Wall clock time and date at job start Tue Mar 31 2020 18:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47320 * 2 1 4 4 C 1.46498 * 119.99781 * 270.00166 * 3 2 1 5 5 C 1.50703 * 109.47051 * 269.99863 * 4 3 2 6 6 H 1.07997 * 120.00164 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00018 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99856 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00157 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46641 * 89.99886 * 9 7 5 11 11 H 1.48489 * 109.47354 * 210.00097 * 9 7 5 12 12 H 1.48501 * 109.46924 * 330.00480 * 9 7 5 13 13 C 1.34773 * 120.00052 * 89.99853 * 3 2 1 14 14 O 1.21280 * 120.00125 * 180.02562 * 13 3 2 15 15 C 1.50703 * 120.00078 * 0.02562 * 13 3 2 16 16 N 1.46899 * 109.46860 * 180.02562 * 15 13 3 17 17 C 1.48108 * 111.00155 * 66.04669 * 16 15 13 18 18 C 1.46134 * 112.18875 * 156.48704 * 17 16 15 19 19 C 1.54255 * 111.90643 * 60.86089 * 18 17 16 20 20 N 1.44245 * 108.64285 * 281.38370 * 19 18 17 21 21 C 1.46907 * 110.99707 * 219.84625 * 20 19 18 22 22 C 1.53004 * 109.46935 * 183.55855 * 21 20 19 23 23 F 1.39896 * 109.47289 * 306.27559 * 22 21 20 24 24 F 1.39904 * 109.46909 * 66.27454 * 22 21 20 25 25 C 1.48196 * 114.27123 * 93.39472 * 20 19 18 26 26 C 1.44258 * 111.00243 * 303.39856 * 16 15 13 27 27 H 1.08999 * 109.47186 * 60.00007 * 1 2 3 28 28 H 1.09000 * 109.47528 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47519 * 300.00228 * 1 2 3 30 30 H 1.09006 * 109.46672 * 239.99893 * 2 1 3 31 31 H 1.08999 * 109.47186 * 119.99993 * 2 1 3 32 32 H 1.09001 * 109.47853 * 29.99821 * 4 3 2 33 33 H 1.09000 * 109.47171 * 150.00080 * 4 3 2 34 34 H 0.96998 * 119.99701 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.47084 * 59.99912 * 15 13 3 36 36 H 1.08998 * 109.46696 * 299.99642 * 15 13 3 37 37 H 1.09001 * 108.93540 * 35.78975 * 17 16 15 38 38 H 1.08998 * 108.93518 * 277.18355 * 17 16 15 39 39 H 1.09001 * 108.99548 * 181.48846 * 18 17 16 40 40 H 1.09005 * 108.99353 * 300.24029 * 18 17 16 41 41 H 1.09004 * 109.60467 * 41.13141 * 19 18 17 42 42 H 1.08997 * 109.60481 * 161.63246 * 19 18 17 43 43 H 1.08995 * 109.47015 * 303.56009 * 21 20 19 44 44 H 1.08992 * 109.47011 * 63.56048 * 21 20 19 45 45 H 1.08993 * 109.46828 * 186.26949 * 22 21 20 46 46 H 1.09000 * 108.82104 * 78.98624 * 25 20 19 47 47 H 1.08999 * 108.82272 * 197.39003 * 25 20 19 48 48 H 1.09003 * 108.86495 * 96.34329 * 26 16 15 49 49 H 1.09000 * 108.78366 * 337.87879 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.6857 1.8349 -1.7038 6 1 4.3428 1.2308 -1.0958 7 6 4.1494 2.3903 -2.8775 8 7 3.3496 3.1272 -3.6172 9 14 5.9138 2.0973 -3.4165 10 1 5.9775 0.8766 -4.2596 11 1 6.3927 3.2650 -4.1989 12 1 6.7736 1.9173 -2.2192 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9923 1.3060 2.4723 16 7 2.3098 2.2063 3.5888 17 6 1.3748 3.3543 3.6274 18 6 1.2830 3.9467 4.9601 19 6 2.6441 4.4869 5.4448 20 7 3.4422 3.3778 5.9070 21 6 4.1894 3.7364 7.1200 22 6 5.0894 2.5684 7.5285 23 9 4.3207 1.4052 7.6430 24 9 6.0785 2.3800 6.5572 25 6 4.3424 2.8048 4.8787 26 6 3.6693 2.6805 3.5000 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0285 33 1 2.0955 3.1410 -1.1384 34 1 3.6757 3.5177 -4.4430 35 1 2.6228 0.4187 2.5299 36 1 0.9444 1.0115 2.5302 37 1 0.3850 3.0147 3.3222 38 1 1.7184 4.1140 2.9254 39 1 0.5645 4.7660 4.9354 40 1 0.9316 3.1897 5.6614 41 1 3.1539 4.9862 4.6208 42 1 2.4881 5.1911 6.2620 43 1 4.8024 4.6157 6.9225 44 1 3.4896 3.9551 7.9264 45 1 5.5589 2.7896 8.4869 46 1 5.2207 3.4435 4.7849 47 1 4.6616 1.8144 5.2031 48 1 3.6708 3.6579 3.0176 49 1 4.2443 1.9852 2.8884 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091084883.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:44 Heat of formation + Delta-G solvation = -134.090118 kcal Electronic energy + Delta-G solvation = -30958.879521 eV Core-core repulsion = 26591.359341 eV Total energy + Delta-G solvation = -4367.520180 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.197 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.84801 -47.78473 -41.43482 -39.67420 -37.36140 -36.45417 -34.95080 -33.84470 -31.78362 -31.47543 -29.99489 -28.65543 -26.55037 -26.45812 -24.72714 -23.95167 -23.41848 -21.73256 -21.17286 -19.83503 -18.67030 -18.58293 -18.21510 -17.93472 -17.68484 -17.19987 -16.77547 -16.50011 -16.20505 -16.03360 -15.84089 -15.40625 -14.96742 -14.79632 -14.66940 -14.43941 -14.37779 -14.25065 -14.09518 -13.83531 -13.66942 -13.46817 -13.36265 -13.25805 -13.15037 -12.87234 -12.72477 -12.55676 -12.46877 -12.23619 -12.12005 -11.96991 -11.87131 -11.79939 -11.74767 -11.47767 -11.25376 -11.05507 -10.68054 -9.43696 -9.25629 -9.06395 -8.26106 -6.41177 1.32047 1.34818 1.45075 1.80727 2.28700 2.44442 2.68702 2.95069 3.02993 3.05643 3.47534 3.71459 3.72439 3.90462 3.94983 4.05643 4.10781 4.15851 4.20379 4.29423 4.42145 4.48843 4.53079 4.57121 4.61853 4.64736 4.74432 4.77255 4.82238 4.87717 4.92512 4.98101 5.02491 5.04055 5.09617 5.16750 5.19112 5.38037 5.48861 5.55102 5.82606 5.92195 6.02737 6.03718 6.15687 6.24711 6.66794 6.80307 7.25054 7.47543 8.80696 Molecular weight = 333.20amu Principal moments of inertia in cm(-1) A = 0.013138 B = 0.003295 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.773228 B = 8494.606090 C = 9433.984132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.099 3.901 3 N -0.603 5.603 4 C 0.265 3.735 5 C -0.541 4.541 6 H 0.050 0.950 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.275 1.275 13 C 0.465 3.535 14 O -0.590 6.590 15 C 0.045 3.955 16 N -0.487 5.487 17 C 0.053 3.947 18 C -0.102 4.102 19 C 0.068 3.932 20 N -0.542 5.542 21 C 0.005 3.995 22 C 0.254 3.746 23 F -0.212 7.212 24 F -0.225 7.225 25 C 0.079 3.921 26 C 0.065 3.935 27 H 0.036 0.964 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.018 0.982 33 H -0.007 1.007 34 H 0.267 0.733 35 H 0.116 0.884 36 H 0.127 0.873 37 H 0.067 0.933 38 H 0.019 0.981 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.017 0.983 42 H 0.097 0.903 43 H 0.070 0.930 44 H 0.130 0.870 45 H 0.157 0.843 46 H 0.032 0.968 47 H 0.074 0.926 48 H 0.027 0.973 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.803 -2.998 24.683 25.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 N -0.334 5.334 4 C 0.143 3.857 5 C -0.580 4.580 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.790 3.210 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.200 1.200 13 C 0.253 3.747 14 O -0.471 6.471 15 C -0.086 4.086 16 N -0.209 5.209 17 C -0.074 4.074 18 C -0.140 4.140 19 C -0.060 4.060 20 N -0.268 5.268 21 C -0.123 4.123 22 C 0.201 3.799 23 F -0.193 7.193 24 F -0.206 7.206 25 C -0.049 4.049 26 C -0.065 4.065 27 H 0.055 0.945 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.036 0.964 33 H 0.011 0.989 34 H 0.076 0.924 35 H 0.134 0.866 36 H 0.145 0.855 37 H 0.086 0.914 38 H 0.037 0.963 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.035 0.965 42 H 0.115 0.885 43 H 0.088 0.912 44 H 0.148 0.852 45 H 0.174 0.826 46 H 0.050 0.950 47 H 0.092 0.908 48 H 0.045 0.955 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.975 -2.965 25.041 25.391 hybrid contribution 1.622 1.169 -2.410 3.131 sum -1.353 -1.796 22.631 22.742 Atomic orbital electron populations 1.22135 0.94451 1.03548 1.01585 1.21747 0.95406 0.81371 1.03834 1.48434 1.63539 1.15066 1.06389 1.18623 0.95058 0.91300 0.80696 1.21692 0.97905 1.31901 1.06500 0.93156 1.25850 1.02346 0.94444 0.96439 1.70055 1.37788 1.34180 1.14796 0.85437 0.79024 0.78304 0.78186 1.18649 1.20549 1.19977 1.22656 0.77365 0.87189 0.87533 1.90620 1.48139 1.20499 1.87873 1.22644 1.05344 0.96611 0.84045 1.62111 1.02565 1.17801 1.38380 1.21169 0.95825 0.92056 0.98361 1.20532 0.96897 1.00726 0.95847 1.21800 0.93798 0.91291 0.99120 1.60529 1.25839 1.34594 1.05827 1.23480 0.97959 0.95696 0.95140 1.22518 0.82127 0.82669 0.92585 1.92976 1.76959 1.52761 1.96610 1.92952 1.64313 1.95925 1.67436 1.22634 0.92296 0.99716 0.90252 1.21792 0.90159 0.98910 0.95626 0.94504 0.88551 0.92019 0.91215 0.88142 0.96426 0.98923 0.92417 0.86632 0.85525 0.91400 0.96258 0.89897 0.89967 0.96452 0.88517 0.91204 0.85172 0.82594 0.94973 0.90755 0.95478 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 10.24 71.98 0.74 -3.23 16 2 C 0.10 3.05 5.93 86.38 0.51 3.56 16 3 N -0.60 -25.88 2.46 -826.17 -2.03 -27.91 16 4 C 0.27 14.63 5.16 85.63 0.44 15.07 16 5 C -0.54 -31.95 9.39 25.60 0.24 -31.71 16 6 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 7 C 0.01 0.48 5.46 84.66 0.46 0.94 16 8 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 9 Si 0.97 45.91 29.54 68.60 2.03 47.94 16 10 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 13 C 0.46 19.39 6.93 87.66 0.61 19.99 16 14 O -0.59 -30.14 11.90 -3.03 -0.04 -30.18 16 15 C 0.04 1.34 4.13 85.56 0.35 1.70 16 16 N -0.49 -14.87 4.62 -915.38 -4.23 -19.10 16 17 C 0.05 1.56 4.34 83.96 0.36 1.92 16 18 C -0.10 -2.26 5.66 28.91 0.16 -2.10 16 19 C 0.07 1.46 5.41 87.22 0.47 1.93 16 20 N -0.54 -12.05 4.09 -895.09 -3.66 -15.71 16 21 C 0.01 0.07 5.20 86.30 0.45 0.52 16 22 C 0.25 3.76 5.14 71.98 0.37 4.13 16 23 F -0.21 -4.47 16.76 44.97 0.75 -3.71 16 24 F -0.22 -4.82 13.87 44.97 0.62 -4.19 16 25 C 0.08 2.20 4.25 86.37 0.37 2.57 16 26 C 0.06 2.21 3.78 87.11 0.33 2.54 16 27 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.10 1.74 8.14 -2.39 -0.02 1.73 16 29 H 0.06 1.41 7.22 -2.39 -0.02 1.39 16 30 H 0.07 2.32 8.07 -2.38 -0.02 2.30 16 31 H 0.10 2.41 6.44 -2.39 -0.02 2.40 16 32 H 0.02 1.00 8.07 -2.39 -0.02 0.98 16 33 H -0.01 -0.47 7.42 -2.39 -0.02 -0.49 16 34 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 35 H 0.12 3.07 7.37 -2.39 -0.02 3.05 16 36 H 0.13 3.04 6.95 -2.39 -0.02 3.02 16 37 H 0.07 1.85 7.71 -2.39 -0.02 1.83 16 38 H 0.02 0.72 5.94 -2.39 -0.01 0.70 16 39 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.08 1.78 8.12 -2.38 -0.02 1.76 16 41 H 0.02 0.46 6.96 -2.38 -0.02 0.45 16 42 H 0.10 1.45 7.61 -2.39 -0.02 1.43 16 43 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.13 1.14 8.13 -2.39 -0.02 1.12 16 45 H 0.16 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.03 0.92 7.37 -2.39 -0.02 0.90 16 47 H 0.07 2.17 6.13 -2.39 -0.01 2.15 16 48 H 0.03 1.11 5.36 -2.39 -0.01 1.10 16 49 H 0.05 1.74 7.36 -2.39 -0.02 1.72 16 Total: -1.00 -78.66 377.94 0.54 -78.11 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.94 Total: 13.86 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 5.87 Total: 17.84 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -9.64 Total: -119.67 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.04 Total: -30.18 kcal Atomic # 9 Polarization: -9.29 SS G_CDS: 1.38 Total: -7.91 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -78.66 0.54 -78.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091084883.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.975 kcal (2) G-P(sol) polarization free energy of solvation -78.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds