Wall clock time and date at job start Tue Mar 31 2020 18:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48688 * 111.00254 * 2 1 4 4 C 1.54747 * 104.64563 * 201.68562 * 3 2 1 5 5 C 1.52867 * 104.51021 * 23.65215 * 4 3 2 6 6 C 1.53721 * 111.73962 * 121.79468 * 5 4 3 7 7 C 1.54581 * 102.78183 * 86.54711 * 6 5 4 8 8 N 1.47127 * 107.33297 * 20.89459 * 7 6 5 9 9 C 1.34778 * 125.61100 * 180.93470 * 8 7 6 10 10 O 1.21593 * 120.00234 * 180.02562 * 9 8 7 11 11 N 1.34771 * 120.00052 * 0.02642 * 9 8 7 12 12 C 1.40200 * 120.00261 * 179.97438 * 11 9 8 13 13 C 1.40392 * 125.97205 * 359.97438 * 12 11 9 14 14 C 1.35242 * 107.87212 * 179.81179 * 13 12 11 15 15 N 1.34966 * 107.85201 * 0.36394 * 14 13 12 16 16 C 1.46506 * 125.97549 * 179.90231 * 15 14 13 17 17 C 1.50695 * 109.47276 * 124.71294 * 16 15 14 18 18 H 1.08002 * 119.99880 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99899 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99939 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00209 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47389 * 89.99608 * 21 19 17 23 23 H 1.48504 * 109.47442 * 210.00000 * 21 19 17 24 24 H 1.48508 * 109.47065 * 329.99866 * 21 19 17 25 25 N 1.31207 * 125.96886 * 180.02562 * 12 11 9 26 26 C 1.47708 * 108.78513 * 1.19903 * 8 7 6 27 27 C 1.48903 * 110.99459 * 244.29963 * 2 1 3 28 28 H 1.08997 * 109.47579 * 59.86548 * 1 2 3 29 29 H 1.08994 * 109.47381 * 179.87426 * 1 2 3 30 30 H 1.09003 * 109.46817 * 299.87289 * 1 2 3 31 31 H 1.08996 * 110.40414 * 82.89249 * 3 2 1 32 32 H 1.09003 * 110.50213 * 320.52046 * 3 2 1 33 33 H 1.09006 * 110.42369 * 264.89635 * 4 3 2 34 34 H 1.08999 * 110.42850 * 142.41262 * 4 3 2 35 35 H 1.09009 * 110.74531 * 328.22628 * 6 5 4 36 36 H 1.08995 * 110.90916 * 204.94810 * 6 5 4 37 37 H 1.09001 * 109.87554 * 261.45571 * 7 6 5 38 38 H 1.09000 * 109.98681 * 140.39633 * 7 6 5 39 39 H 0.97002 * 119.99824 * 359.97438 * 11 9 8 40 40 H 1.08002 * 126.06479 * 0.05583 * 13 12 11 41 41 H 1.07990 * 126.07596 * 180.26058 * 14 13 12 42 42 H 1.08997 * 109.47120 * 244.71769 * 16 15 14 43 43 H 1.08998 * 109.46787 * 4.71285 * 16 15 14 44 44 H 0.97000 * 120.00034 * 180.02562 * 20 19 17 45 45 H 1.08998 * 110.39001 * 95.92668 * 26 8 7 46 46 H 1.08995 * 110.39591 * 218.31453 * 26 8 7 47 47 H 1.09000 * 110.47987 * 39.15406 * 27 2 1 48 48 H 1.09003 * 110.47745 * 276.53883 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0019 1.3881 0.0000 4 6 3.4409 1.2547 -0.5532 5 6 3.4195 -0.0382 -1.3685 6 6 3.8155 0.2059 -2.8336 7 6 5.3574 0.1045 -2.7926 8 7 5.7151 -0.6493 -1.5808 9 6 6.9683 -0.9362 -1.1763 10 8 7.1472 -1.5691 -0.1536 11 7 8.0232 -0.5216 -1.9054 12 6 9.3269 -0.8196 -1.4844 13 6 9.6768 -1.5374 -0.3298 14 6 11.0262 -1.6136 -0.2814 15 7 11.5162 -0.9631 -1.3576 16 6 12.9329 -0.8008 -1.6938 17 6 13.1816 -1.3209 -3.0861 18 1 12.3661 -1.7318 -3.6628 19 6 14.4503 -1.2723 -3.6237 20 7 14.6672 -1.7258 -4.8390 21 14 15.8609 -0.5624 -2.6261 22 1 16.5047 -1.6448 -1.8393 23 1 16.8594 0.0443 -3.5427 24 1 15.3401 0.4778 -1.7030 25 7 10.4332 -0.4754 -2.1002 26 6 4.4746 -1.0454 -0.8837 27 6 2.0024 -0.6029 -1.2527 28 1 -0.3634 0.5159 -0.8887 29 1 -0.3634 -1.0276 -0.0023 30 1 -0.3633 0.5119 0.8912 31 1 2.0201 1.7882 1.0137 32 1 1.4030 2.0270 -0.6491 33 1 4.1572 1.1769 0.2647 34 1 3.6829 2.1037 -1.1926 35 1 3.5022 1.1984 -3.1581 36 1 3.3951 -0.5617 -3.4833 37 1 5.7935 1.1026 -2.7503 38 1 5.7199 -0.4208 -3.6762 39 1 7.8805 -0.0170 -2.7215 40 1 8.9900 -1.9580 0.3899 41 1 11.6083 -2.1059 0.4835 42 1 13.1986 0.2553 -1.6476 43 1 13.5413 -1.3599 -0.9830 44 1 15.5599 -1.6920 -5.2171 45 1 4.1904 -2.0604 -1.1614 46 1 4.6043 -0.9684 0.1958 47 1 1.3998 -0.2994 -2.1087 48 1 2.0305 -1.6895 -1.1710 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000333502598.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:26 Heat of formation + Delta-G solvation = 80.243995 kcal Electronic energy + Delta-G solvation = -28312.409207 eV Core-core repulsion = 24404.872437 eV Total energy + Delta-G solvation = -3907.536769 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.09870 -40.44442 -39.16996 -36.86892 -34.71937 -33.35853 -32.70022 -31.15564 -30.40964 -29.62946 -29.30829 -27.37727 -26.65031 -24.87846 -23.32546 -22.57522 -21.69030 -21.28085 -20.18081 -19.75186 -19.24111 -17.87199 -17.02579 -16.59522 -16.35862 -16.07369 -15.67764 -15.56565 -14.86553 -14.74411 -14.66391 -14.36857 -14.09309 -13.60024 -13.58038 -13.29620 -13.11709 -13.03520 -12.53509 -12.50153 -12.45745 -12.23742 -12.13060 -12.05331 -11.90083 -11.73405 -11.24253 -11.13890 -11.04516 -10.90202 -10.75734 -10.61315 -10.06563 -9.97084 -9.71428 -9.49311 -8.95620 -8.80410 -8.74387 -8.12327 -7.42789 -6.21495 -4.23457 2.29439 2.63178 3.09230 3.16855 3.23862 3.24585 3.40722 3.53096 3.82526 3.96954 4.00379 4.14685 4.23296 4.25112 4.48218 4.70383 4.76343 4.82643 4.93322 4.94493 5.06496 5.12930 5.22911 5.27424 5.30665 5.37900 5.39766 5.43240 5.46060 5.48563 5.60083 5.66872 5.74416 5.75461 5.81473 5.95497 6.27920 6.34527 6.41574 6.50925 6.52497 6.64621 6.76579 6.98967 7.30686 7.47761 7.85685 7.89987 8.36574 8.60188 8.63848 8.88769 9.33696 10.91247 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.033493 B = 0.001998 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.788311 B =14008.550741 C =14332.950894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.516 5.516 3 C 0.032 3.968 4 C -0.109 4.109 5 C -0.078 4.078 6 C -0.117 4.117 7 C 0.095 3.905 8 N -0.635 5.635 9 C 0.732 3.268 10 O -0.565 6.565 11 N -0.641 5.641 12 C 0.280 3.720 13 C -0.282 4.282 14 C 0.051 3.949 15 N -0.321 5.321 16 C 0.232 3.768 17 C -0.533 4.533 18 H 0.085 0.915 19 C 0.075 3.925 20 N -0.888 5.888 21 Si 0.873 3.127 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.264 1.264 25 N -0.301 5.301 26 C 0.148 3.852 27 C 0.048 3.952 28 H 0.028 0.972 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.406 0.594 40 H 0.163 0.837 41 H 0.169 0.831 42 H 0.041 0.959 43 H 0.049 0.951 44 H 0.268 0.732 45 H 0.068 0.932 46 H 0.085 0.915 47 H 0.052 0.948 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.015 6.097 7.253 29.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.240 5.240 3 C -0.096 4.096 4 C -0.147 4.147 5 C -0.079 4.079 6 C -0.155 4.155 7 C -0.028 4.028 8 N -0.375 5.375 9 C 0.433 3.567 10 O -0.440 6.440 11 N -0.291 5.291 12 C 0.025 3.975 13 C -0.313 4.313 14 C -0.098 4.098 15 N -0.103 5.103 16 C 0.113 3.887 17 C -0.571 4.571 18 H 0.103 0.897 19 C -0.128 4.128 20 N -0.526 5.526 21 Si 0.699 3.301 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.189 1.189 25 N -0.132 5.132 26 C 0.025 3.975 27 C -0.080 4.080 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.241 0.759 40 H 0.180 0.820 41 H 0.186 0.814 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.104 0.896 47 H 0.070 0.930 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -26.870 5.901 7.342 28.473 hybrid contribution 0.165 0.625 -0.290 0.708 sum -26.705 6.526 7.052 28.381 Atomic orbital electron populations 1.22511 0.87870 1.02330 1.00829 1.65449 1.08220 1.15379 1.34915 1.23240 0.95106 0.89928 1.01362 1.22230 0.96762 0.96080 0.99664 1.21542 0.94789 0.96142 0.95452 1.22578 0.94111 1.03161 0.95637 1.22107 0.96012 0.96577 0.88092 1.47573 1.03968 1.59104 1.26859 1.15085 0.78849 0.79866 0.82862 1.90872 1.83315 1.44562 1.25243 1.41391 1.01747 1.58237 1.27765 1.18787 0.83970 0.99884 0.94842 1.21538 0.94245 1.12840 1.02714 1.22543 0.94734 0.99227 0.93341 1.48583 1.06423 1.39347 1.15929 1.20028 0.71526 0.98276 0.98827 1.21120 0.96659 1.41817 0.97548 0.89656 1.24837 0.98314 0.94706 0.94957 1.69876 1.22342 1.45572 1.14783 0.86903 0.82640 0.80016 0.80517 1.19724 1.20568 1.18860 1.77380 0.91589 1.25343 1.18846 1.22001 0.80700 0.96683 0.98114 1.22955 0.93155 1.00596 0.91293 0.95383 0.91114 0.91225 0.89952 0.93760 0.90234 0.90749 0.89735 0.90036 0.91320 0.91119 0.75853 0.82010 0.81419 0.94083 0.93349 0.92221 0.91360 0.89647 0.92984 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.52 60.06 0.57 0.64 16 2 N -0.52 -3.62 5.66 -238.48 -1.35 -4.97 16 3 C 0.03 0.20 6.54 -1.91 -0.01 0.19 16 4 C -0.11 -0.75 6.27 -25.88 -0.16 -0.91 16 5 C -0.08 -0.53 0.81 -153.84 -0.12 -0.65 16 6 C -0.12 -0.65 5.75 -25.53 -0.15 -0.80 16 7 C 0.10 0.75 6.10 -2.87 -0.02 0.73 16 8 N -0.64 -7.23 3.34 -176.51 -0.59 -7.82 16 9 C 0.73 11.58 8.46 -86.92 -0.74 10.85 16 10 O -0.56 -10.73 13.75 5.28 0.07 -10.65 16 11 N -0.64 -10.62 5.41 -15.51 -0.08 -10.70 16 12 C 0.28 5.78 8.11 -154.36 -1.25 4.53 16 13 C -0.28 -5.71 9.60 -39.84 -0.38 -6.09 16 14 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 15 N -0.32 -7.42 3.67 -62.56 -0.23 -7.65 16 16 C 0.23 5.58 5.33 -5.19 -0.03 5.55 16 17 C -0.53 -15.19 9.79 -34.44 -0.34 -15.53 16 18 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 19 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 20 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 21 Si 0.87 20.27 27.47 -169.99 -4.67 15.60 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 25 N -0.30 -7.05 12.42 31.44 0.39 -6.66 16 26 C 0.15 1.43 5.79 -3.01 -0.02 1.41 16 27 C 0.05 0.30 5.66 -2.72 -0.02 0.28 16 28 H 0.03 0.13 7.98 -51.93 -0.41 -0.28 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.25 7.96 -51.93 -0.41 -0.17 16 33 H 0.08 0.68 7.56 -51.93 -0.39 0.28 16 34 H 0.07 0.44 7.51 -51.93 -0.39 0.05 16 35 H 0.08 0.37 7.71 -51.92 -0.40 -0.03 16 36 H 0.08 0.40 8.05 -51.93 -0.42 -0.02 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.41 5.67 7.81 -40.82 -0.32 5.35 16 40 H 0.16 3.23 5.91 -52.49 -0.31 2.92 16 41 H 0.17 2.63 8.06 -52.49 -0.42 2.21 16 42 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 43 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 44 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.07 0.64 7.75 -51.93 -0.40 0.24 16 46 H 0.09 0.97 7.69 -51.93 -0.40 0.57 16 47 H 0.05 0.27 7.69 -51.93 -0.40 -0.13 16 48 H 0.09 0.54 7.60 -51.93 -0.39 0.15 16 LS Contribution 382.09 15.07 5.76 5.76 Total: -1.00 -34.84 382.09 -10.42 -45.26 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -7.54 Total: 4.76 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -2.95 Total: 3.06 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: -1.09 Total: -63.79 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.07 Total: -10.65 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.67 Total: 15.60 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.84 -10.42 -45.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333502598.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.505 kcal (2) G-P(sol) polarization free energy of solvation -34.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds