Wall clock time and date at job start Tue Mar 31 2020 19:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00132 * 2 1 4 4 C 1.50695 * 119.99908 * 179.97438 * 2 1 3 5 5 N 1.46501 * 109.47427 * 94.34742 * 4 2 1 6 6 C 1.36743 * 127.13464 * 95.20893 * 5 4 2 7 7 C 1.50701 * 126.34576 * 0.06013 * 6 5 4 8 8 H 1.08993 * 109.47237 * 359.97438 * 7 6 5 9 9 C 1.53008 * 109.46916 * 239.99991 * 7 6 5 10 10 C 1.52999 * 109.46813 * 120.00312 * 7 6 5 11 11 C 1.50704 * 109.46695 * 184.99426 * 10 7 6 12 12 H 1.08002 * 120.00245 * 0.02562 * 11 10 7 13 13 C 1.37876 * 119.99903 * 179.97438 * 11 10 7 14 14 N 1.31518 * 120.00044 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00095 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47252 * 60.00237 * 15 13 11 17 17 H 1.48499 * 109.46799 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47010 * 300.00101 * 15 13 11 19 19 N 1.30295 * 107.30171 * 180.02562 * 6 5 4 20 20 N 1.28525 * 110.05364 * 359.72585 * 19 6 5 21 21 C 1.31214 * 109.86076 * 0.45301 * 20 19 6 22 22 N 1.38578 * 126.47212 * 179.82336 * 21 20 19 23 23 C 1.46914 * 110.99535 * 350.52895 * 22 21 20 24 24 C 1.52983 * 108.87966 * 54.32145 * 23 22 21 25 25 N 1.46010 * 109.94683 * 50.31254 * 24 23 22 26 26 C 1.33711 * 122.92967 * 341.87890 * 25 24 23 27 27 O 1.21277 * 118.62684 * 181.70618 * 26 25 24 28 28 C 1.46898 * 111.00421 * 113.37127 * 22 21 20 29 29 H 1.08004 * 119.99836 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00368 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47270 * 174.90970 * 3 2 1 32 32 H 1.08996 * 109.47058 * 294.91130 * 3 2 1 33 33 H 1.09006 * 109.47382 * 54.91211 * 3 2 1 34 34 H 1.09004 * 109.47493 * 334.34666 * 4 2 1 35 35 H 1.09005 * 109.47091 * 214.34946 * 4 2 1 36 36 H 1.09000 * 109.46852 * 180.02562 * 9 7 6 37 37 H 1.09002 * 109.46938 * 300.00080 * 9 7 6 38 38 H 1.09002 * 109.47010 * 60.00265 * 9 7 6 39 39 H 1.09001 * 109.47147 * 304.99409 * 10 7 6 40 40 H 1.08996 * 109.47087 * 64.99921 * 10 7 6 41 41 H 0.97001 * 120.00090 * 179.97438 * 14 13 11 42 42 H 1.09003 * 109.45434 * 294.54178 * 23 22 21 43 43 H 1.09006 * 109.58626 * 174.18077 * 23 22 21 44 44 H 1.08999 * 109.37041 * 290.19800 * 24 23 22 45 45 H 1.09003 * 109.37355 * 170.43339 * 24 23 22 46 46 H 0.96999 * 118.53007 * 161.89446 * 25 24 23 47 47 H 1.08998 * 109.38863 * 166.77224 * 28 22 21 48 48 H 1.09006 * 109.38242 * 47.08522 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 0.0006 5 7 2.3983 -1.6763 -1.3765 6 6 3.5690 -1.4263 -2.0374 7 6 4.7730 -0.7102 -1.4818 8 1 4.5749 -0.4111 -0.4526 9 6 5.0622 0.5323 -2.3267 10 6 5.9838 -1.6447 -1.5180 11 6 7.1567 -0.9732 -0.8512 12 1 7.0490 0.0205 -0.4421 13 6 8.3668 -1.6279 -0.7624 14 7 8.4977 -2.8383 -1.2600 15 14 9.8204 -0.7959 0.0648 16 1 9.4761 -0.4856 1.4756 17 1 10.9957 -1.7030 0.0296 18 1 10.1452 0.4624 -0.6538 19 7 3.4507 -1.9226 -3.2363 20 7 2.2962 -2.4700 -3.3748 21 6 1.6066 -2.3428 -2.2657 22 7 0.3196 -2.8036 -2.0385 23 6 -0.2973 -3.2782 -3.2845 24 6 0.6206 -4.3208 -3.9255 25 7 0.9941 -5.3298 -2.9383 26 6 0.8768 -5.1358 -1.6206 27 8 1.2400 -6.0157 -0.8692 28 6 0.3135 -3.8734 -1.0318 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5400 -0.9352 0.0004 31 1 3.1317 1.1079 0.0912 32 1 1.8703 1.8361 -0.9320 33 1 1.7336 1.9152 0.8409 34 1 1.4429 -2.0828 0.4458 35 1 2.9799 -1.1952 0.5804 36 1 5.9333 1.0500 -1.9252 37 1 5.2601 0.2335 -3.3562 38 1 4.1995 1.1981 -2.3010 39 1 5.7458 -2.5684 -0.9904 40 1 6.2362 -1.8725 -2.5536 41 1 9.3492 -3.2987 -1.1979 42 1 -0.4293 -2.4386 -3.9670 43 1 -1.2650 -3.7290 -3.0645 44 1 1.5194 -3.8303 -4.2991 45 1 0.0995 -4.8008 -4.7539 46 1 1.3430 -6.1785 -3.2526 47 1 -0.7095 -4.0534 -0.7012 48 1 0.9199 -3.5703 -0.1781 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356618607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:49 Heat of formation + Delta-G solvation = 81.671394 kcal Electronic energy + Delta-G solvation = -30517.846145 eV Core-core repulsion = 26610.371273 eV Total energy + Delta-G solvation = -3907.474872 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.93003 -40.53922 -37.62454 -36.97968 -35.26012 -34.47138 -33.22207 -32.20169 -30.21037 -29.10147 -27.70121 -27.13265 -26.92240 -26.02912 -24.15627 -23.87029 -22.02858 -21.47469 -19.89508 -19.30012 -18.70518 -17.75564 -16.96837 -16.75749 -16.22545 -16.15781 -15.81093 -15.42596 -14.91957 -14.70661 -14.59998 -14.48336 -13.88964 -13.87623 -13.37605 -13.29693 -13.17731 -12.83605 -12.59543 -12.39803 -12.10854 -12.00238 -11.80652 -11.75112 -11.52567 -11.25628 -11.03544 -10.97255 -10.92857 -10.73670 -10.50530 -10.20664 -9.97858 -9.92259 -9.67240 -9.36409 -9.29221 -9.15010 -8.92424 -8.37454 -8.10231 -6.01019 -4.05247 1.72184 1.94842 2.40701 2.55155 3.06808 3.16601 3.31852 3.37505 3.38421 3.63503 4.21661 4.35829 4.42700 4.48790 4.52318 4.65844 4.74953 4.89195 5.01877 5.02892 5.08927 5.27270 5.34535 5.37826 5.41607 5.42199 5.54972 5.57704 5.71068 5.84071 5.92375 5.99744 6.02186 6.10287 6.21539 6.29508 6.34831 6.59567 6.63827 6.67401 6.76252 6.86728 7.01532 7.13258 7.27202 7.60328 7.75767 7.97018 8.00398 8.32915 8.99914 9.08885 9.58554 11.09940 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012097 B = 0.004029 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.120346 B = 6947.443469 C = 8068.148454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.147 4.147 3 C -0.121 4.121 4 C 0.140 3.860 5 N -0.469 5.469 6 C 0.226 3.774 7 C -0.002 4.002 8 H 0.072 0.928 9 C -0.125 4.125 10 C 0.039 3.961 11 C -0.522 4.522 12 H 0.058 0.942 13 C 0.060 3.940 14 N -0.890 5.890 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.276 1.276 19 N -0.286 5.286 20 N -0.313 5.313 21 C 0.323 3.677 22 N -0.438 5.438 23 C 0.057 3.943 24 C 0.047 3.953 25 N -0.711 5.711 26 C 0.489 3.511 27 O -0.551 6.551 28 C 0.035 3.965 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.032 0.968 39 H 0.013 0.987 40 H 0.032 0.968 41 H 0.262 0.738 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.132 0.868 45 H 0.079 0.921 46 H 0.402 0.598 47 H 0.127 0.873 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.800 3.716 -0.309 22.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.148 4.148 3 C -0.177 4.177 4 C 0.018 3.982 5 N -0.163 5.163 6 C -0.041 4.041 7 C -0.023 4.023 8 H 0.090 0.910 9 C -0.183 4.183 10 C 0.001 3.999 11 C -0.560 4.560 12 H 0.076 0.924 13 C -0.142 4.142 14 N -0.528 5.528 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.201 1.201 19 N -0.123 5.123 20 N -0.157 5.157 21 C -0.033 4.033 22 N -0.162 5.162 23 C -0.071 4.071 24 C -0.079 4.079 25 N -0.363 5.363 26 C 0.273 3.727 27 O -0.429 6.429 28 C -0.096 4.096 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.126 0.874 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.031 0.969 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.125 0.875 43 H 0.112 0.888 44 H 0.149 0.851 45 H 0.097 0.903 46 H 0.238 0.762 47 H 0.145 0.855 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -21.507 3.330 -1.095 21.791 hybrid contribution 0.865 -0.309 1.352 1.634 sum -20.642 3.021 0.256 20.863 Atomic orbital electron populations 1.23794 0.94971 1.02341 0.98270 1.21799 0.95589 0.95129 1.02327 1.20886 1.00782 0.94040 1.02031 1.20975 1.01905 0.95298 0.80029 1.46304 1.13284 1.43771 1.12936 1.25609 0.88321 1.00652 0.89538 1.20029 0.88992 0.95901 0.97397 0.90969 1.21677 1.00524 0.95518 1.00588 1.19105 0.89126 0.93074 0.98636 1.21078 0.95236 1.01823 1.37882 0.92376 1.24997 0.98780 0.94829 0.95556 1.69972 1.25311 1.12301 1.45248 0.86670 0.82099 0.79359 0.79944 1.20281 1.21320 1.20131 1.74019 1.10280 1.12949 1.15044 1.74269 1.00783 1.20699 1.19966 1.22342 0.90572 1.01187 0.89180 1.59268 1.11721 1.33451 1.11731 1.22437 0.96800 0.98535 0.89302 1.22892 1.03397 0.90207 0.91378 1.45493 1.65418 1.19612 1.05773 1.20818 0.78917 0.90025 0.82948 1.90785 1.49510 1.44498 1.58078 1.22692 1.04905 0.86267 0.95708 0.88067 0.87799 0.91159 0.91531 0.91336 0.88748 0.87386 0.90650 0.92084 0.94853 0.96906 0.95002 0.92837 0.87507 0.88839 0.85052 0.90267 0.76218 0.85524 0.87071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 13.93 29.01 0.40 -0.97 16 2 C -0.15 -1.55 5.63 -101.07 -0.57 -2.12 16 3 C -0.12 -1.23 10.05 36.00 0.36 -0.87 16 4 C 0.14 1.71 5.88 -5.20 -0.03 1.68 16 5 N -0.47 -7.31 2.78 -115.37 -0.32 -7.63 16 6 C 0.23 4.29 6.58 -154.01 -1.01 3.28 16 7 C 0.00 -0.04 2.70 -91.77 -0.25 -0.29 16 8 H 0.07 1.31 5.94 -51.93 -0.31 1.00 16 9 C -0.12 -2.27 8.99 37.16 0.33 -1.94 16 10 C 0.04 0.98 4.43 -27.88 -0.12 0.86 16 11 C -0.52 -14.00 8.41 -34.44 -0.29 -14.29 16 12 H 0.06 1.46 7.06 -52.49 -0.37 1.09 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 15 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 N -0.29 -5.88 12.18 32.99 0.40 -5.48 16 20 N -0.31 -5.51 8.34 30.31 0.25 -5.26 16 21 C 0.32 4.85 6.30 -318.89 -2.01 2.83 16 22 N -0.44 -4.81 5.07 -176.13 -0.89 -5.70 16 23 C 0.06 0.50 5.84 -3.82 -0.02 0.47 16 24 C 0.05 0.48 6.56 -4.31 -0.03 0.45 16 25 N -0.71 -8.70 5.51 -61.06 -0.34 -9.04 16 26 C 0.49 6.91 7.39 -11.67 -0.09 6.82 16 27 O -0.55 -10.06 17.82 5.56 0.10 -9.96 16 28 C 0.03 0.37 5.71 -5.19 -0.03 0.34 16 29 H 0.10 0.78 8.05 -52.48 -0.42 0.35 16 30 H 0.10 0.84 8.00 -52.49 -0.42 0.43 16 31 H 0.07 0.80 7.08 -51.93 -0.37 0.43 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.98 5.48 -51.93 -0.28 0.70 16 35 H 0.11 1.35 6.96 -51.93 -0.36 0.99 16 36 H 0.07 1.39 6.95 -51.93 -0.36 1.03 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.09 0.57 8.07 -51.93 -0.42 0.15 16 44 H 0.13 1.78 5.03 -51.95 -0.26 1.52 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.40 4.73 8.84 -40.82 -0.36 4.37 16 47 H 0.13 0.95 8.14 -51.93 -0.42 0.52 16 48 H 0.11 1.27 5.39 -51.93 -0.28 0.99 16 LS Contribution 384.15 15.07 5.79 5.79 Total: -1.00 -34.82 384.15 -9.90 -44.72 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -7.16 Total: 4.56 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -3.45 Total: -2.14 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: -0.16 Total: -59.09 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.10 Total: -9.96 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.82 -9.90 -44.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356618607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.390 kcal (2) G-P(sol) polarization free energy of solvation -34.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds