Wall clock time and date at job start Tue Mar 31 2020 18:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.70229 * 2 1 4 4 C 1.52764 * 109.50649 * 239.88554 * 2 1 3 5 5 C 1.53042 * 109.38108 * 185.70884 * 4 2 1 6 6 H 1.09001 * 109.46142 * 181.26077 * 5 4 2 7 7 N 1.46504 * 109.45706 * 301.21549 * 5 4 2 8 8 C 1.36933 * 119.99838 * 205.06853 * 7 5 4 9 9 H 1.07999 * 120.00382 * 0.02562 * 8 7 5 10 10 C 1.38812 * 119.99844 * 180.02562 * 8 7 5 11 11 N 1.31625 * 120.00055 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00139 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46929 * 60.00170 * 12 10 8 14 14 H 1.48503 * 109.47220 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47366 * 300.00158 * 12 10 8 16 16 C 1.53040 * 109.53871 * 61.23538 * 5 4 2 17 17 C 1.53185 * 109.31337 * 298.63565 * 16 5 4 18 18 N 1.46927 * 109.58407 * 120.35888 * 2 1 3 19 19 C 1.34768 * 120.63412 * 353.41616 * 18 2 1 20 20 O 1.21597 * 120.00025 * 353.76470 * 19 18 2 21 21 C 1.47524 * 120.00473 * 173.76576 * 19 18 2 22 22 C 1.36589 * 125.77470 * 185.99485 * 21 19 18 23 23 N 1.34812 * 106.84211 * 179.97438 * 22 21 19 24 24 C 1.46498 * 126.59764 * 179.97438 * 23 22 21 25 25 C 1.53000 * 109.47301 * 124.99938 * 24 23 22 26 26 C 1.53008 * 117.49594 * 243.61906 * 25 24 23 27 27 C 1.52998 * 59.99956 * 252.51112 * 26 25 24 28 28 N 1.40215 * 106.81047 * 0.02562 * 23 22 21 29 29 N 1.28762 * 108.36618 * 359.74734 * 28 23 22 30 30 H 1.08999 * 109.47041 * 305.72509 * 1 2 3 31 31 H 1.09001 * 109.47377 * 65.72850 * 1 2 3 32 32 H 1.09004 * 109.47261 * 185.72412 * 1 2 3 33 33 H 1.08997 * 109.56637 * 65.66427 * 4 2 1 34 34 H 1.09006 * 109.38304 * 305.62883 * 4 2 1 35 35 H 0.97004 * 119.99465 * 25.07094 * 7 5 4 36 36 H 0.96993 * 119.99963 * 180.02562 * 11 10 8 37 37 H 1.09001 * 109.49517 * 178.68308 * 16 5 4 38 38 H 1.08998 * 109.49416 * 58.59312 * 16 5 4 39 39 H 1.08992 * 109.59004 * 294.84724 * 17 16 5 40 40 H 1.09004 * 109.58525 * 174.41999 * 17 16 5 41 41 H 1.07997 * 126.58017 * 359.95610 * 22 21 19 42 42 H 1.09009 * 109.47004 * 244.99815 * 24 23 22 43 43 H 1.08998 * 109.47491 * 4.99426 * 24 23 22 44 44 H 1.08991 * 115.55160 * 29.32757 * 25 24 23 45 45 H 1.08999 * 117.49747 * 0.02562 * 26 25 24 46 46 H 1.08998 * 117.49192 * 145.01922 * 26 25 24 47 47 H 1.09003 * 117.50059 * 252.51020 * 27 26 25 48 48 H 1.08996 * 117.49906 * 107.49128 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0401 -0.7225 -1.2456 5 6 3.5638 -0.8462 -1.1727 6 1 3.9313 -1.3416 -2.0714 7 7 4.1577 0.4894 -1.0745 8 6 5.4417 0.7008 -1.5010 9 1 6.0164 -0.1170 -1.9101 10 6 6.0046 1.9662 -1.4075 11 7 5.3044 2.9628 -0.9084 12 14 7.7564 2.2544 -1.9885 13 1 7.8602 1.9214 -3.4320 14 1 8.1180 3.6800 -1.7827 15 1 8.6834 1.3912 -1.2135 16 6 3.9522 -1.6687 0.0580 17 6 3.4644 -0.9520 1.3209 18 7 2.0225 -0.6996 1.1945 19 6 1.1674 -1.1071 2.1531 20 8 -0.0072 -0.7987 2.0911 21 6 1.6562 -1.9272 3.2777 22 6 0.8803 -2.4981 4.2461 23 7 1.7135 -3.1573 5.0759 24 6 1.3353 -3.9236 6.2659 25 6 1.8885 -5.3457 6.1539 26 6 0.8786 -6.4930 6.0840 27 6 1.7003 -6.2736 7.3558 28 7 3.0120 -2.9676 4.5818 29 7 2.9401 -2.2429 3.5199 30 1 -0.3633 0.6000 0.8343 31 1 -0.3634 0.4224 -0.9368 32 1 -0.3634 -1.0226 0.1025 33 1 1.7631 -0.1565 -2.1350 34 1 1.5963 -1.7169 -1.2943 35 1 3.6414 1.2240 -0.7074 36 1 5.6977 3.8470 -0.8434 37 1 5.0362 -1.7762 0.0964 38 1 3.4904 -2.6542 -0.0025 39 1 3.9928 -0.0051 1.4309 40 1 3.6503 -1.5799 2.1923 41 1 -0.1944 -2.4337 4.3308 42 1 1.7464 -3.4427 7.1535 43 1 0.2487 -3.9614 6.3435 44 1 2.8081 -5.4484 5.5779 45 1 -0.1798 -6.2346 6.1173 46 1 1.1338 -7.3507 5.4617 47 1 2.4960 -6.9870 7.5703 48 1 1.1825 -5.8709 8.2263 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044804792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:33 Heat of formation + Delta-G solvation = 131.465118 kcal Electronic energy + Delta-G solvation = -29284.606748 eV Core-core repulsion = 25379.291094 eV Total energy + Delta-G solvation = -3905.315655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.34422 -39.93570 -38.21147 -37.28180 -34.56511 -33.97882 -32.50795 -31.79773 -30.75335 -28.95788 -28.22006 -26.88713 -24.36225 -23.56774 -23.12858 -23.02423 -22.85279 -21.44393 -21.20951 -19.86722 -18.58847 -17.47669 -17.10355 -16.49517 -16.17492 -15.91452 -15.43985 -15.20027 -14.70401 -14.69171 -14.19109 -14.10283 -13.84539 -13.73420 -13.57391 -13.10042 -12.95302 -12.58276 -12.45626 -12.14610 -12.09686 -11.90748 -11.81447 -11.73874 -11.18472 -11.11010 -10.89493 -10.79958 -10.77274 -10.69277 -10.44453 -10.41124 -10.19241 -9.88117 -9.67457 -9.53671 -9.31822 -8.93277 -8.76997 -8.00821 -6.88195 -5.70101 -2.98197 1.03946 1.74296 1.80983 3.14383 3.29068 3.48556 3.48787 3.53136 3.53814 3.79228 4.15229 4.18464 4.34796 4.40120 4.61928 4.65383 4.69737 4.82322 4.88445 5.07439 5.21588 5.30078 5.32512 5.41473 5.52846 5.54571 5.57520 5.59447 5.73964 5.75516 5.95885 5.98343 6.10209 6.14740 6.19557 6.29789 6.40179 6.55617 6.63733 6.70782 6.78631 6.86500 6.92990 7.04620 7.24442 7.76343 7.79762 7.97800 8.47755 8.48675 9.59726 10.17661 10.52722 11.52555 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015822 B = 0.002826 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.227387 B = 9904.535996 C =10922.364069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.144 3.856 3 H 0.082 0.918 4 C -0.132 4.132 5 C 0.172 3.828 6 H 0.048 0.952 7 N -0.721 5.721 8 C -0.235 4.235 9 H 0.069 0.931 10 C -0.014 4.014 11 N -0.934 5.934 12 Si 0.905 3.095 13 H -0.287 1.287 14 H -0.292 1.292 15 H -0.287 1.287 16 C -0.144 4.144 17 C 0.075 3.925 18 N -0.577 5.577 19 C 0.596 3.404 20 O -0.547 6.547 21 C -0.088 4.088 22 C 0.088 3.912 23 N -0.359 5.359 24 C 0.155 3.845 25 C -0.176 4.176 26 C -0.176 4.176 27 C -0.165 4.165 28 N -0.067 5.067 29 N -0.198 5.198 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.079 0.921 40 H 0.132 0.868 41 H 0.203 0.797 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.121 0.879 45 H 0.098 0.902 46 H 0.099 0.901 47 H 0.101 0.899 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.749 -17.567 15.778 26.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.042 3.958 3 H 0.100 0.900 4 C -0.171 4.171 5 C 0.061 3.939 6 H 0.066 0.934 7 N -0.363 5.363 8 C -0.367 4.367 9 H 0.087 0.913 10 C -0.209 4.209 11 N -0.582 5.582 12 Si 0.736 3.264 13 H -0.214 1.214 14 H -0.218 1.218 15 H -0.213 1.213 16 C -0.185 4.185 17 C -0.048 4.048 18 N -0.307 5.307 19 C 0.382 3.618 20 O -0.426 6.426 21 C -0.227 4.227 22 C -0.069 4.069 23 N -0.144 5.144 24 C 0.034 3.966 25 C -0.195 4.195 26 C -0.213 4.213 27 C -0.203 4.203 28 N -0.046 5.046 29 N -0.070 5.070 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.218 0.782 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.148 0.852 41 H 0.219 0.781 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.139 0.861 45 H 0.117 0.883 46 H 0.117 0.883 47 H 0.120 0.880 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.709 -17.713 15.910 26.533 hybrid contribution 0.023 0.584 -0.267 0.643 sum -11.686 -17.129 15.643 25.974 Atomic orbital electron populations 1.22202 0.93326 1.02959 1.00820 1.21202 0.94757 0.96223 0.83637 0.90044 1.22160 0.97593 1.00150 0.97207 1.20232 0.90292 0.88164 0.95174 0.93356 1.42482 1.13782 1.04876 1.75203 1.19192 0.89901 0.94162 1.33412 0.91302 1.24710 0.98191 0.95963 1.02084 1.69646 1.36581 1.00659 1.51337 0.86299 0.84943 0.76744 0.78383 1.21426 1.21842 1.21342 1.22439 1.01257 0.97659 0.97113 1.22814 0.77789 1.03055 1.01162 1.48017 1.08469 1.54973 1.19227 1.16859 0.85215 0.79052 0.80674 1.90812 1.16756 1.58235 1.76841 1.21724 0.89259 1.09606 1.02154 1.23289 0.98906 0.94263 0.90398 1.50425 1.06954 1.35874 1.21160 1.21569 1.01017 0.89699 0.84343 1.22551 1.02434 0.89776 1.04706 1.23142 0.97088 1.00048 1.01040 1.22991 1.03260 1.01960 0.92065 1.82026 0.97870 1.17514 1.07195 1.74303 1.17853 1.07719 1.07113 0.90592 0.93885 0.92215 0.90732 0.92233 0.78178 0.93551 0.91021 0.93761 0.90309 0.85197 0.78061 0.87930 0.87701 0.86072 0.88332 0.88300 0.88033 0.88230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 7.60 37.16 0.28 -1.91 16 2 C 0.14 2.58 3.18 -67.82 -0.22 2.36 16 3 H 0.08 1.64 6.64 -51.93 -0.34 1.30 16 4 C -0.13 -2.32 5.05 -26.83 -0.14 -2.45 16 5 C 0.17 3.46 3.10 -67.89 -0.21 3.25 16 6 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 7 N -0.72 -17.80 4.31 -53.38 -0.23 -18.03 16 8 C -0.24 -6.48 9.93 -15.06 -0.15 -6.62 16 9 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 10 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 11 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 12 Si 0.90 22.59 29.55 -169.99 -5.02 17.56 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 15 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 16 C -0.14 -2.68 5.78 -26.61 -0.15 -2.84 16 17 C 0.07 1.39 6.08 -3.71 -0.02 1.37 16 18 N -0.58 -10.27 2.98 -166.70 -0.50 -10.76 16 19 C 0.60 10.01 7.49 -12.48 -0.09 9.92 16 20 O -0.55 -9.53 12.45 5.28 0.07 -9.47 16 21 C -0.09 -1.29 6.78 -83.55 -0.57 -1.86 16 22 C 0.09 0.93 11.28 -16.84 -0.19 0.74 16 23 N -0.36 -3.52 3.69 -61.06 -0.23 -3.74 16 24 C 0.15 0.85 6.82 -4.04 -0.03 0.82 16 25 C -0.18 -1.03 5.94 -90.61 -0.54 -1.56 16 26 C -0.18 -0.82 10.18 -26.73 -0.27 -1.09 16 27 C -0.17 -0.67 10.25 -26.73 -0.27 -0.95 16 28 N -0.07 -0.91 13.48 60.35 0.81 -0.09 16 29 N -0.20 -3.06 8.64 32.85 0.28 -2.78 16 30 H 0.08 1.30 6.55 -51.93 -0.34 0.96 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.97 6.95 -51.93 -0.36 0.61 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.38 10.09 6.07 -40.82 -0.25 9.84 16 36 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.72 7.74 -51.93 -0.40 1.32 16 40 H 0.13 2.33 3.58 -132.17 -0.47 1.85 16 41 H 0.20 1.45 8.06 -52.49 -0.42 1.03 16 42 H 0.10 0.45 8.14 -51.92 -0.42 0.03 16 43 H 0.10 0.29 7.82 -51.93 -0.41 -0.12 16 44 H 0.12 0.97 7.94 -51.93 -0.41 0.56 16 45 H 0.10 0.35 8.03 -51.93 -0.42 -0.07 16 46 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 381.29 15.07 5.75 5.75 Total: -1.00 -32.77 381.29 -8.60 -41.37 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -7.60 Total: 9.01 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -2.66 Total: -1.30 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: 0.87 Total: -62.92 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.07 Total: -9.47 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.77 -8.60 -41.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044804792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.836 kcal (2) G-P(sol) polarization free energy of solvation -32.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds