Wall clock time and date at job start Tue Mar 31 2020 17:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47125 * 2 1 4 4 C 1.50694 * 109.47351 * 120.00391 * 2 1 3 5 5 O 1.21282 * 120.00330 * 93.66553 * 4 2 1 6 6 N 1.34777 * 120.00024 * 273.67028 * 4 2 1 7 7 C 1.46499 * 119.99790 * 359.97438 * 6 4 2 8 8 C 1.46504 * 120.00227 * 180.02562 * 6 4 2 9 9 C 1.50692 * 109.47466 * 89.99188 * 8 6 4 10 10 H 1.08003 * 120.00139 * 0.02562 * 9 8 6 11 11 C 1.37873 * 120.00172 * 179.97438 * 9 8 6 12 12 N 1.31518 * 119.99830 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 120.00262 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47016 * 90.00204 * 13 11 9 15 15 H 1.48496 * 109.47164 * 209.99949 * 13 11 9 16 16 H 1.48500 * 109.47074 * 330.00120 * 13 11 9 17 17 N 1.46903 * 109.46633 * 240.00105 * 2 1 3 18 18 C 1.46959 * 110.99677 * 186.77860 * 17 2 1 19 19 C 1.53049 * 109.36486 * 183.18571 * 18 17 2 20 20 N 1.46956 * 109.36912 * 301.60614 * 19 18 17 21 21 C 1.38997 * 111.00237 * 183.18465 * 20 19 18 22 22 C 1.39337 * 120.09595 * 180.02562 * 21 20 19 23 23 N 1.31917 * 119.89094 * 180.02562 * 22 21 20 24 24 C 1.32274 * 120.08514 * 359.97438 * 23 22 21 25 25 C 1.38157 * 120.19621 * 0.27282 * 24 23 22 26 26 N 1.32250 * 120.10509 * 359.43858 * 25 24 23 27 27 C 1.46955 * 110.87848 * 59.31527 * 20 19 18 28 28 C 1.46949 * 111.00167 * 310.58230 * 17 2 1 29 29 H 1.09003 * 109.47188 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46326 * 299.99536 * 1 2 3 31 31 H 1.08993 * 109.47104 * 59.99516 * 1 2 3 32 32 H 1.09000 * 109.46909 * 90.00943 * 7 6 4 33 33 H 1.08997 * 109.47307 * 210.00344 * 7 6 4 34 34 H 1.08993 * 109.47454 * 330.00391 * 7 6 4 35 35 H 1.09002 * 109.46954 * 209.99514 * 8 6 4 36 36 H 1.09001 * 109.46584 * 329.99165 * 8 6 4 37 37 H 0.97002 * 119.99752 * 179.97438 * 12 11 9 38 38 H 1.09005 * 109.48539 * 63.22881 * 18 17 2 39 39 H 1.08995 * 109.51147 * 303.17105 * 18 17 2 40 40 H 1.08994 * 109.49485 * 181.63391 * 19 18 17 41 41 H 1.09004 * 109.50146 * 61.58084 * 19 18 17 42 42 H 1.07998 * 120.05332 * 0.03673 * 22 21 20 43 43 H 1.08007 * 119.90187 * 180.02562 * 24 23 22 44 44 H 1.08000 * 119.94501 * 179.70850 * 25 24 23 45 45 H 1.08999 * 109.49139 * 60.65236 * 27 20 19 46 46 H 1.09005 * 109.48584 * 180.71351 * 27 20 19 47 47 H 1.09008 * 109.49028 * 296.77890 * 28 17 2 48 48 H 1.09000 * 109.49434 * 56.82458 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.2979 -1.8929 1.1820 6 7 2.1866 -0.0319 2.3846 7 6 1.8664 1.3965 2.4429 8 6 2.6756 -0.7224 3.5806 9 6 4.1797 -0.6438 3.6265 10 1 4.7178 -0.1303 2.8434 11 6 4.8691 -1.2263 4.6688 12 7 4.2138 -1.8511 5.6228 13 14 6.7337 -1.1281 4.7262 14 1 7.1425 0.0930 5.4656 15 1 7.2715 -2.3280 5.4162 16 1 7.2691 -1.0714 3.3422 17 7 2.0196 -0.6925 -1.1995 18 6 3.4796 -0.8540 -1.1553 19 6 3.9576 -1.5063 -2.4547 20 7 3.2917 -2.8057 -2.6214 21 6 3.7550 -3.4609 -3.7564 22 6 3.2480 -4.7136 -4.0958 23 7 3.6909 -5.3320 -5.1736 24 6 4.6144 -4.7642 -5.9315 25 6 5.1232 -3.5245 -5.5955 26 7 4.6806 -2.8951 -4.5198 27 6 1.8317 -2.6441 -2.6656 28 6 1.3537 -1.9918 -1.3662 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 0.8200 1.5231 2.7205 33 1 2.5004 1.8809 3.1855 34 1 2.0405 1.8481 1.4664 35 1 2.2596 -0.2482 4.4695 36 1 2.3672 -1.7674 3.5483 37 1 4.6988 -2.2612 6.3559 38 1 3.7500 -1.4868 -0.3099 39 1 3.9507 0.1226 -1.0439 40 1 5.0368 -1.6536 -2.4122 41 1 3.7117 -0.8608 -3.2979 42 1 2.4936 -5.1774 -3.4776 43 1 4.9746 -5.2730 -6.8135 44 1 5.8805 -3.0667 -6.2146 45 1 1.5613 -2.0114 -3.5110 46 1 1.3610 -3.6209 -2.7768 47 1 1.6000 -2.6375 -0.5232 48 1 0.2745 -1.8447 -1.4084 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042633128.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:10 Heat of formation + Delta-G solvation = 55.734809 kcal Electronic energy + Delta-G solvation = -29699.662590 eV Core-core repulsion = 25791.063023 eV Total energy + Delta-G solvation = -3908.599567 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.44314 -40.17703 -38.35059 -35.90929 -34.77650 -34.12115 -32.74142 -31.88232 -30.93345 -29.86058 -27.84361 -26.55005 -25.88646 -25.10155 -24.17854 -23.08830 -22.91943 -21.55605 -20.03545 -18.42178 -17.72868 -17.61185 -16.86572 -16.69544 -16.45012 -15.95224 -15.37779 -14.97491 -14.84907 -14.73164 -14.54082 -14.33718 -14.13992 -13.97738 -13.46215 -13.13333 -13.07649 -12.50859 -12.29228 -12.22242 -12.10384 -11.82625 -11.77790 -11.63263 -11.51326 -11.35021 -11.23104 -10.96479 -10.91201 -10.82925 -10.65214 -10.54499 -10.19097 -10.14541 -9.64808 -9.55274 -9.25534 -8.46402 -8.34447 -7.80160 -7.68338 -6.07257 -4.12197 0.65936 1.00209 3.21196 3.27679 3.30046 3.35364 3.40187 3.57693 3.91570 3.94745 4.10949 4.15605 4.40090 4.42359 4.79881 4.90463 4.95834 4.99805 5.05132 5.17181 5.22968 5.25189 5.27616 5.33005 5.38549 5.53154 5.54665 5.60132 5.68408 5.80095 5.84657 5.88983 5.94174 6.07329 6.08721 6.20724 6.27978 6.39594 6.49673 6.82833 6.96200 7.07430 7.11528 7.23408 7.40159 7.49674 7.66580 7.88600 8.19878 8.36069 8.85861 9.02977 9.53155 11.00795 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012140 B = 0.003357 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.845579 B = 8338.857520 C = 9817.222136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.057 3.943 3 H 0.102 0.898 4 C 0.479 3.521 5 O -0.537 6.537 6 N -0.598 5.598 7 C 0.080 3.920 8 C 0.245 3.755 9 C -0.525 4.525 10 H 0.056 0.944 11 C 0.062 3.938 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.513 5.513 18 C 0.035 3.965 19 C 0.077 3.923 20 N -0.466 5.466 21 C 0.276 3.724 22 C 0.038 3.962 23 N -0.419 5.419 24 C 0.002 3.998 25 C 0.081 3.919 26 N -0.480 5.480 27 C 0.067 3.933 28 C 0.030 3.970 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.056 0.944 42 H 0.170 0.830 43 H 0.166 0.834 44 H 0.167 0.833 45 H 0.051 0.949 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.866 2.649 -20.097 21.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.055 4.055 3 H 0.120 0.880 4 C 0.264 3.736 5 O -0.415 6.415 6 N -0.330 5.330 7 C -0.064 4.064 8 C 0.125 3.875 9 C -0.564 4.564 10 H 0.074 0.926 11 C -0.140 4.140 12 N -0.533 5.533 13 Si 0.725 3.275 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.199 1.199 17 N -0.237 5.237 18 C -0.093 4.093 19 C -0.050 4.050 20 N -0.182 5.182 21 C 0.040 3.960 22 C -0.128 4.128 23 N -0.133 5.133 24 C -0.157 4.157 25 C -0.079 4.079 26 N -0.201 5.201 27 C -0.058 4.058 28 C -0.098 4.098 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.187 0.813 43 H 0.183 0.817 44 H 0.184 0.816 45 H 0.069 0.931 46 H 0.105 0.895 47 H 0.108 0.892 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.736 1.973 -19.874 20.779 hybrid contribution 1.376 0.099 0.382 1.432 sum -4.359 2.072 -19.492 20.080 Atomic orbital electron populations 1.21810 0.92442 1.02955 1.02625 1.21939 0.97026 0.99054 0.87433 0.88019 1.21424 0.79112 0.87973 0.85071 1.90607 1.51477 1.15667 1.83755 1.48305 1.63238 1.09268 1.12183 1.21712 0.99955 0.82708 1.01996 1.19282 0.94230 0.93562 0.80412 1.21390 0.91600 1.35482 1.07949 0.92587 1.24930 0.98705 0.94956 0.95451 1.69931 1.35740 1.35972 1.11690 0.86514 0.85302 0.77536 0.78192 1.20618 1.21060 1.19890 1.62755 1.05553 1.20718 1.34659 1.22448 0.87698 1.01079 0.98063 1.22037 0.99058 0.86459 0.97397 1.59170 1.07279 1.22625 1.29169 1.21001 0.93026 0.93434 0.88541 1.23298 1.01633 0.92263 0.95602 1.68338 1.08615 1.33106 1.03255 1.23496 0.96157 0.95200 1.00850 1.23577 0.97886 0.93215 0.93261 1.68434 1.12711 1.34327 1.04629 1.22374 0.83559 1.00993 0.98902 1.22581 0.98610 0.91074 0.97510 0.91735 0.91605 0.91080 0.93598 0.90766 0.92268 0.95139 0.93930 0.92703 0.90573 0.90222 0.89414 0.92569 0.81320 0.81687 0.81557 0.93081 0.89539 0.89174 0.89686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.57 37.16 0.32 -1.30 16 2 C 0.06 0.82 2.32 -68.86 -0.16 0.66 16 3 H 0.10 1.32 6.00 -51.93 -0.31 1.01 16 4 C 0.48 9.34 5.89 -10.99 -0.06 9.27 16 5 O -0.54 -12.58 11.88 5.56 0.07 -12.51 16 6 N -0.60 -12.21 2.86 -182.96 -0.52 -12.73 16 7 C 0.08 1.22 10.08 59.85 0.60 1.82 16 8 C 0.24 6.30 5.16 -5.20 -0.03 6.27 16 9 C -0.53 -14.76 9.39 -34.45 -0.32 -15.08 16 10 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 13 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 17 N -0.51 -7.28 4.79 -227.88 -1.09 -8.37 16 18 C 0.04 0.55 5.10 -3.77 -0.02 0.53 16 19 C 0.08 1.10 4.80 -3.77 -0.02 1.08 16 20 N -0.47 -6.52 4.74 -172.90 -0.82 -7.33 16 21 C 0.28 3.64 6.40 -154.73 -0.99 2.65 16 22 C 0.04 0.46 10.37 -17.11 -0.18 0.28 16 23 N -0.42 -4.98 10.49 -12.88 -0.14 -5.12 16 24 C 0.00 0.02 11.21 -17.39 -0.19 -0.18 16 25 C 0.08 0.79 11.21 -17.40 -0.20 0.59 16 26 N -0.48 -6.14 8.89 -12.24 -0.11 -6.24 16 27 C 0.07 0.81 5.37 -3.77 -0.02 0.79 16 28 C 0.03 0.41 4.74 -3.77 -0.02 0.39 16 29 H 0.06 0.78 6.25 -51.93 -0.32 0.45 16 30 H 0.06 0.72 7.95 -51.93 -0.41 0.30 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 34 H 0.06 0.73 5.83 -51.93 -0.30 0.43 16 35 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.08 1.53 5.91 -51.93 -0.31 1.23 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.09 1.30 7.84 -51.93 -0.41 0.90 16 41 H 0.06 0.77 8.06 -51.93 -0.42 0.35 16 42 H 0.17 1.75 7.18 -52.49 -0.38 1.38 16 43 H 0.17 1.00 8.06 -52.48 -0.42 0.57 16 44 H 0.17 1.03 8.06 -52.49 -0.42 0.60 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 0.87 6.81 -51.93 -0.35 0.51 16 47 H 0.09 1.57 5.60 -51.92 -0.29 1.28 16 48 H 0.09 0.99 5.99 -51.93 -0.31 0.68 16 LS Contribution 375.64 15.07 5.66 5.66 Total: -1.00 -34.17 375.64 -9.74 -43.91 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -7.12 Total: 2.21 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -1.38 Total: 9.46 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: -1.94 Total: -65.61 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.07 Total: -12.51 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.17 -9.74 -43.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042633128.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.641 kcal (2) G-P(sol) polarization free energy of solvation -34.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds