 -811.79 -2.70 -11.88 16 17 C 0.53 9.39 6.91 87.66 0.61 10.00 16 18 O -0.58 -16.27 16.32 -3.04 -0.05 -16.32 16 19 C -0.02 -0.22 2.47 -12.19 -0.03 -0.25 16 20 H 0.15 0.60 7.24 -2.39 -0.02 0.58 16 21 C -0.10 -0.73 5.21 30.78 0.16 -0.57 16 22 C -0.11 -0.44 5.90 30.77 0.18 -0.26 16 23 C -0.04 -0.41 6.30 29.95 0.19 -0.23 16 24 C -0.02 -0.42 7.11 41.75 0.30 -0.12 16 25 N -0.29 -7.65 12.40 -48.99 -0.61 -8.26 16 26 N -0.12 -3.09 13.40 37.02 0.50 -2.59 16 27 N -0.36 -7.35 6.68 -48.27 -0.32 -7.67 16 28 H 0.45 7.24 8.96 -219.67 -1.97 5.27 16 29 C 0.01 0.13 5.94 41.50 0.25 0.38 16 30 C 0.11 2.14 6.40 86.86 0.56 2.69 16 31 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 32 H 0.37 19.67 7.67 -92.71 -0.71 18.96 16 33 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.03 1.07 7.75 -2.39 -0.02 1.05 16 35 H 0.07 1.82 7.98 -2.39 -0.02 1.80 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.13 7.92 -2.39 -0.02 1.11 16 39 H 0.09 0.38 7.93 -2.39 -0.02 0.37 16 40 H 0.10 0.31 7.78 -2.39 -0.02 0.29 16 41 H 0.06 0.69 8.08 -2.38 -0.02 0.67 16 42 H 0.11 0.23 7.78 -2.39 -0.02 0.21 16 43 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.09 0.17 8.12 -2.39 -0.02 0.15 16 45 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.10 0.84 8.14 -2.38 -0.02 0.83 16 47 H 0.07 1.43 8.04 -2.39 -0.02 1.41 16 48 H 0.06 1.43 7.99 -2.39 -0.02 1.41 16 Total: -1.00 -79.53 385.77 0.39 -79.14 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -1.70 Total: 21.17 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 4.88 Total: -3.29 kcal Atomic # 7 Polarization: -123.22 SS G_CDS: -4.78 Total: -128.00 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.05 Total: -16.32 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -79.53 0.39 -79.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754929773.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.755 kcal (2) G-P(sol) polarization free energy of solvation -79.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds