Wall clock time and date at job start Tue Mar 31 2020 17:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30844 * 126.46720 * 2 1 4 4 N 1.28910 * 109.74074 * 179.78626 * 3 2 1 5 5 C 1.29833 * 109.48227 * 0.02562 * 4 3 2 6 6 N 1.34695 * 126.46783 * 179.69157 * 2 1 3 7 7 C 1.46263 * 128.84379 * 0.08630 * 6 2 1 8 8 C 1.53320 * 108.72605 * 197.13315 * 7 6 2 9 9 H 1.09002 * 109.44947 * 69.73496 * 8 7 6 10 10 C 1.50702 * 109.43393 * 189.67616 * 8 7 6 11 11 O 1.21287 * 119.99928 * 0.09855 * 10 8 7 12 12 N 1.34770 * 120.00147 * 180.10038 * 10 8 7 13 13 C 1.46500 * 120.00433 * 180.02562 * 12 10 8 14 14 H 1.09003 * 110.63906 * 325.69961 * 13 12 10 15 15 C 1.55153 * 110.72084 * 88.84130 * 13 12 10 16 16 C 1.55118 * 101.48673 * 153.73719 * 15 13 12 17 17 N 1.47422 * 104.94152 * 323.22172 * 16 15 13 18 18 C 1.36939 * 125.64863 * 204.03736 * 17 16 15 19 19 H 1.08004 * 120.00140 * 179.97438 * 18 17 16 20 20 C 1.38823 * 120.00009 * 359.96157 * 18 17 16 21 21 N 1.31620 * 119.99443 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47489 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47195 * 119.99930 * 22 20 18 25 25 H 1.48501 * 109.46889 * 239.99762 * 22 20 18 26 26 C 1.47018 * 108.70422 * 24.00418 * 17 16 15 27 27 H 1.09005 * 109.88311 * 239.52511 * 26 17 16 28 28 C 1.52998 * 110.01333 * 118.43115 * 26 17 16 29 29 C 1.53134 * 109.58100 * 309.69840 * 8 7 6 30 30 C 1.50794 * 128.52487 * 179.89487 * 5 4 3 31 31 H 1.08994 * 109.47169 * 90.02382 * 1 2 3 32 32 H 1.09002 * 109.46943 * 210.02754 * 1 2 3 33 33 H 1.09002 * 109.46408 * 330.02284 * 1 2 3 34 34 H 1.09003 * 109.59422 * 77.35844 * 7 6 2 35 35 H 1.09001 * 109.71806 * 316.98069 * 7 6 2 36 36 H 0.97006 * 119.99560 * 359.97438 * 12 10 8 37 37 H 1.09006 * 111.00116 * 271.94226 * 15 13 12 38 38 H 1.09004 * 111.00550 * 35.79059 * 15 13 12 39 39 H 1.08998 * 110.42108 * 204.29307 * 16 15 13 40 40 H 1.09000 * 110.30069 * 82.08980 * 16 15 13 41 41 H 0.97004 * 119.99053 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.47053 * 302.11442 * 28 26 17 43 43 H 1.09003 * 109.47232 * 62.11203 * 28 26 17 44 44 H 1.08998 * 109.47328 * 182.11360 * 28 26 17 45 45 H 1.09001 * 109.49991 * 309.48771 * 29 8 7 46 46 H 1.08995 * 109.53238 * 189.40303 * 29 8 7 47 47 H 1.08991 * 109.73411 * 315.53274 * 30 5 4 48 48 H 1.09004 * 109.73120 * 76.21217 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0522 0.0000 4 7 3.5193 0.6812 0.0045 5 6 3.5817 -0.6156 0.0070 6 7 2.3076 -1.0832 0.0058 7 6 1.9367 -2.4980 0.0117 8 6 3.1537 -3.3240 0.4447 9 1 3.3570 -3.1449 1.5005 10 6 2.8680 -4.7881 0.2300 11 8 1.7994 -5.1370 -0.2253 12 7 3.7999 -5.7096 0.5441 13 6 3.5224 -7.1328 0.3349 14 1 2.4696 -7.3497 0.5157 15 6 3.9347 -7.5680 -1.0962 16 6 4.2193 -9.0788 -0.8897 17 7 4.8365 -9.1702 0.4459 18 6 5.6602 -10.1755 0.8774 19 1 6.0638 -10.1507 1.8789 20 6 5.9764 -11.2267 0.0275 21 7 5.4839 -11.2573 -1.1927 22 14 7.1005 -12.5976 0.6157 23 1 7.5163 -12.3304 2.0161 24 1 6.3764 -13.8926 0.5536 25 1 8.3021 -12.6601 -0.2546 26 6 4.4219 -8.0030 1.2378 27 1 5.2989 -7.4338 1.5463 28 6 3.6375 -8.4581 2.4701 29 6 4.3733 -2.9153 -0.3862 30 6 4.8052 -1.4970 0.0103 31 1 -0.3633 -0.0004 -1.0276 32 1 -0.3633 -0.8898 0.5143 33 1 -0.3632 0.8902 0.5135 34 1 1.6279 -2.7991 -0.9893 35 1 1.1170 -2.6604 0.7115 36 1 4.6547 -5.4305 0.9080 37 1 3.1181 -7.4142 -1.8017 38 1 4.8332 -7.0431 -1.4205 39 1 4.9080 -9.4436 -1.6517 40 1 3.2890 -9.6461 -0.9174 41 1 5.7045 -11.9920 -1.7864 42 1 2.7724 -9.0415 2.1550 43 1 4.2787 -9.0718 3.1028 44 1 3.3025 -7.5852 3.0304 45 1 4.1152 -2.9342 -1.4450 46 1 5.1916 -3.6105 -0.1988 47 1 5.5327 -1.1194 -0.7081 48 1 5.2454 -1.5118 1.0074 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089056708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:49 Heat of formation + Delta-G solvation = 60.579639 kcal Electronic energy + Delta-G solvation = -29083.403787 eV Core-core repulsion = 25175.014307 eV Total energy + Delta-G solvation = -3908.389480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.58234 -40.31609 -38.04601 -36.88010 -34.60289 -34.12463 -32.35144 -31.67940 -30.80301 -30.46100 -28.72159 -27.65090 -25.82745 -24.37151 -24.08537 -23.47420 -21.70630 -20.92193 -20.34489 -20.10033 -19.46841 -17.74976 -16.95308 -16.87267 -16.37451 -16.13023 -15.55320 -15.17627 -14.88812 -14.51352 -14.36987 -14.10480 -14.06270 -13.91882 -13.47430 -13.44128 -12.99745 -12.91631 -12.60765 -12.52419 -12.25437 -12.09917 -11.83001 -11.70005 -11.62128 -11.47562 -11.25193 -10.94926 -10.93671 -10.68890 -10.58234 -10.53805 -10.38608 -10.14856 -9.93493 -9.83910 -9.66611 -9.22239 -8.86395 -8.73840 -6.97706 -5.74862 -3.18015 1.53959 2.08765 2.41570 2.61353 3.03858 3.33150 3.38912 3.41306 3.70568 3.91392 4.07634 4.12752 4.20983 4.40293 4.56062 4.62712 4.73053 4.80403 4.90173 5.06774 5.12557 5.16661 5.22119 5.31252 5.33958 5.36336 5.41280 5.50299 5.51989 5.56924 5.67810 5.70743 5.92820 5.99244 6.09718 6.16995 6.20373 6.38565 6.45780 6.56958 6.57744 6.73875 6.95320 7.38974 7.46473 7.53506 7.75428 8.08160 8.25426 8.50165 9.11193 9.72030 10.34834 11.28583 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.028753 B = 0.002297 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.594543 B =12189.320594 C =12466.068404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.179 3.821 3 N -0.301 5.301 4 N -0.291 5.291 5 C 0.173 3.827 6 N -0.469 5.469 7 C 0.124 3.876 8 C -0.123 4.123 9 H 0.111 0.889 10 C 0.524 3.476 11 O -0.539 6.539 12 N -0.708 5.708 13 C 0.134 3.866 14 H 0.094 0.906 15 C -0.152 4.152 16 C 0.152 3.848 17 N -0.595 5.595 18 C -0.222 4.222 19 H 0.078 0.922 20 C -0.010 4.010 21 N -0.920 5.920 22 Si 0.914 3.086 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.156 3.844 27 H 0.036 0.964 28 C -0.156 4.156 29 C -0.119 4.119 30 C -0.031 4.031 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.399 0.601 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.110 0.890 40 H 0.015 0.985 41 H 0.252 0.748 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.037 0.963 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.106 0.894 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.981 17.960 3.083 19.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 N -0.142 5.142 4 N -0.131 5.131 5 C -0.095 4.095 6 N -0.160 5.160 7 C 0.001 3.999 8 C -0.145 4.145 9 H 0.129 0.871 10 C 0.308 3.692 11 O -0.416 6.416 12 N -0.358 5.358 13 C 0.030 3.970 14 H 0.112 0.888 15 C -0.192 4.192 16 C 0.027 3.973 17 N -0.320 5.320 18 C -0.350 4.350 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.745 3.255 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.048 3.952 27 H 0.053 0.947 28 C -0.216 4.216 29 C -0.158 4.158 30 C -0.071 4.071 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.234 0.766 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.127 0.873 40 H 0.033 0.967 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.100 0.900 46 H 0.114 0.886 47 H 0.124 0.876 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.243 18.917 2.679 20.100 hybrid contribution 0.467 -2.023 0.555 2.149 sum -5.775 16.894 3.234 18.145 Atomic orbital electron populations 1.20230 0.83656 1.04564 1.04196 1.24682 0.97134 0.82727 1.04312 1.74487 0.96123 1.23690 1.19918 1.74040 1.12314 1.08060 1.18644 1.24719 0.87081 0.92583 1.05093 1.46009 1.06998 1.08509 1.54474 1.21766 0.97653 0.75169 1.05315 1.21630 0.96291 0.93268 1.03342 0.87129 1.19918 0.84407 0.86739 0.78152 1.90738 1.24459 1.81808 1.44634 1.46046 1.18033 1.07112 1.64582 1.22227 1.00323 0.77599 0.96882 0.88824 1.23431 1.00139 1.00803 0.94832 1.21990 0.97471 0.88195 0.89613 1.44481 1.54938 1.22336 1.10215 1.19060 1.19770 0.98399 0.97759 0.90372 1.24800 1.00686 0.98767 0.96282 1.69799 1.48075 1.32492 1.06467 0.86007 0.79966 0.81838 0.77706 1.20525 1.21731 1.21701 1.20980 0.93789 0.89608 0.90869 0.94675 1.22249 1.00760 0.99883 0.98660 1.21757 0.96858 0.96438 1.00732 1.20232 0.91210 0.90907 1.04716 0.89476 0.90298 0.88666 0.87814 0.87890 0.76579 0.91949 0.91939 0.87267 0.96746 0.93671 0.92895 0.92626 0.94383 0.90031 0.88633 0.87589 0.88290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.29 36.01 0.37 -0.06 16 2 C 0.18 1.90 8.07 -155.44 -1.25 0.65 16 3 N -0.30 -4.18 12.23 32.70 0.40 -3.78 16 4 N -0.29 -4.05 12.21 32.75 0.40 -3.65 16 5 C 0.17 1.85 7.75 -155.31 -1.20 0.65 16 6 N -0.47 -4.59 3.11 -110.86 -0.35 -4.94 16 7 C 0.12 1.01 5.47 -4.00 -0.02 0.99 16 8 C -0.12 -0.94 2.54 -91.54 -0.23 -1.17 16 9 H 0.11 0.69 8.12 -51.93 -0.42 0.27 16 10 C 0.52 5.87 7.15 -10.99 -0.08 5.79 16 11 O -0.54 -8.04 15.51 5.55 0.09 -7.95 16 12 N -0.71 -8.23 5.02 -52.03 -0.26 -8.49 16 13 C 0.13 2.13 2.79 -66.10 -0.18 1.95 16 14 H 0.09 1.63 7.33 -51.93 -0.38 1.25 16 15 C -0.15 -2.73 6.79 -24.47 -0.17 -2.89 16 16 C 0.15 3.48 5.89 -2.42 -0.01 3.47 16 17 N -0.59 -13.89 3.13 -162.44 -0.51 -14.40 16 18 C -0.22 -5.75 9.90 -15.05 -0.15 -5.90 16 19 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 20 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -25.69 10.09 55.49 0.56 -25.13 16 22 Si 0.91 21.16 29.55 -169.99 -5.02 16.14 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 C 0.16 2.83 3.48 -66.96 -0.23 2.60 16 27 H 0.04 0.62 7.70 -51.93 -0.40 0.22 16 28 C -0.16 -2.66 9.14 37.16 0.34 -2.32 16 29 C -0.12 -0.78 5.22 -26.42 -0.14 -0.92 16 30 C -0.03 -0.21 6.34 -27.60 -0.17 -0.39 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.38 7.75 -51.93 -0.40 -0.02 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.10 0.91 7.79 -51.93 -0.40 0.51 16 35 H 0.10 0.75 7.84 -51.93 -0.41 0.34 16 36 H 0.40 3.65 7.68 -40.82 -0.31 3.34 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.11 2.83 5.87 -51.93 -0.31 2.53 16 40 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.05 0.99 8.05 -51.93 -0.42 0.57 16 44 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 46 H 0.10 0.51 7.33 -51.93 -0.38 0.12 16 47 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 381.46 15.07 5.75 5.75 Total: -1.00 -33.48 381.46 -9.78 -43.26 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -7.61 Total: 1.09 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -3.23 Total: 2.10 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: 0.24 Total: -60.38 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.09 Total: -7.95 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.48 -9.78 -43.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089056708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.842 kcal (2) G-P(sol) polarization free energy of solvation -33.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds