Wall clock time and date at job start Tue Mar 31 2020 18:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46350 * 110.99979 * 2 1 4 4 C 1.53791 * 111.83286 * 178.39279 * 3 2 1 5 5 C 1.51965 * 106.99943 * 57.00009 * 4 3 2 6 6 H 1.09003 * 111.08088 * 59.58675 * 5 4 3 7 7 C 1.53567 * 115.61642 * 187.47665 * 5 4 3 8 8 C 1.55406 * 101.70279 * 153.11047 * 7 5 4 9 9 N 1.48300 * 107.00774 * 337.45412 * 8 7 5 10 10 C 1.34779 * 126.50603 * 174.60684 * 9 8 7 11 11 O 1.21585 * 120.00222 * 180.02562 * 10 9 8 12 12 N 1.34778 * 119.99594 * 0.02831 * 10 9 8 13 13 C 1.40200 * 119.99844 * 180.02562 * 12 10 9 14 14 C 1.40396 * 125.97113 * 359.97438 * 13 12 10 15 15 C 1.35238 * 107.86959 * 180.02562 * 14 13 12 16 16 N 1.34965 * 107.85718 * 359.97438 * 15 14 13 17 17 C 1.46506 * 125.97696 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.46957 * 125.00098 * 17 16 15 19 19 H 1.08002 * 119.99770 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00083 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00147 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00278 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47228 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46793 * 300.00001 * 22 20 18 25 25 H 1.48500 * 109.47000 * 60.00094 * 22 20 18 26 26 N 1.31209 * 125.97201 * 180.30367 * 13 12 10 27 27 C 1.45195 * 106.98943 * 354.87385 * 9 8 7 28 28 H 1.09001 * 109.07598 * 274.69086 * 27 9 8 29 29 C 1.47723 * 110.99818 * 232.76487 * 2 1 3 30 30 H 1.08999 * 109.46561 * 63.95567 * 1 2 3 31 31 H 1.08995 * 109.47033 * 183.95574 * 1 2 3 32 32 H 1.08998 * 109.47031 * 303.96129 * 1 2 3 33 33 H 1.08997 * 109.00980 * 57.78745 * 3 2 1 34 34 H 1.08997 * 109.00601 * 298.99384 * 3 2 1 35 35 H 1.09003 * 109.94708 * 297.62339 * 4 3 2 36 36 H 1.09001 * 109.94154 * 176.37326 * 4 3 2 37 37 H 1.09006 * 110.98157 * 35.00640 * 7 5 4 38 38 H 1.08998 * 111.01397 * 271.23430 * 7 5 4 39 39 H 1.09001 * 109.92730 * 218.11562 * 8 7 5 40 40 H 1.09002 * 109.92308 * 96.79074 * 8 7 5 41 41 H 0.97002 * 120.00607 * 359.97438 * 12 10 9 42 42 H 1.08004 * 126.06777 * 359.97438 * 14 13 12 43 43 H 1.08002 * 126.07487 * 180.02562 * 15 14 13 44 44 H 1.08994 * 109.47197 * 5.00487 * 17 16 15 45 45 H 1.08998 * 109.47414 * 245.00168 * 17 16 15 46 46 H 0.97005 * 119.99661 * 359.97438 * 21 20 18 47 47 H 1.09000 * 109.91659 * 303.71821 * 29 2 1 48 48 H 1.09007 * 109.91205 * 64.80787 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9935 1.3663 0.0000 4 6 3.5307 1.3889 0.0400 5 6 4.0181 0.5918 -1.1585 6 1 3.6581 1.0263 -2.0910 7 6 5.5311 0.3346 -1.2140 8 6 5.5970 -0.9829 -2.0355 9 7 4.2770 -1.6451 -1.9000 10 6 3.8713 -2.7623 -2.5354 11 8 2.7567 -3.2049 -2.3352 12 7 4.7014 -3.3889 -3.3927 13 6 4.2793 -4.5508 -4.0541 14 6 3.0257 -5.1681 -3.9177 15 6 3.0107 -6.2582 -4.7181 16 7 4.2065 -6.3318 -5.3396 17 6 4.6169 -7.3621 -6.2969 18 6 5.0695 -6.7073 -7.5765 19 1 5.0535 -5.6312 -7.6674 20 6 5.5041 -7.4818 -8.6310 21 7 5.5232 -8.7922 -8.5204 22 14 6.0658 -6.6701 -10.2169 23 1 6.4818 -7.7145 -11.1872 24 1 4.9483 -5.8779 -10.7903 25 1 7.2146 -5.7727 -9.9337 26 7 4.9889 -5.2546 -4.9042 27 6 3.5021 -0.8578 -0.9576 28 1 3.7410 -1.1791 0.0562 29 6 1.9984 -0.8345 -1.0980 30 1 -0.3632 0.4512 -0.9233 31 1 -0.3633 -1.0252 0.0709 32 1 -0.3633 0.5741 0.8523 33 1 1.6079 1.8946 0.8719 34 1 1.6544 1.8767 -0.9014 35 1 3.8855 0.9284 0.9622 36 1 3.8893 2.4161 -0.0257 37 1 5.9397 0.1917 -0.2136 38 1 6.0463 1.1437 -1.7318 39 1 6.3795 -1.6296 -1.6384 40 1 5.7937 -0.7576 -3.0837 41 1 5.5905 -3.0357 -3.5527 42 1 2.2171 -4.8326 -3.2852 43 1 2.1877 -6.9470 -4.8391 44 1 3.7743 -8.0215 -6.5045 45 1 5.4376 -7.9429 -5.8759 46 1 5.2319 -9.2137 -7.6968 47 1 1.6004 -1.8463 -1.0205 48 1 1.7241 -0.4004 -2.0596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272435600.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:43 Heat of formation + Delta-G solvation = 72.056767 kcal Electronic energy + Delta-G solvation = -28811.344515 eV Core-core repulsion = 24903.452721 eV Total energy + Delta-G solvation = -3907.891794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.19350 -40.41266 -38.88526 -36.82916 -34.81402 -33.71565 -33.25215 -31.00877 -30.72984 -29.76295 -29.29255 -26.43365 -26.24294 -24.11539 -23.44433 -22.86536 -21.85143 -21.24912 -20.60059 -20.11250 -19.23132 -17.71278 -17.16648 -16.74228 -16.25104 -15.92659 -15.46893 -15.23761 -15.05500 -14.89221 -14.54235 -14.23053 -14.02970 -13.79869 -13.64186 -13.23568 -13.12737 -13.01373 -12.74787 -12.42366 -12.40459 -12.20920 -12.06099 -11.83809 -11.74699 -11.58373 -11.15753 -11.13091 -11.03395 -10.81056 -10.58187 -10.43914 -10.15955 -10.01461 -9.63837 -9.01141 -8.82301 -8.58130 -8.57049 -8.15633 -7.44901 -6.57012 -4.30842 2.21755 2.59907 3.05490 3.27252 3.37969 3.39646 3.58653 3.65817 3.78748 3.92021 4.10799 4.24597 4.38740 4.41851 4.66004 4.77140 4.80728 4.96373 5.01236 5.12802 5.15532 5.16736 5.22077 5.27154 5.35772 5.41613 5.43305 5.49319 5.56740 5.61967 5.63857 5.72953 5.73956 5.78356 5.97110 6.04046 6.28231 6.47451 6.52326 6.67273 6.73935 6.76228 6.83428 7.03265 7.44269 7.64169 7.86219 7.88048 8.35956 8.56160 8.58167 8.65151 9.37282 10.80443 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020979 B = 0.002328 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.322695 B =12025.147499 C =12675.777445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.553 5.553 3 C 0.057 3.943 4 C -0.104 4.104 5 C -0.112 4.112 6 H 0.084 0.916 7 C -0.120 4.120 8 C 0.096 3.904 9 N -0.628 5.628 10 C 0.733 3.267 11 O -0.562 6.562 12 N -0.641 5.641 13 C 0.278 3.722 14 C -0.283 4.283 15 C 0.050 3.950 16 N -0.319 5.319 17 C 0.250 3.750 18 C -0.607 4.607 19 H 0.063 0.937 20 C 0.022 3.978 21 N -0.905 5.905 22 Si 1.077 2.923 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.285 1.285 26 N -0.306 5.306 27 C 0.158 3.842 28 H 0.077 0.923 29 C 0.061 3.939 30 H 0.024 0.976 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.029 0.971 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.406 0.594 42 H 0.162 0.838 43 H 0.167 0.833 44 H 0.046 0.954 45 H 0.034 0.966 46 H 0.267 0.733 47 H 0.103 0.897 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.179 21.667 18.649 28.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.279 5.279 3 C -0.071 4.071 4 C -0.142 4.142 5 C -0.131 4.131 6 H 0.102 0.898 7 C -0.158 4.158 8 C -0.026 4.026 9 N -0.367 5.367 10 C 0.435 3.565 11 O -0.437 6.437 12 N -0.291 5.291 13 C 0.024 3.976 14 C -0.314 4.314 15 C -0.100 4.100 16 N -0.101 5.101 17 C 0.132 3.868 18 C -0.645 4.645 19 H 0.081 0.919 20 C -0.182 4.182 21 N -0.541 5.541 22 Si 0.904 3.096 23 H -0.205 1.205 24 H -0.213 1.213 25 H -0.212 1.212 26 N -0.136 5.136 27 C 0.053 3.947 28 H 0.095 0.905 29 C -0.067 4.067 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.048 0.952 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.241 0.759 42 H 0.180 0.820 43 H 0.184 0.816 44 H 0.064 0.936 45 H 0.052 0.948 46 H 0.077 0.923 47 H 0.121 0.879 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.140 20.509 16.965 26.801 hybrid contribution -1.102 0.909 1.006 1.747 sum -4.242 21.418 17.971 28.278 Atomic orbital electron populations 1.22268 0.86350 1.02662 1.00273 1.61151 1.07942 1.12583 1.46189 1.22048 0.95174 0.89127 1.00721 1.21492 0.94562 1.00268 0.97868 1.22299 0.95581 0.95581 0.99680 0.89787 1.22477 0.96088 0.96222 1.00975 1.22518 0.84978 0.94233 1.00891 1.47143 1.16314 1.25863 1.47357 1.15106 0.83754 0.79163 0.78482 1.90834 1.19473 1.66142 1.67293 1.41389 1.17974 1.25521 1.44203 1.18783 0.93772 0.89026 0.96022 1.21514 0.99529 0.99692 1.10689 1.22551 0.91104 0.99973 0.96334 1.48755 1.09003 1.19905 1.32440 1.19740 0.96451 0.84015 0.86610 1.22101 1.48478 0.95783 0.98143 0.91889 1.25919 0.94272 0.95263 1.02778 1.70851 1.44205 1.09448 1.29548 0.83421 0.76581 0.75031 0.74596 1.20522 1.21256 1.21169 1.77341 1.18708 1.00715 1.16882 1.20927 0.92310 0.89040 0.92470 0.90504 1.21984 0.93666 0.99438 0.91571 0.95696 0.90974 0.91383 0.90586 0.95243 0.90431 0.90597 0.90035 0.89771 0.90868 0.91011 0.75901 0.82041 0.81555 0.93638 0.94839 0.92274 0.87855 0.94583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.61 60.07 0.58 0.84 16 2 N -0.55 -5.14 4.81 -243.38 -1.17 -6.31 16 3 C 0.06 0.41 5.42 -3.71 -0.02 0.39 16 4 C -0.10 -0.62 5.76 -26.85 -0.15 -0.77 16 5 C -0.11 -0.82 2.70 -89.71 -0.24 -1.06 16 6 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 7 C -0.12 -0.70 6.57 -25.16 -0.17 -0.86 16 8 C 0.10 0.77 6.32 -1.77 -0.01 0.76 16 9 N -0.63 -7.33 3.28 -169.61 -0.56 -7.89 16 10 C 0.73 11.53 8.41 -86.92 -0.73 10.80 16 11 O -0.56 -10.29 11.69 5.29 0.06 -10.23 16 12 N -0.64 -10.60 5.42 -15.51 -0.08 -10.68 16 13 C 0.28 5.78 8.11 -154.36 -1.25 4.53 16 14 C -0.28 -5.78 9.60 -39.84 -0.38 -6.17 16 15 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 16 N -0.32 -7.62 3.66 -62.56 -0.23 -7.85 16 17 C 0.25 6.42 5.57 -5.19 -0.03 6.39 16 18 C -0.61 -17.24 9.24 -34.44 -0.32 -17.56 16 19 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 20 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 21 N -0.91 -26.52 13.65 55.43 0.76 -25.77 16 22 Si 1.08 25.09 29.90 -169.99 -5.08 20.00 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 26 N -0.31 -7.24 12.43 31.44 0.39 -6.84 16 27 C 0.16 1.62 2.55 -68.47 -0.17 1.45 16 28 H 0.08 0.83 7.93 -51.93 -0.41 0.42 16 29 C 0.06 0.69 4.62 -4.35 -0.02 0.67 16 30 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 33 H 0.08 0.46 8.12 -51.93 -0.42 0.03 16 34 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.08 0.47 8.01 -51.93 -0.42 0.05 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.41 8.13 -51.93 -0.42 -0.01 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 41 H 0.41 5.65 7.84 -40.82 -0.32 5.33 16 42 H 0.16 3.22 5.91 -52.48 -0.31 2.91 16 43 H 0.17 2.79 8.06 -52.49 -0.42 2.36 16 44 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 45 H 0.03 0.89 8.01 -51.93 -0.42 0.48 16 46 H 0.27 7.66 7.22 -40.82 -0.29 7.36 16 47 H 0.10 1.44 6.62 -51.93 -0.34 1.09 16 48 H 0.04 0.44 8.14 -51.92 -0.42 0.02 16 LS Contribution 380.48 15.07 5.73 5.73 Total: -1.00 -33.77 380.48 -11.02 -44.79 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -7.62 Total: 4.27 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -3.22 Total: 0.77 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: -0.89 Total: -65.34 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.06 Total: -10.23 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.08 Total: 20.00 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.77 -11.02 -44.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272435600.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.849 kcal (2) G-P(sol) polarization free energy of solvation -33.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds