Wall clock time and date at job start Tue Mar 31 2020 18:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47147 * 2 1 4 4 C 1.46506 * 119.99936 * 89.99619 * 3 2 1 5 5 C 1.50703 * 109.46877 * 90.00092 * 4 3 2 6 6 H 1.08005 * 119.99817 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00081 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00254 * 180.02562 * 7 5 4 9 9 Si 1.86811 * 119.99850 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46778 * 89.99559 * 9 7 5 11 11 H 1.48493 * 109.46886 * 209.99446 * 9 7 5 12 12 H 1.48492 * 109.47026 * 329.99859 * 9 7 5 13 13 C 1.34773 * 120.00036 * 270.27655 * 3 2 1 14 14 O 1.21281 * 120.00220 * 179.72597 * 13 3 2 15 15 C 1.50706 * 120.00080 * 359.72107 * 13 3 2 16 16 N 1.46889 * 109.47109 * 180.02562 * 15 13 3 17 17 C 1.46959 * 111.00102 * 293.79785 * 16 15 13 18 18 C 1.53049 * 109.36362 * 176.81680 * 17 16 15 19 19 N 1.46955 * 109.36833 * 58.40206 * 18 17 16 20 20 C 1.38411 * 110.99698 * 176.81001 * 19 18 17 21 21 N 1.32498 * 119.21465 * 123.53555 * 20 19 18 22 22 C 1.32272 * 120.73866 * 179.71693 * 21 20 19 23 23 C 1.38604 * 119.19858 * 0.53856 * 22 21 20 24 24 C 1.38610 * 118.55936 * 359.73352 * 23 22 21 25 25 N 1.32283 * 119.19437 * 359.97438 * 24 23 22 26 26 C 1.46955 * 110.87907 * 300.67589 * 19 18 17 27 27 C 1.46965 * 110.99870 * 170.00198 * 16 15 13 28 28 H 1.09003 * 109.47272 * 300.00321 * 1 2 3 29 29 H 1.08997 * 109.47273 * 60.00010 * 1 2 3 30 30 H 1.09005 * 109.47395 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47531 * 239.99672 * 2 1 3 32 32 H 1.09005 * 109.46544 * 119.99607 * 2 1 3 33 33 H 1.09000 * 109.46803 * 209.99571 * 4 3 2 34 34 H 1.09000 * 109.47214 * 330.00364 * 4 3 2 35 35 H 0.97008 * 120.00053 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.46762 * 300.00389 * 15 13 3 37 37 H 1.08998 * 109.46924 * 59.99727 * 15 13 3 38 38 H 1.09007 * 109.48694 * 296.78149 * 17 16 15 39 39 H 1.09001 * 109.48949 * 56.84570 * 17 16 15 40 40 H 1.09002 * 109.48821 * 298.42916 * 18 17 16 41 41 H 1.09009 * 109.50251 * 178.38247 * 18 17 16 42 42 H 1.08002 * 120.39672 * 180.24659 * 22 21 20 43 43 H 1.07998 * 120.72066 * 179.70961 * 23 22 21 44 44 H 1.07991 * 120.40423 * 179.97438 * 24 23 22 45 45 H 1.08990 * 109.49170 * 299.35491 * 26 19 18 46 46 H 1.08995 * 109.50433 * 179.29789 * 26 19 18 47 47 H 1.08995 * 109.48409 * 303.15092 * 27 16 15 48 48 H 1.08997 * 109.48809 * 63.21611 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 1.2688 5 6 3.6857 1.8350 1.7039 6 1 4.3428 1.2309 1.0958 7 6 4.1493 2.3905 2.8775 8 7 5.3915 2.1842 3.2569 9 14 3.0129 3.4360 3.9288 10 1 2.3080 2.5699 4.9077 11 1 3.8103 4.4567 4.6550 12 1 2.0172 4.1123 3.0593 13 6 2.2377 2.0184 -1.1671 14 8 2.6372 3.1635 -1.1672 15 6 1.9865 1.3080 -2.4723 16 7 2.2990 2.2100 -3.5888 17 6 1.3654 3.3443 -3.6266 18 6 1.7721 4.2990 -4.7515 19 7 1.7686 3.5750 -6.0303 20 6 2.0630 4.4249 -7.0823 21 7 3.0851 4.1414 -7.8762 22 6 3.3899 4.9297 -8.8937 23 6 2.6324 6.0687 -9.1171 24 6 1.5736 6.3383 -8.2640 25 7 1.3189 5.5052 -7.2685 26 6 2.7023 2.4407 -5.9925 27 6 2.2955 1.4859 -4.8676 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.0955 3.1411 1.1383 34 1 1.5816 1.6877 2.0284 35 1 5.7175 2.5747 4.0829 36 1 2.6203 0.4232 -2.5321 37 1 0.9397 1.0094 -2.5279 38 1 0.3550 2.9777 -3.8082 39 1 1.3953 3.8718 -2.6732 40 1 2.7719 4.6867 -4.5558 41 1 1.0643 5.1266 -4.8002 42 1 4.2218 4.6911 -9.5398 43 1 2.8623 6.7321 -9.9378 44 1 0.9641 7.2176 -8.4103 45 1 3.7125 2.8072 -5.8109 46 1 2.6727 1.9131 -6.9458 47 1 3.0035 0.6587 -4.8190 48 1 1.2957 1.0983 -5.0633 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051206085.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:53 Heat of formation + Delta-G solvation = 33.401706 kcal Electronic energy + Delta-G solvation = -28921.794191 eV Core-core repulsion = 25012.226188 eV Total energy + Delta-G solvation = -3909.568003 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.25688 -41.03839 -39.72063 -37.09619 -36.41272 -34.83720 -34.77174 -32.42483 -32.07149 -31.79562 -30.33521 -28.90183 -26.29286 -25.89346 -24.39531 -24.26630 -23.97300 -23.41049 -21.06827 -19.85917 -19.08903 -18.98990 -18.48387 -17.91930 -17.32788 -16.77238 -16.65518 -16.39009 -16.26406 -15.89333 -15.68588 -15.49605 -15.28426 -15.12113 -14.71297 -14.66346 -14.43973 -14.28706 -14.19712 -13.71002 -13.44680 -13.22266 -13.13053 -12.90491 -12.58411 -12.41282 -12.35774 -12.22990 -12.12970 -11.99243 -11.93860 -11.85688 -11.78958 -11.73131 -11.21122 -10.81513 -10.53266 -10.17972 -9.50508 -9.41248 -9.24431 -8.33182 -6.37556 -0.03924 0.18978 1.30906 1.35806 1.46501 1.84905 2.09594 2.21277 2.31455 2.79140 2.90734 3.01151 3.20174 3.57063 3.65166 3.81070 3.82756 3.99680 4.08470 4.14984 4.17064 4.25909 4.30025 4.35819 4.37672 4.45174 4.46989 4.55105 4.65528 4.73955 4.77866 4.81692 4.83393 4.91374 4.94270 4.98022 5.02776 5.03824 5.30558 5.40217 5.47445 5.48817 5.67648 5.70337 5.88470 6.04817 6.25339 6.26967 6.63992 6.77547 7.14027 7.23585 7.50465 8.83950 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017626 B = 0.002536 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.220574 B =11039.017788 C =11709.024584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.602 5.602 4 C 0.228 3.772 5 C -0.532 4.532 6 H 0.028 0.972 7 C 0.009 3.991 8 N -0.947 5.947 9 Si 0.948 3.052 10 H -0.251 1.251 11 H -0.283 1.283 12 H -0.257 1.257 13 C 0.498 3.502 14 O -0.577 6.577 15 C 0.054 3.946 16 N -0.548 5.548 17 C 0.063 3.937 18 C 0.088 3.912 19 N -0.467 5.467 20 C 0.470 3.530 21 N -0.572 5.572 22 C 0.158 3.842 23 C -0.246 4.246 24 C 0.159 3.841 25 N -0.559 5.559 26 C 0.082 3.918 27 C 0.060 3.940 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.017 0.983 34 H 0.045 0.955 35 H 0.268 0.732 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.028 0.972 41 H 0.095 0.905 42 H 0.199 0.801 43 H 0.186 0.814 44 H 0.201 0.799 45 H 0.042 0.958 46 H 0.101 0.899 47 H 0.106 0.894 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.255 0.422 -25.632 28.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.334 5.334 4 C 0.105 3.895 5 C -0.571 4.571 6 H 0.046 0.954 7 C -0.188 4.188 8 N -0.587 5.587 9 Si 0.770 3.230 10 H -0.175 1.175 11 H -0.209 1.209 12 H -0.181 1.181 13 C 0.287 3.713 14 O -0.457 6.457 15 C -0.077 4.077 16 N -0.273 5.273 17 C -0.065 4.065 18 C -0.039 4.039 19 N -0.188 5.188 20 C 0.114 3.886 21 N -0.292 5.292 22 C -0.008 4.008 23 C -0.268 4.268 24 C -0.008 4.008 25 N -0.278 5.278 26 C -0.045 4.045 27 C -0.067 4.067 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.035 0.965 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.140 0.860 37 H 0.110 0.890 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.047 0.953 41 H 0.113 0.887 42 H 0.216 0.784 43 H 0.204 0.796 44 H 0.217 0.783 45 H 0.060 0.940 46 H 0.120 0.880 47 H 0.124 0.876 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.154 0.377 -24.655 27.490 hybrid contribution 0.441 1.078 0.259 1.193 sum -11.713 1.455 -24.396 27.101 Atomic orbital electron populations 1.22155 0.94064 1.03597 1.01968 1.21774 0.95502 0.81159 1.04003 1.48066 1.64482 1.15164 1.05719 1.19239 0.94552 0.93024 0.82665 1.21569 0.97144 1.31814 1.06531 0.95387 1.25856 0.96725 0.97215 0.99047 1.70057 1.17468 1.46718 1.24451 0.85715 0.79135 0.79110 0.79017 1.17472 1.20890 1.18061 1.21178 0.77099 0.86754 0.86285 1.90608 1.46980 1.20427 1.87674 1.21966 1.02939 0.95578 0.87169 1.61709 1.52522 1.09842 1.03254 1.22172 0.93724 0.92350 0.98267 1.22025 1.00568 0.96164 0.85121 1.58700 1.49027 1.08719 1.02307 1.21181 0.86326 0.88303 0.92764 1.68398 1.16354 1.35519 1.08978 1.23764 0.97236 0.88888 0.90904 1.23157 0.98767 1.00834 1.04079 1.23788 0.94007 0.96258 0.86701 1.68024 1.30315 1.05353 1.24125 1.22046 0.92894 0.89898 0.99682 1.22334 1.02219 0.95912 0.86283 0.93555 0.92177 0.88754 0.88497 0.91010 0.96476 0.93704 0.92351 0.86039 0.89049 0.92925 0.90376 0.95348 0.88664 0.78383 0.79634 0.78278 0.93961 0.88039 0.87555 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 10.24 71.98 0.74 -2.67 16 2 C 0.10 2.78 5.93 86.38 0.51 3.29 16 3 N -0.60 -24.24 2.46 -826.13 -2.03 -26.27 16 4 C 0.23 11.23 4.23 85.63 0.36 11.59 16 5 C -0.53 -31.79 9.94 25.60 0.25 -31.53 16 6 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 7 C 0.01 0.56 5.47 84.65 0.46 1.02 16 8 N -0.95 -60.83 13.96 21.44 0.30 -60.53 16 9 Si 0.95 45.25 27.47 68.60 1.88 47.14 16 10 H -0.25 -10.91 7.11 99.48 0.71 -10.20 16 11 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.26 -11.86 6.54 99.48 0.65 -11.21 16 13 C 0.50 20.12 7.37 87.66 0.65 20.77 16 14 O -0.58 -29.23 13.91 -3.03 -0.04 -29.27 16 15 C 0.05 1.49 4.00 85.56 0.34 1.83 16 16 N -0.55 -15.98 4.45 -900.26 -4.00 -19.99 16 17 C 0.06 1.88 5.26 86.31 0.45 2.33 16 18 C 0.09 2.57 5.46 86.31 0.47 3.04 16 19 N -0.47 -12.48 4.77 -708.32 -3.38 -15.86 16 20 C 0.47 12.30 7.17 261.48 1.88 14.17 16 21 N -0.57 -13.23 8.70 -197.98 -1.72 -14.95 16 22 C 0.16 2.35 11.30 84.71 0.96 3.30 16 23 C -0.25 -2.71 10.16 22.45 0.23 -2.48 16 24 C 0.16 2.42 11.30 84.71 0.96 3.37 16 25 N -0.56 -13.48 9.72 -197.98 -1.92 -15.41 16 26 C 0.08 1.97 4.77 86.31 0.41 2.38 16 27 C 0.06 1.30 5.61 86.31 0.48 1.78 16 28 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.18 7.20 -2.39 -0.02 1.17 16 30 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.10 2.15 6.45 -2.39 -0.02 2.14 16 32 H 0.07 2.22 8.07 -2.38 -0.02 2.20 16 33 H 0.02 0.92 6.47 -2.39 -0.02 0.91 16 34 H 0.05 2.02 7.50 -2.39 -0.02 2.00 16 35 H 0.27 15.97 8.31 -92.70 -0.77 15.20 16 36 H 0.12 2.86 7.29 -2.39 -0.02 2.84 16 37 H 0.09 1.96 7.14 -2.39 -0.02 1.94 16 38 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.08 2.85 5.85 -2.39 -0.01 2.84 16 40 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.10 2.71 7.64 -2.38 -0.02 2.69 16 42 H 0.20 1.43 8.06 -2.91 -0.02 1.41 16 43 H 0.19 0.48 8.06 -2.91 -0.02 0.46 16 44 H 0.20 1.51 8.06 -2.92 -0.02 1.48 16 45 H 0.04 1.19 8.03 -2.39 -0.02 1.17 16 46 H 0.10 2.17 7.81 -2.39 -0.02 2.15 16 47 H 0.11 1.91 8.07 -2.39 -0.02 1.89 16 48 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -85.90 383.16 -0.87 -86.76 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.89 Total: 16.16 kcal Atomic # 6 Polarization: 23.04 SS G_CDS: 9.15 Total: 32.20 kcal Atomic # 7 Polarization: -140.24 SS G_CDS: -12.76 Total: -152.99 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.04 Total: -29.27 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.88 Total: 47.14 kcal Total: -85.90 -0.87 -86.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051206085.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.167 kcal (2) G-P(sol) polarization free energy of solvation -85.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds