Wall clock time and date at job start Tue Mar 31 2020 18:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48688 * 111.00254 * 2 1 4 4 C 1.54747 * 104.64563 * 201.68562 * 3 2 1 5 5 C 1.52867 * 104.51021 * 23.65215 * 4 3 2 6 6 C 1.53721 * 111.73962 * 121.79468 * 5 4 3 7 7 C 1.54581 * 102.78183 * 86.54711 * 6 5 4 8 8 N 1.47127 * 107.33297 * 20.89459 * 7 6 5 9 9 C 1.34778 * 125.61100 * 180.93470 * 8 7 6 10 10 O 1.21593 * 120.00234 * 180.02562 * 9 8 7 11 11 N 1.34771 * 120.00052 * 0.02642 * 9 8 7 12 12 C 1.40200 * 120.00261 * 179.97438 * 11 9 8 13 13 C 1.40392 * 125.97205 * 359.97438 * 12 11 9 14 14 C 1.35242 * 107.87212 * 179.81179 * 13 12 11 15 15 N 1.34966 * 107.85201 * 0.36394 * 14 13 12 16 16 C 1.46506 * 125.97549 * 179.90231 * 15 14 13 17 17 C 1.50695 * 109.47276 * 124.71294 * 16 15 14 18 18 H 1.08002 * 119.99880 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99899 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99939 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00209 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47389 * 89.99608 * 21 19 17 23 23 H 1.48504 * 109.47442 * 210.00000 * 21 19 17 24 24 H 1.48508 * 109.47065 * 329.99866 * 21 19 17 25 25 N 1.31207 * 125.96886 * 180.02562 * 12 11 9 26 26 C 1.47708 * 108.78513 * 1.19903 * 8 7 6 27 27 C 1.48903 * 110.99459 * 244.29963 * 2 1 3 28 28 H 1.08997 * 109.47579 * 59.86548 * 1 2 3 29 29 H 1.08994 * 109.47381 * 179.87426 * 1 2 3 30 30 H 1.09003 * 109.46817 * 299.87289 * 1 2 3 31 31 H 1.08996 * 110.40414 * 82.89249 * 3 2 1 32 32 H 1.09003 * 110.50213 * 320.52046 * 3 2 1 33 33 H 1.09006 * 110.42369 * 264.89635 * 4 3 2 34 34 H 1.08999 * 110.42850 * 142.41262 * 4 3 2 35 35 H 1.09009 * 110.74531 * 328.22628 * 6 5 4 36 36 H 1.08995 * 110.90916 * 204.94810 * 6 5 4 37 37 H 1.09001 * 109.87554 * 261.45571 * 7 6 5 38 38 H 1.09000 * 109.98681 * 140.39633 * 7 6 5 39 39 H 0.97002 * 119.99824 * 359.97438 * 11 9 8 40 40 H 1.08002 * 126.06479 * 0.05583 * 13 12 11 41 41 H 1.07990 * 126.07596 * 180.26058 * 14 13 12 42 42 H 1.08997 * 109.47120 * 244.71769 * 16 15 14 43 43 H 1.08998 * 109.46787 * 4.71285 * 16 15 14 44 44 H 0.97000 * 120.00034 * 180.02562 * 20 19 17 45 45 H 1.08998 * 110.39001 * 95.92668 * 26 8 7 46 46 H 1.08995 * 110.39591 * 218.31453 * 26 8 7 47 47 H 1.09000 * 110.47987 * 39.15406 * 27 2 1 48 48 H 1.09003 * 110.47745 * 276.53883 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0019 1.3881 0.0000 4 6 3.4409 1.2547 -0.5532 5 6 3.4195 -0.0382 -1.3685 6 6 3.8155 0.2059 -2.8336 7 6 5.3574 0.1045 -2.7926 8 7 5.7151 -0.6493 -1.5808 9 6 6.9683 -0.9362 -1.1763 10 8 7.1472 -1.5691 -0.1536 11 7 8.0232 -0.5216 -1.9054 12 6 9.3269 -0.8196 -1.4844 13 6 9.6768 -1.5374 -0.3298 14 6 11.0262 -1.6136 -0.2814 15 7 11.5162 -0.9631 -1.3576 16 6 12.9329 -0.8008 -1.6938 17 6 13.1816 -1.3209 -3.0861 18 1 12.3661 -1.7318 -3.6628 19 6 14.4503 -1.2723 -3.6237 20 7 14.6672 -1.7258 -4.8390 21 14 15.8609 -0.5624 -2.6261 22 1 16.5047 -1.6448 -1.8393 23 1 16.8594 0.0443 -3.5427 24 1 15.3401 0.4778 -1.7030 25 7 10.4332 -0.4754 -2.1002 26 6 4.4746 -1.0454 -0.8837 27 6 2.0024 -0.6029 -1.2527 28 1 -0.3634 0.5159 -0.8887 29 1 -0.3634 -1.0276 -0.0023 30 1 -0.3633 0.5119 0.8912 31 1 2.0201 1.7882 1.0137 32 1 1.4030 2.0270 -0.6491 33 1 4.1572 1.1769 0.2647 34 1 3.6829 2.1037 -1.1926 35 1 3.5022 1.1984 -3.1581 36 1 3.3951 -0.5617 -3.4833 37 1 5.7935 1.1026 -2.7503 38 1 5.7199 -0.4208 -3.6762 39 1 7.8805 -0.0170 -2.7215 40 1 8.9900 -1.9580 0.3899 41 1 11.6083 -2.1059 0.4835 42 1 13.1986 0.2553 -1.6476 43 1 13.5413 -1.3599 -0.9830 44 1 15.5599 -1.6920 -5.2171 45 1 4.1904 -2.0604 -1.1614 46 1 4.6043 -0.9684 0.1958 47 1 1.3998 -0.2994 -2.1087 48 1 2.0305 -1.6895 -1.1710 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000333502598.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:26 Heat of formation + Delta-G solvation = 55.210060 kcal Electronic energy + Delta-G solvation = -28313.494759 eV Core-core repulsion = 24404.872437 eV Total energy + Delta-G solvation = -3908.622322 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.32101 -41.58784 -40.24236 -37.64854 -36.23612 -35.21267 -33.71238 -32.80021 -31.05926 -30.97228 -30.21016 -29.02482 -27.48666 -25.68745 -24.45543 -23.91506 -22.68516 -22.16474 -21.76030 -20.69632 -20.27347 -19.09416 -18.98960 -18.06636 -17.34349 -17.09446 -16.66936 -16.43536 -16.30525 -15.98723 -15.60635 -15.27382 -15.09587 -14.88594 -14.79367 -14.40176 -14.24777 -14.01222 -13.84107 -13.82669 -13.68462 -13.14810 -13.03457 -12.94436 -12.65180 -12.52462 -12.37475 -12.32411 -12.25990 -11.82937 -11.78224 -11.64585 -11.59731 -11.49133 -11.43872 -11.13739 -10.86207 -9.88251 -9.68754 -9.40263 -9.02937 -8.36799 -6.46983 1.00367 1.08074 1.37329 1.40386 1.50135 1.66328 2.00176 2.29699 2.36451 2.85127 2.95817 3.07496 3.38840 3.49576 3.59972 3.90942 3.95787 4.17331 4.19954 4.23093 4.30432 4.46138 4.51147 4.59615 4.61090 4.62572 4.70512 4.73282 4.77110 4.83428 4.84700 4.88305 4.92537 4.93633 5.00448 5.04593 5.06413 5.09866 5.20359 5.24983 5.27558 5.37772 5.79753 5.88517 5.91309 6.01806 6.08855 6.41618 6.56544 6.62865 7.06654 7.15953 7.34871 8.80298 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.033493 B = 0.001998 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.788311 B =14008.550741 C =14332.950894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.538 5.538 3 C 0.035 3.965 4 C -0.109 4.109 5 C -0.069 4.069 6 C -0.105 4.105 7 C 0.085 3.915 8 N -0.627 5.627 9 C 0.727 3.273 10 O -0.601 6.601 11 N -0.636 5.636 12 C 0.284 3.716 13 C -0.295 4.295 14 C 0.063 3.937 15 N -0.344 5.344 16 C 0.239 3.761 17 C -0.547 4.547 18 H 0.026 0.974 19 C 0.014 3.986 20 N -0.942 5.942 21 Si 0.956 3.044 22 H -0.253 1.253 23 H -0.281 1.281 24 H -0.239 1.239 25 N -0.349 5.349 26 C 0.144 3.856 27 C 0.052 3.948 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.417 0.583 40 H 0.165 0.835 41 H 0.212 0.788 42 H 0.046 0.954 43 H 0.082 0.918 44 H 0.272 0.728 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.070 0.930 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.753 7.265 8.257 30.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.262 5.262 3 C -0.093 4.093 4 C -0.147 4.147 5 C -0.070 4.070 6 C -0.143 4.143 7 C -0.037 4.037 8 N -0.365 5.365 9 C 0.428 3.572 10 O -0.480 6.480 11 N -0.288 5.288 12 C 0.029 3.971 13 C -0.326 4.326 14 C -0.085 4.085 15 N -0.126 5.126 16 C 0.120 3.880 17 C -0.585 4.585 18 H 0.044 0.956 19 C -0.185 4.185 20 N -0.581 5.581 21 Si 0.777 3.223 22 H -0.178 1.178 23 H -0.206 1.206 24 H -0.162 1.162 25 N -0.179 5.179 26 C 0.022 3.978 27 C -0.076 4.076 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.126 0.874 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.254 0.746 40 H 0.183 0.817 41 H 0.228 0.772 42 H 0.064 0.936 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -27.695 7.086 8.330 29.776 hybrid contribution 0.198 0.202 -0.638 0.697 sum -27.498 7.288 7.692 29.469 Atomic orbital electron populations 1.22522 0.86897 1.02663 1.01348 1.65433 1.09324 1.15846 1.35642 1.23210 0.94753 0.89924 1.01413 1.22211 0.96705 0.96569 0.99186 1.21471 0.94252 0.95161 0.96146 1.22602 0.91843 1.05051 0.94772 1.22428 0.98140 0.96546 0.86548 1.47631 1.02779 1.58238 1.27860 1.15268 0.79795 0.79690 0.82448 1.90828 1.84134 1.46222 1.26788 1.41400 1.00672 1.58380 1.28301 1.19114 0.84842 0.98661 0.94518 1.21711 0.94742 1.13299 1.02844 1.23229 0.94954 0.97506 0.92830 1.48502 1.06062 1.40951 1.17115 1.19894 0.72835 0.98602 0.96692 1.21232 0.95436 1.42160 0.99659 0.95588 1.25928 1.01693 0.94726 0.96148 1.70053 1.23488 1.47297 1.17252 0.85606 0.77760 0.80012 0.78934 1.17768 1.20597 1.16243 1.77298 0.92547 1.27546 1.20558 1.22148 0.80800 0.97992 0.96881 1.22940 0.92572 1.00431 0.91671 0.94441 0.90910 0.91105 0.90439 0.92398 0.92549 0.89424 0.87419 0.88619 0.90419 0.90539 0.74593 0.81750 0.77156 0.93612 0.90008 0.91893 0.91063 0.91890 0.91225 0.89645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.52 127.69 1.22 1.34 16 2 N -0.54 -6.77 5.66 -908.41 -5.14 -11.91 16 3 C 0.03 0.38 6.54 86.55 0.57 0.95 16 4 C -0.11 -1.34 6.27 31.15 0.20 -1.15 16 5 C -0.07 -0.82 0.81 -51.75 -0.04 -0.86 16 6 C -0.10 -0.87 5.75 31.38 0.18 -0.69 16 7 C 0.09 1.21 6.10 86.80 0.53 1.74 16 8 N -0.63 -14.08 3.34 -830.63 -2.77 -16.86 16 9 C 0.73 23.33 8.46 179.06 1.51 24.85 16 10 O -0.60 -23.42 13.75 -4.01 -0.06 -23.48 16 11 N -0.64 -21.39 5.41 -321.24 -1.74 -23.13 16 12 C 0.28 11.97 8.11 133.31 1.08 13.05 16 13 C -0.29 -11.93 9.60 22.10 0.21 -11.72 16 14 C 0.06 2.41 11.44 83.52 0.96 3.37 16 15 N -0.34 -15.85 3.67 -351.85 -1.29 -17.15 16 16 C 0.24 11.26 5.33 85.63 0.46 11.71 16 17 C -0.55 -31.92 9.79 25.60 0.25 -31.67 16 18 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 19 C 0.01 0.79 5.47 84.65 0.46 1.25 16 20 N -0.94 -58.36 13.96 21.45 0.30 -58.06 16 21 Si 0.96 40.98 27.47 68.60 1.88 42.87 16 22 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 23 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.24 -9.26 6.54 99.48 0.65 -8.60 16 25 N -0.35 -16.72 12.42 -54.44 -0.68 -17.40 16 26 C 0.14 2.75 5.79 86.39 0.50 3.25 16 27 C 0.05 0.53 5.66 85.91 0.49 1.02 16 28 H 0.04 0.26 7.98 -2.39 -0.02 0.25 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.49 7.96 -2.39 -0.02 0.47 16 33 H 0.06 0.97 7.56 -2.38 -0.02 0.95 16 34 H 0.09 0.84 7.51 -2.39 -0.02 0.83 16 35 H 0.11 0.49 7.71 -2.38 -0.02 0.47 16 36 H 0.10 0.59 8.05 -2.39 -0.02 0.57 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.42 11.77 7.81 -92.71 -0.72 11.05 16 40 H 0.17 6.60 5.91 -2.91 -0.02 6.58 16 41 H 0.21 5.96 8.06 -2.92 -0.02 5.93 16 42 H 0.05 2.10 7.20 -2.39 -0.02 2.08 16 43 H 0.08 3.30 7.50 -2.39 -0.02 3.28 16 44 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 45 H 0.07 1.32 7.75 -2.39 -0.02 1.30 16 46 H 0.06 1.49 7.69 -2.39 -0.02 1.48 16 47 H 0.07 0.50 7.69 -2.39 -0.02 0.48 16 48 H 0.09 0.92 7.60 -2.39 -0.02 0.91 16 Total: -1.00 -80.03 382.09 -0.74 -80.77 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: 0.19 Total: 27.91 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 8.56 Total: 16.45 kcal Atomic # 7 Polarization: -133.19 SS G_CDS: -11.32 Total: -144.51 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.06 Total: -23.48 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 1.88 Total: 42.87 kcal Total: -80.03 -0.74 -80.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333502598.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.976 kcal (2) G-P(sol) polarization free energy of solvation -80.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds