Wall clock time and date at job start Tue Mar 31 2020 17:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47125 * 2 1 4 4 C 1.50694 * 109.47351 * 120.00391 * 2 1 3 5 5 O 1.21282 * 120.00330 * 93.66553 * 4 2 1 6 6 N 1.34777 * 120.00024 * 273.67028 * 4 2 1 7 7 C 1.46499 * 119.99790 * 359.97438 * 6 4 2 8 8 C 1.46504 * 120.00227 * 180.02562 * 6 4 2 9 9 C 1.50692 * 109.47466 * 89.99188 * 8 6 4 10 10 H 1.08003 * 120.00139 * 0.02562 * 9 8 6 11 11 C 1.37873 * 120.00172 * 179.97438 * 9 8 6 12 12 N 1.31518 * 119.99830 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 120.00262 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47016 * 90.00204 * 13 11 9 15 15 H 1.48496 * 109.47164 * 209.99949 * 13 11 9 16 16 H 1.48500 * 109.47074 * 330.00120 * 13 11 9 17 17 N 1.46903 * 109.46633 * 240.00105 * 2 1 3 18 18 C 1.46959 * 110.99677 * 186.77860 * 17 2 1 19 19 C 1.53049 * 109.36486 * 183.18571 * 18 17 2 20 20 N 1.46956 * 109.36912 * 301.60614 * 19 18 17 21 21 C 1.38997 * 111.00237 * 183.18465 * 20 19 18 22 22 C 1.39337 * 120.09595 * 180.02562 * 21 20 19 23 23 N 1.31917 * 119.89094 * 180.02562 * 22 21 20 24 24 C 1.32274 * 120.08514 * 359.97438 * 23 22 21 25 25 C 1.38157 * 120.19621 * 0.27282 * 24 23 22 26 26 N 1.32250 * 120.10509 * 359.43858 * 25 24 23 27 27 C 1.46955 * 110.87848 * 59.31527 * 20 19 18 28 28 C 1.46949 * 111.00167 * 310.58230 * 17 2 1 29 29 H 1.09003 * 109.47188 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46326 * 299.99536 * 1 2 3 31 31 H 1.08993 * 109.47104 * 59.99516 * 1 2 3 32 32 H 1.09000 * 109.46909 * 90.00943 * 7 6 4 33 33 H 1.08997 * 109.47307 * 210.00344 * 7 6 4 34 34 H 1.08993 * 109.47454 * 330.00391 * 7 6 4 35 35 H 1.09002 * 109.46954 * 209.99514 * 8 6 4 36 36 H 1.09001 * 109.46584 * 329.99165 * 8 6 4 37 37 H 0.97002 * 119.99752 * 179.97438 * 12 11 9 38 38 H 1.09005 * 109.48539 * 63.22881 * 18 17 2 39 39 H 1.08995 * 109.51147 * 303.17105 * 18 17 2 40 40 H 1.08994 * 109.49485 * 181.63391 * 19 18 17 41 41 H 1.09004 * 109.50146 * 61.58084 * 19 18 17 42 42 H 1.07998 * 120.05332 * 0.03673 * 22 21 20 43 43 H 1.08007 * 119.90187 * 180.02562 * 24 23 22 44 44 H 1.08000 * 119.94501 * 179.70850 * 25 24 23 45 45 H 1.08999 * 109.49139 * 60.65236 * 27 20 19 46 46 H 1.09005 * 109.48584 * 180.71351 * 27 20 19 47 47 H 1.09008 * 109.49028 * 296.77890 * 28 17 2 48 48 H 1.09000 * 109.49434 * 56.82458 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.2979 -1.8929 1.1820 6 7 2.1866 -0.0319 2.3846 7 6 1.8664 1.3965 2.4429 8 6 2.6756 -0.7224 3.5806 9 6 4.1797 -0.6438 3.6265 10 1 4.7178 -0.1303 2.8434 11 6 4.8691 -1.2263 4.6688 12 7 4.2138 -1.8511 5.6228 13 14 6.7337 -1.1281 4.7262 14 1 7.1425 0.0930 5.4656 15 1 7.2715 -2.3280 5.4162 16 1 7.2691 -1.0714 3.3422 17 7 2.0196 -0.6925 -1.1995 18 6 3.4796 -0.8540 -1.1553 19 6 3.9576 -1.5063 -2.4547 20 7 3.2917 -2.8057 -2.6214 21 6 3.7550 -3.4609 -3.7564 22 6 3.2480 -4.7136 -4.0958 23 7 3.6909 -5.3320 -5.1736 24 6 4.6144 -4.7642 -5.9315 25 6 5.1232 -3.5245 -5.5955 26 7 4.6806 -2.8951 -4.5198 27 6 1.8317 -2.6441 -2.6656 28 6 1.3537 -1.9918 -1.3662 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 0.8200 1.5231 2.7205 33 1 2.5004 1.8809 3.1855 34 1 2.0405 1.8481 1.4664 35 1 2.2596 -0.2482 4.4695 36 1 2.3672 -1.7674 3.5483 37 1 4.6988 -2.2612 6.3559 38 1 3.7500 -1.4868 -0.3099 39 1 3.9507 0.1226 -1.0439 40 1 5.0368 -1.6536 -2.4122 41 1 3.7117 -0.8608 -3.2979 42 1 2.4936 -5.1774 -3.4776 43 1 4.9746 -5.2730 -6.8135 44 1 5.8805 -3.0667 -6.2146 45 1 1.5613 -2.0114 -3.5110 46 1 1.3610 -3.6209 -2.7768 47 1 1.6000 -2.6375 -0.5232 48 1 0.2745 -1.8447 -1.4084 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042633128.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:09 Heat of formation + Delta-G solvation = 29.630591 kcal Electronic energy + Delta-G solvation = -29700.794554 eV Core-core repulsion = 25791.063023 eV Total energy + Delta-G solvation = -3909.731531 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.35523 -41.47843 -39.56993 -37.16655 -36.37934 -35.03816 -34.75438 -33.02539 -32.00510 -30.88917 -29.67872 -27.59400 -27.30277 -26.10558 -25.67850 -24.32834 -23.96115 -22.93913 -21.23764 -19.82492 -18.75756 -18.72615 -18.48787 -18.04820 -17.65640 -17.27155 -16.64672 -16.37396 -16.18100 -15.93652 -15.80503 -15.50004 -15.29994 -15.13285 -14.82741 -14.47543 -14.10964 -13.94679 -13.63793 -13.46501 -13.40055 -13.23266 -13.03601 -12.93385 -12.76955 -12.67750 -12.53898 -12.49842 -12.31176 -12.21689 -12.11203 -11.94241 -11.75756 -11.64446 -11.09796 -10.98558 -10.67334 -10.10387 -9.40338 -9.29441 -9.13902 -8.25569 -6.40308 -0.16012 0.14775 1.32044 1.35227 1.45045 1.81637 2.28218 2.30802 2.45620 2.72198 2.78935 3.03808 3.27252 3.39412 3.54993 3.70307 3.78874 3.85419 4.05995 4.11967 4.17680 4.28587 4.30140 4.34678 4.41761 4.43632 4.49543 4.56222 4.65957 4.70031 4.77600 4.86615 4.93248 4.95676 4.98367 5.01526 5.13208 5.21397 5.24467 5.28275 5.50132 5.54452 5.78229 5.82797 5.90024 5.97878 6.03725 6.38454 6.67165 6.79647 6.82902 7.26094 7.49247 8.81109 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012140 B = 0.003357 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.845579 B = 8338.857520 C = 9817.222136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.067 3.933 3 H 0.125 0.875 4 C 0.471 3.529 5 O -0.585 6.585 6 N -0.608 5.608 7 C 0.075 3.925 8 C 0.261 3.739 9 C -0.539 4.539 10 H 0.050 0.950 11 C 0.008 3.992 12 N -0.928 5.928 13 Si 0.964 3.036 14 H -0.261 1.261 15 H -0.281 1.281 16 H -0.275 1.275 17 N -0.497 5.497 18 C 0.041 3.959 19 C 0.091 3.909 20 N -0.486 5.486 21 C 0.256 3.744 22 C 0.027 3.973 23 N -0.438 5.438 24 C 0.011 3.989 25 C 0.082 3.918 26 N -0.502 5.502 27 C 0.072 3.928 28 C 0.033 3.967 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.021 0.979 36 H -0.005 1.005 37 H 0.267 0.733 38 H 0.025 0.975 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.176 0.824 43 H 0.203 0.797 44 H 0.204 0.796 45 H 0.062 0.938 46 H 0.103 0.897 47 H 0.048 0.952 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.779 4.239 -22.902 23.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.045 4.045 3 H 0.142 0.858 4 C 0.258 3.742 5 O -0.466 6.466 6 N -0.340 5.340 7 C -0.067 4.067 8 C 0.139 3.861 9 C -0.577 4.577 10 H 0.068 0.932 11 C -0.191 4.191 12 N -0.568 5.568 13 Si 0.788 3.212 14 H -0.186 1.186 15 H -0.207 1.207 16 H -0.200 1.200 17 N -0.220 5.220 18 C -0.087 4.087 19 C -0.036 4.036 20 N -0.204 5.204 21 C 0.022 3.978 22 C -0.137 4.137 23 N -0.152 5.152 24 C -0.149 4.149 25 C -0.079 4.079 26 N -0.223 5.223 27 C -0.053 4.053 28 C -0.095 4.095 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.121 0.879 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.039 0.961 36 H 0.013 0.987 37 H 0.076 0.924 38 H 0.044 0.956 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.193 0.807 43 H 0.220 0.780 44 H 0.221 0.779 45 H 0.080 0.920 46 H 0.121 0.879 47 H 0.066 0.934 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.688 3.603 -22.679 23.657 hybrid contribution 1.372 -0.452 1.155 1.850 sum -4.316 3.150 -21.523 22.177 Atomic orbital electron populations 1.21839 0.89672 1.03057 1.04685 1.22121 0.99048 0.99059 0.84283 0.85779 1.22530 0.77969 0.87630 0.86039 1.90604 1.53228 1.18153 1.84595 1.48342 1.63317 1.11416 1.10915 1.21997 1.01409 0.79393 1.03857 1.18689 0.93304 0.91505 0.82578 1.21660 0.92899 1.35425 1.07766 0.93159 1.25829 1.03705 0.94465 0.95068 1.70049 1.37686 1.36726 1.12332 0.85469 0.79287 0.78255 0.78140 1.18571 1.20692 1.20022 1.62873 1.04545 1.20858 1.33771 1.22322 0.88892 1.00485 0.97018 1.21814 0.98287 0.86957 0.96568 1.59186 1.08220 1.22462 1.30526 1.20993 0.94003 0.93904 0.88872 1.23370 1.02173 0.92045 0.96107 1.68387 1.09678 1.33617 1.03556 1.24157 0.94610 0.95054 1.01090 1.24227 0.97933 0.93290 0.92424 1.68417 1.12827 1.35399 1.05664 1.22388 0.82848 1.01999 0.98053 1.22569 0.99991 0.90095 0.96866 0.92669 0.90556 0.87936 0.90776 0.91775 0.88809 0.96123 0.98722 0.92434 0.95634 0.89418 0.90735 0.91697 0.80723 0.77997 0.77933 0.91968 0.87894 0.93353 0.87240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.57 71.98 0.62 -2.11 16 2 C 0.07 1.82 2.32 44.17 0.10 1.92 16 3 H 0.12 2.83 6.00 -2.39 -0.01 2.82 16 4 C 0.47 18.84 5.89 87.66 0.52 19.35 16 5 O -0.58 -29.26 11.88 -3.04 -0.04 -29.30 16 6 N -0.61 -25.37 2.86 -851.16 -2.43 -27.81 16 7 C 0.08 2.17 10.08 127.77 1.29 3.46 16 8 C 0.26 14.17 5.16 85.63 0.44 14.62 16 9 C -0.54 -31.41 9.39 25.60 0.24 -31.17 16 10 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 11 C 0.01 0.48 5.46 84.65 0.46 0.95 16 12 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 13 Si 0.96 45.76 29.54 68.60 2.03 47.78 16 14 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 15 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 16 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 17 N -0.50 -13.70 4.79 -874.87 -4.19 -17.89 16 18 C 0.04 1.33 5.10 86.31 0.44 1.77 16 19 C 0.09 2.61 4.80 86.31 0.41 3.03 16 20 N -0.49 -13.82 4.74 -700.95 -3.32 -17.15 16 21 C 0.26 6.70 6.40 133.04 0.85 7.55 16 22 C 0.03 0.64 10.37 84.94 0.88 1.53 16 23 N -0.44 -9.79 10.49 -194.67 -2.04 -11.83 16 24 C 0.01 0.17 11.21 84.61 0.95 1.12 16 25 C 0.08 1.39 11.21 84.61 0.95 2.34 16 26 N -0.50 -12.26 8.89 -192.64 -1.71 -13.97 16 27 C 0.07 1.70 5.37 86.31 0.46 2.16 16 28 C 0.03 0.89 4.74 86.31 0.41 1.29 16 29 H 0.05 1.24 6.25 -2.39 -0.01 1.22 16 30 H 0.08 1.41 7.95 -2.39 -0.02 1.40 16 31 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 34 H 0.09 2.03 5.83 -2.39 -0.01 2.02 16 35 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 36 H -0.01 -0.34 7.42 -2.39 -0.02 -0.36 16 37 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.03 1.09 5.91 -2.38 -0.01 1.08 16 39 H 0.09 2.58 8.14 -2.39 -0.02 2.57 16 40 H 0.07 2.29 7.84 -2.39 -0.02 2.27 16 41 H 0.06 1.73 8.06 -2.38 -0.02 1.71 16 42 H 0.18 3.67 7.18 -2.91 -0.02 3.65 16 43 H 0.20 1.63 8.06 -2.91 -0.02 1.61 16 44 H 0.20 1.75 8.06 -2.91 -0.02 1.73 16 45 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.10 2.03 6.81 -2.38 -0.02 2.01 16 47 H 0.05 1.78 5.60 -2.38 -0.01 1.77 16 48 H 0.11 2.39 5.99 -2.39 -0.01 2.38 16 Total: -1.00 -80.19 375.64 -1.43 -81.61 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.97 Total: 17.37 kcal Atomic # 6 Polarization: 18.77 SS G_CDS: 9.02 Total: 27.80 kcal Atomic # 7 Polarization: -131.86 SS G_CDS: -13.41 Total: -145.27 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.04 Total: -29.30 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -80.19 -1.43 -81.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042633128.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.246 kcal (2) G-P(sol) polarization free energy of solvation -80.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds