Wall clock time and date at job start Tue Mar 31 2020 17:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30844 * 126.46720 * 2 1 4 4 N 1.28910 * 109.74074 * 179.78626 * 3 2 1 5 5 C 1.29833 * 109.48227 * 0.02562 * 4 3 2 6 6 N 1.34695 * 126.46783 * 179.69157 * 2 1 3 7 7 C 1.46263 * 128.84379 * 0.08630 * 6 2 1 8 8 C 1.53320 * 108.72605 * 197.13315 * 7 6 2 9 9 H 1.09002 * 109.44947 * 69.73496 * 8 7 6 10 10 C 1.50702 * 109.43393 * 189.67616 * 8 7 6 11 11 O 1.21287 * 119.99928 * 0.09855 * 10 8 7 12 12 N 1.34770 * 120.00147 * 180.10038 * 10 8 7 13 13 C 1.46500 * 120.00433 * 180.02562 * 12 10 8 14 14 H 1.09003 * 110.63906 * 325.69961 * 13 12 10 15 15 C 1.55153 * 110.72084 * 88.84130 * 13 12 10 16 16 C 1.55118 * 101.48673 * 153.73719 * 15 13 12 17 17 N 1.47422 * 104.94152 * 323.22172 * 16 15 13 18 18 C 1.36939 * 125.64863 * 204.03736 * 17 16 15 19 19 H 1.08004 * 120.00140 * 179.97438 * 18 17 16 20 20 C 1.38823 * 120.00009 * 359.96157 * 18 17 16 21 21 N 1.31620 * 119.99443 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47489 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47195 * 119.99930 * 22 20 18 25 25 H 1.48501 * 109.46889 * 239.99762 * 22 20 18 26 26 C 1.47018 * 108.70422 * 24.00418 * 17 16 15 27 27 H 1.09005 * 109.88311 * 239.52511 * 26 17 16 28 28 C 1.52998 * 110.01333 * 118.43115 * 26 17 16 29 29 C 1.53134 * 109.58100 * 309.69840 * 8 7 6 30 30 C 1.50794 * 128.52487 * 179.89487 * 5 4 3 31 31 H 1.08994 * 109.47169 * 90.02382 * 1 2 3 32 32 H 1.09002 * 109.46943 * 210.02754 * 1 2 3 33 33 H 1.09002 * 109.46408 * 330.02284 * 1 2 3 34 34 H 1.09003 * 109.59422 * 77.35844 * 7 6 2 35 35 H 1.09001 * 109.71806 * 316.98069 * 7 6 2 36 36 H 0.97006 * 119.99560 * 359.97438 * 12 10 8 37 37 H 1.09006 * 111.00116 * 271.94226 * 15 13 12 38 38 H 1.09004 * 111.00550 * 35.79059 * 15 13 12 39 39 H 1.08998 * 110.42108 * 204.29307 * 16 15 13 40 40 H 1.09000 * 110.30069 * 82.08980 * 16 15 13 41 41 H 0.97004 * 119.99053 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.47053 * 302.11442 * 28 26 17 43 43 H 1.09003 * 109.47232 * 62.11203 * 28 26 17 44 44 H 1.08998 * 109.47328 * 182.11360 * 28 26 17 45 45 H 1.09001 * 109.49991 * 309.48771 * 29 8 7 46 46 H 1.08995 * 109.53238 * 189.40303 * 29 8 7 47 47 H 1.08991 * 109.73411 * 315.53274 * 30 5 4 48 48 H 1.09004 * 109.73120 * 76.21217 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0522 0.0000 4 7 3.5193 0.6812 0.0045 5 6 3.5817 -0.6156 0.0070 6 7 2.3076 -1.0832 0.0058 7 6 1.9367 -2.4980 0.0117 8 6 3.1537 -3.3240 0.4447 9 1 3.3570 -3.1449 1.5005 10 6 2.8680 -4.7881 0.2300 11 8 1.7994 -5.1370 -0.2253 12 7 3.7999 -5.7096 0.5441 13 6 3.5224 -7.1328 0.3349 14 1 2.4696 -7.3497 0.5157 15 6 3.9347 -7.5680 -1.0962 16 6 4.2193 -9.0788 -0.8897 17 7 4.8365 -9.1702 0.4459 18 6 5.6602 -10.1755 0.8774 19 1 6.0638 -10.1507 1.8789 20 6 5.9764 -11.2267 0.0275 21 7 5.4839 -11.2573 -1.1927 22 14 7.1005 -12.5976 0.6157 23 1 7.5163 -12.3304 2.0161 24 1 6.3764 -13.8926 0.5536 25 1 8.3021 -12.6601 -0.2546 26 6 4.4219 -8.0030 1.2378 27 1 5.2989 -7.4338 1.5463 28 6 3.6375 -8.4581 2.4701 29 6 4.3733 -2.9153 -0.3862 30 6 4.8052 -1.4970 0.0103 31 1 -0.3633 -0.0004 -1.0276 32 1 -0.3633 -0.8898 0.5143 33 1 -0.3632 0.8902 0.5135 34 1 1.6279 -2.7991 -0.9893 35 1 1.1170 -2.6604 0.7115 36 1 4.6547 -5.4305 0.9080 37 1 3.1181 -7.4142 -1.8017 38 1 4.8332 -7.0431 -1.4205 39 1 4.9080 -9.4436 -1.6517 40 1 3.2890 -9.6461 -0.9174 41 1 5.7045 -11.9920 -1.7864 42 1 2.7724 -9.0415 2.1550 43 1 4.2787 -9.0718 3.1028 44 1 3.3025 -7.5852 3.0304 45 1 4.1152 -2.9342 -1.4450 46 1 5.1916 -3.6105 -0.1988 47 1 5.5327 -1.1194 -0.7081 48 1 5.2454 -1.5118 1.0074 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089056708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:48 Heat of formation + Delta-G solvation = 39.752053 kcal Electronic energy + Delta-G solvation = -29084.306939 eV Core-core repulsion = 25175.014307 eV Total energy + Delta-G solvation = -3909.292632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.36235 -41.30512 -39.41268 -37.74697 -35.69833 -35.10337 -33.86616 -32.58578 -32.01149 -31.43102 -30.36398 -28.33094 -26.99321 -25.91405 -25.34740 -24.21945 -22.50368 -22.15668 -21.58682 -21.37967 -20.40589 -18.74940 -18.52911 -17.65593 -17.41163 -17.19031 -16.67506 -16.32006 -15.89991 -15.66819 -15.55500 -15.15165 -14.94417 -14.79321 -14.74008 -14.29351 -13.99160 -13.95810 -13.70610 -13.46095 -13.22552 -13.18905 -13.17146 -12.92649 -12.74927 -12.63534 -12.58744 -12.26425 -12.18624 -12.09125 -12.01899 -11.93219 -11.56134 -11.42153 -11.36625 -11.14080 -10.88148 -10.72564 -10.02413 -10.02025 -8.87881 -7.74146 -5.18412 0.80262 1.35993 1.49119 1.49976 1.53192 1.59403 1.77781 2.10194 2.52753 3.07259 3.26252 3.35697 3.39121 3.54711 3.56347 3.66425 3.87600 3.94253 3.97647 4.02374 4.14378 4.24552 4.26355 4.33742 4.53386 4.56704 4.64205 4.65121 4.67015 4.70483 4.83665 4.84793 4.86373 4.96995 4.97233 5.02769 5.05804 5.08240 5.15931 5.23774 5.38601 5.52623 5.62896 5.63369 5.83097 5.88542 6.32922 6.52520 7.13064 7.19410 7.68006 7.81236 8.43654 9.27697 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.028753 B = 0.002297 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.594543 B =12189.320594 C =12466.068404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.179 3.821 3 N -0.347 5.347 4 N -0.336 5.336 5 C 0.174 3.826 6 N -0.469 5.469 7 C 0.124 3.876 8 C -0.110 4.110 9 H 0.136 0.864 10 C 0.530 3.470 11 O -0.575 6.575 12 N -0.698 5.698 13 C 0.154 3.846 14 H 0.081 0.919 15 C -0.137 4.137 16 C 0.155 3.845 17 N -0.614 5.614 18 C -0.222 4.222 19 H 0.086 0.914 20 C -0.070 4.070 21 N -0.951 5.951 22 Si 0.974 3.026 23 H -0.264 1.264 24 H -0.299 1.299 25 H -0.294 1.294 26 C 0.150 3.850 27 H 0.056 0.944 28 C -0.148 4.148 29 C -0.114 4.114 30 C -0.027 4.027 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.416 0.584 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.075 0.925 40 H -0.018 1.018 41 H 0.245 0.755 42 H 0.033 0.967 43 H 0.044 0.956 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.116 0.884 47 H 0.114 0.886 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.545 19.118 4.812 20.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 N -0.187 5.187 4 N -0.175 5.175 5 C -0.095 4.095 6 N -0.159 5.159 7 C 0.001 3.999 8 C -0.131 4.131 9 H 0.154 0.846 10 C 0.316 3.684 11 O -0.454 6.454 12 N -0.349 5.349 13 C 0.048 3.952 14 H 0.099 0.901 15 C -0.176 4.176 16 C 0.030 3.970 17 N -0.339 5.339 18 C -0.351 4.351 19 H 0.103 0.897 20 C -0.262 4.262 21 N -0.601 5.601 22 Si 0.804 3.196 23 H -0.189 1.189 24 H -0.226 1.226 25 H -0.221 1.221 26 C 0.043 3.957 27 H 0.074 0.926 28 C -0.207 4.207 29 C -0.152 4.152 30 C -0.066 4.066 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.133 0.867 36 H 0.254 0.746 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.000 1.000 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.135 0.865 47 H 0.133 0.867 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.789 20.136 4.451 21.419 hybrid contribution 0.268 -2.351 0.023 2.367 sum -5.521 17.784 4.474 19.151 Atomic orbital electron populations 1.20425 0.81029 1.05831 1.05292 1.25376 0.98586 0.82349 1.02597 1.74389 0.96716 1.25531 1.22092 1.73936 1.12793 1.09981 1.20780 1.25398 0.88467 0.92246 1.03351 1.46111 1.06695 1.08882 1.54254 1.21842 0.98358 0.74278 1.05379 1.21553 0.96452 0.90062 1.05058 0.84605 1.20409 0.83405 0.87856 0.76724 1.90742 1.26053 1.82588 1.46043 1.45787 1.19125 1.05157 1.64812 1.21704 0.99001 0.79831 0.94641 0.90077 1.23213 1.00775 0.97128 0.96522 1.21707 0.95009 0.91241 0.89078 1.44719 1.54702 1.23298 1.11177 1.19413 1.19139 0.98761 0.97788 0.89651 1.25574 1.02704 1.01255 0.96645 1.70050 1.49716 1.32832 1.07499 0.85056 0.77911 0.78797 0.77856 1.18863 1.22644 1.22092 1.21217 0.94980 0.88370 0.91085 0.92641 1.22142 0.99565 1.00922 0.98119 1.21758 0.96886 0.96631 0.99942 1.20420 0.89809 0.90055 1.06318 0.88356 0.88362 0.88035 0.88530 0.86679 0.74572 0.91610 0.90790 0.90676 1.00008 0.94553 0.94763 0.93635 0.90796 0.90962 0.86548 0.86739 0.86061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.29 71.24 0.73 0.00 16 2 C 0.18 3.61 8.07 138.14 1.11 4.72 16 3 N -0.35 -9.58 12.23 -50.46 -0.62 -10.19 16 4 N -0.34 -9.21 12.21 -50.28 -0.61 -9.82 16 5 C 0.17 3.42 7.75 138.14 1.07 4.49 16 6 N -0.47 -8.25 3.11 -504.64 -1.57 -9.82 16 7 C 0.12 1.68 5.47 86.53 0.47 2.16 16 8 C -0.11 -1.25 2.54 -11.39 -0.03 -1.28 16 9 H 0.14 0.99 8.12 -2.39 -0.02 0.97 16 10 C 0.53 10.08 7.15 87.66 0.63 10.71 16 11 O -0.57 -15.80 15.51 -3.05 -0.05 -15.85 16 12 N -0.70 -13.60 5.02 -436.92 -2.19 -15.80 16 13 C 0.15 4.57 2.79 46.18 0.13 4.70 16 14 H 0.08 2.69 7.33 -2.39 -0.02 2.67 16 15 C -0.14 -4.76 6.79 32.06 0.22 -4.54 16 16 C 0.16 7.27 5.89 86.93 0.51 7.78 16 17 N -0.61 -28.52 3.13 -667.85 -2.09 -30.61 16 18 C -0.22 -11.45 9.90 84.04 0.83 -10.62 16 19 H 0.09 4.18 7.83 -2.91 -0.02 4.16 16 20 C -0.07 -3.76 5.49 84.86 0.47 -3.29 16 21 N -0.95 -54.82 10.09 21.66 0.22 -54.61 16 22 Si 0.97 43.84 29.55 68.60 2.03 45.87 16 23 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 24 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 26 C 0.15 5.13 3.48 45.34 0.16 5.29 16 27 H 0.06 1.72 7.70 -2.38 -0.02 1.70 16 28 C -0.15 -4.72 9.14 71.98 0.66 -4.06 16 29 C -0.11 -1.06 5.22 30.80 0.16 -0.90 16 30 C -0.03 -0.28 6.34 30.03 0.19 -0.09 16 31 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.10 0.68 7.75 -2.39 -0.02 0.67 16 33 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.10 1.50 7.79 -2.39 -0.02 1.48 16 35 H 0.12 1.31 7.84 -2.39 -0.02 1.29 16 36 H 0.42 5.56 7.68 -92.70 -0.71 4.85 16 37 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 38 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.08 4.06 5.87 -2.39 -0.01 4.04 16 40 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 41 H 0.24 13.82 8.31 -92.71 -0.77 13.05 16 42 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.04 1.52 8.05 -2.39 -0.02 1.51 16 44 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.07 0.86 8.12 -2.39 -0.02 0.84 16 46 H 0.12 0.66 7.33 -2.39 -0.02 0.64 16 47 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -76.26 381.46 2.68 -73.58 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.26 Total: 12.18 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 7.31 Total: 15.06 kcal Atomic # 7 Polarization: -123.97 SS G_CDS: -6.87 Total: -130.84 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.05 Total: -15.85 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -76.26 2.68 -73.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089056708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.331 kcal (2) G-P(sol) polarization free energy of solvation -76.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds