Wall clock time and date at job start Tue Mar 31 2020 18:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35966 * 126.07180 * 2 1 4 4 C 1.35705 * 107.55227 * 180.10360 * 3 2 1 5 5 N 1.40795 * 126.06797 * 179.89510 * 4 3 2 6 6 C 1.46902 * 110.99934 * 179.71363 * 5 4 3 7 7 C 1.53239 * 109.36076 * 172.76404 * 6 5 4 8 8 N 1.47080 * 108.52112 * 53.81819 * 7 6 5 9 9 C 1.34780 * 120.88084 * 128.79652 * 8 7 6 10 10 O 1.21587 * 119.99936 * 354.54981 * 9 8 7 11 11 N 1.34779 * 119.99693 * 174.55660 * 9 8 7 12 12 C 1.46503 * 119.99485 * 184.95273 * 11 9 8 13 13 C 1.52998 * 109.47183 * 185.02033 * 12 11 9 14 14 C 1.50704 * 115.54936 * 281.34674 * 13 12 11 15 15 H 1.07995 * 119.99820 * 147.06999 * 14 13 12 16 16 C 1.37878 * 120.00157 * 327.07029 * 14 13 12 17 17 N 1.31505 * 119.99980 * 163.96542 * 16 14 13 18 18 Si 1.86801 * 119.99594 * 343.96585 * 16 14 13 19 19 H 1.48503 * 109.47012 * 95.95486 * 18 16 14 20 20 H 1.48501 * 109.46803 * 215.94973 * 18 16 14 21 21 H 1.48500 * 109.47459 * 335.95230 * 18 16 14 22 22 C 1.52998 * 117.49946 * 135.63604 * 13 12 11 23 23 C 1.52998 * 117.49830 * 67.01070 * 13 12 11 24 24 C 1.47075 * 118.23873 * 308.81188 * 8 7 6 25 25 C 1.46898 * 111.01990 * 55.39904 * 5 4 3 26 26 C 1.40227 * 107.86273 * 359.63815 * 4 3 2 27 27 N 1.30864 * 108.36329 * 0.22549 * 26 4 3 28 28 H 1.08999 * 109.46821 * 270.28444 * 1 2 3 29 29 H 1.08998 * 109.47090 * 30.28134 * 1 2 3 30 30 H 1.08994 * 109.47189 * 150.28555 * 1 2 3 31 31 H 1.07997 * 126.22574 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.48973 * 52.79298 * 6 5 4 33 33 H 1.08996 * 109.49217 * 292.73623 * 6 5 4 34 34 H 1.08999 * 109.63067 * 173.52998 * 7 6 5 35 35 H 1.09005 * 109.63027 * 294.11101 * 7 6 5 36 36 H 0.96997 * 120.00361 * 4.94830 * 11 9 8 37 37 H 1.09001 * 109.47027 * 305.02195 * 12 11 9 38 38 H 1.09005 * 109.47274 * 65.01966 * 12 11 9 39 39 H 0.97004 * 120.00051 * 180.02562 * 17 16 14 40 40 H 1.09000 * 117.49975 * 359.97438 * 22 13 12 41 41 H 1.09002 * 117.49865 * 145.02942 * 22 13 12 42 42 H 1.08995 * 117.50111 * 214.98224 * 23 13 12 43 43 H 1.09004 * 117.49668 * 359.97438 * 23 13 12 44 44 H 1.08998 * 109.63052 * 170.89146 * 24 8 7 45 45 H 1.09004 * 109.63104 * 291.28407 * 24 8 7 46 46 H 1.09000 * 109.46880 * 67.26225 * 25 5 4 47 47 H 1.09002 * 109.51209 * 307.21812 * 25 5 4 48 48 H 1.08001 * 125.81378 * 180.22597 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2656 1.0990 0.0000 4 6 3.5524 0.6680 -0.0023 5 7 4.6999 1.4838 -0.0052 6 6 5.9236 0.6711 -0.0003 7 6 7.1404 1.5840 -0.1857 8 7 7.0916 2.6408 0.8360 9 6 8.1598 2.8981 1.6167 10 8 9.1458 2.1898 1.5505 11 7 8.1348 3.9404 2.4708 12 6 9.3328 4.2860 3.2399 13 6 9.0034 5.4168 4.2164 14 6 8.9468 6.7980 3.6162 15 1 8.2578 7.5302 4.0104 16 6 9.7748 7.1268 2.5639 17 7 9.5231 8.1940 1.8378 18 14 11.2540 6.0563 2.1696 19 1 10.8960 5.0928 1.0978 20 1 12.3766 6.9131 1.7102 21 1 11.6652 5.3122 3.3871 22 6 9.5276 5.2891 5.6481 23 6 8.0365 5.1034 5.3600 24 6 5.8463 3.4092 0.9835 25 6 4.6804 2.4245 1.1229 26 6 3.5364 -0.7342 0.0046 27 7 2.2897 -1.1322 0.0060 28 1 -0.3633 0.0051 1.0277 29 1 -0.3633 0.8874 -0.5182 30 1 -0.3633 -0.8925 -0.5094 31 1 1.9372 2.1278 -0.0004 32 1 5.8835 -0.0515 -0.8153 33 1 6.0061 0.1436 0.9499 34 1 8.0552 1.0031 -0.0683 35 1 7.1134 2.0331 -1.1786 36 1 7.3236 4.4618 2.5762 37 1 9.6716 3.4123 3.7967 38 1 10.1201 4.6111 2.5597 39 1 10.1054 8.4252 1.0972 40 1 10.1069 4.3992 5.8944 41 1 9.8318 6.2042 6.1562 42 1 7.3598 5.8963 5.6785 43 1 7.6347 4.0917 5.4164 44 1 5.9054 4.0349 1.8740 45 1 5.6966 4.0363 0.1046 46 1 4.7800 1.8728 2.0577 47 1 3.7387 2.9733 1.1230 48 1 4.4049 -1.3762 0.0082 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366755069.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:53 Heat of formation + Delta-G solvation = 119.466488 kcal Electronic energy + Delta-G solvation = -29143.018414 eV Core-core repulsion = 25237.182460 eV Total energy + Delta-G solvation = -3905.835954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.53409 -40.06472 -38.16377 -37.00455 -34.65813 -33.51473 -32.98870 -32.29308 -31.26659 -29.87967 -27.91009 -26.80015 -25.74902 -24.91395 -23.87167 -22.01613 -21.46854 -20.89974 -20.45447 -19.52868 -19.02737 -18.24572 -17.34509 -16.48458 -15.96361 -15.76853 -15.65485 -15.28423 -15.20852 -15.04342 -14.56530 -14.49827 -14.13541 -13.95154 -13.44960 -13.29210 -13.18851 -12.98035 -12.87547 -12.80305 -12.40313 -12.23719 -12.03657 -11.64362 -11.40998 -11.24994 -11.04498 -10.96803 -10.63614 -10.46549 -10.08967 -9.95245 -9.78874 -9.65468 -9.46651 -9.37956 -9.01070 -8.59070 -8.40989 -8.04635 -7.77923 -6.25418 -4.17666 1.56713 2.18328 2.46982 2.91656 3.30344 3.40502 3.42496 3.58780 3.69598 4.23147 4.31890 4.33248 4.52936 4.73479 4.77267 4.79133 4.81568 4.91518 4.99182 5.02615 5.14733 5.23924 5.31585 5.32911 5.41420 5.49276 5.54933 5.64146 5.74247 5.81967 5.88207 6.00200 6.05988 6.13448 6.20622 6.40790 6.45967 6.57793 6.63933 6.67509 6.78952 6.85605 7.04939 7.06270 7.15944 7.31570 7.39800 7.64453 8.37808 8.42621 8.80202 9.02617 9.40625 10.85639 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019090 B = 0.002737 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.357711 B =10225.856901 C =10539.757850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.378 5.378 3 C 0.033 3.967 4 C -0.040 4.040 5 N -0.459 5.459 6 C 0.043 3.957 7 C 0.135 3.865 8 N -0.635 5.635 9 C 0.705 3.295 10 O -0.601 6.601 11 N -0.721 5.721 12 C 0.167 3.833 13 C -0.005 4.005 14 C -0.491 4.491 15 H 0.079 0.921 16 C 0.083 3.917 17 N -0.881 5.881 18 Si 0.886 3.114 19 H -0.277 1.277 20 H -0.299 1.299 21 H -0.264 1.264 22 C -0.200 4.200 23 C -0.188 4.188 24 C 0.115 3.885 25 C 0.046 3.954 26 C 0.023 3.977 27 N -0.285 5.285 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.176 0.824 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.401 0.599 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.267 0.733 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.044 0.956 47 H 0.087 0.913 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.072 -14.245 -4.257 22.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.163 5.163 3 C -0.113 4.113 4 C -0.146 4.146 5 N -0.178 5.178 6 C -0.085 4.085 7 C 0.012 3.988 8 N -0.374 5.374 9 C 0.407 3.593 10 O -0.480 6.480 11 N -0.376 5.376 12 C 0.044 3.956 13 C -0.006 4.006 14 C -0.528 4.528 15 H 0.097 0.903 16 C -0.122 4.122 17 N -0.516 5.516 18 Si 0.718 3.282 19 H -0.205 1.205 20 H -0.227 1.227 21 H -0.189 1.189 22 C -0.238 4.238 23 C -0.226 4.226 24 C -0.009 4.009 25 C -0.081 4.081 26 C -0.164 4.164 27 N -0.107 5.107 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.193 0.807 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.238 0.762 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.107 0.893 45 H 0.097 0.903 46 H 0.063 0.937 47 H 0.105 0.895 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -17.172 -15.275 -4.871 23.493 hybrid contribution 0.894 0.130 0.439 1.004 sum -16.278 -15.145 -4.431 22.671 Atomic orbital electron populations 1.21818 0.73883 1.04451 1.03305 1.48421 1.06430 1.03428 1.58069 1.22041 0.89818 0.93259 1.06186 1.19005 0.90898 0.91056 1.13629 1.59444 0.99741 1.16979 1.41612 1.22599 0.88776 0.95439 1.01664 1.21502 0.97884 0.88622 0.90822 1.47238 1.12826 1.38855 1.38508 1.15892 0.82717 0.81577 0.79129 1.90856 1.33349 1.51502 1.72294 1.45207 1.16575 1.31683 1.44169 1.21178 0.85737 0.95943 0.92788 1.19545 0.99870 0.95019 0.86200 1.20273 1.22501 0.94286 1.15723 0.90268 1.24966 0.97295 0.95154 0.94787 1.69934 1.37162 1.26967 1.17554 0.86877 0.82667 0.79269 0.79374 1.20483 1.22737 1.18915 1.23133 0.95677 1.01267 1.03729 1.22776 0.92653 1.00143 1.06983 1.21723 0.82680 0.93352 1.03119 1.22633 0.99405 0.94525 0.91577 1.23989 0.95511 0.94273 1.02676 1.77270 1.01339 1.08674 1.23421 0.90827 0.89430 0.89388 0.80662 0.89211 0.93548 0.88278 0.91017 0.76215 0.92817 0.92962 0.92320 0.91168 0.89327 0.89775 0.90960 0.89337 0.90288 0.93739 0.89453 0.80120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.51 11.48 59.85 0.69 1.19 16 2 N -0.38 -3.44 4.04 -67.79 -0.27 -3.72 16 3 C 0.03 0.30 10.81 -16.63 -0.18 0.12 16 4 C -0.04 -0.41 5.75 -83.90 -0.48 -0.90 16 5 N -0.46 -4.85 4.74 -171.01 -0.81 -5.66 16 6 C 0.04 0.46 4.59 -3.70 -0.02 0.44 16 7 C 0.14 1.76 6.61 -3.60 -0.02 1.73 16 8 N -0.64 -9.72 3.01 -178.19 -0.54 -10.25 16 9 C 0.71 13.91 8.30 -86.91 -0.72 13.19 16 10 O -0.60 -13.87 15.78 5.29 0.08 -13.78 16 11 N -0.72 -14.40 5.44 -65.22 -0.35 -14.76 16 12 C 0.17 3.75 4.65 -4.04 -0.02 3.73 16 13 C 0.00 -0.11 1.30 -155.66 -0.20 -0.31 16 14 C -0.49 -12.99 9.56 -34.44 -0.33 -13.32 16 15 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 16 C 0.08 2.29 5.40 -17.82 -0.10 2.19 16 17 N -0.88 -25.67 13.96 55.43 0.77 -24.89 16 18 Si 0.89 22.46 24.32 -169.99 -4.13 18.33 16 19 H -0.28 -7.26 6.87 56.52 0.39 -6.87 16 20 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 21 H -0.26 -6.47 6.80 56.52 0.38 -6.09 16 22 C -0.20 -4.06 9.88 -26.73 -0.26 -4.32 16 23 C -0.19 -3.60 9.93 -26.73 -0.27 -3.86 16 24 C 0.12 1.41 6.53 -3.60 -0.02 1.39 16 25 C 0.05 0.47 5.50 -3.70 -0.02 0.45 16 26 C 0.02 0.25 10.80 -17.22 -0.19 0.06 16 27 N -0.28 -3.25 12.57 30.70 0.39 -2.86 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.18 1.10 7.84 -52.49 -0.41 0.68 16 32 H 0.09 0.79 7.36 -51.93 -0.38 0.41 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.10 1.40 7.04 -51.93 -0.37 1.03 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.40 7.29 6.02 -40.82 -0.25 7.04 16 37 H 0.05 1.18 7.92 -51.93 -0.41 0.77 16 38 H 0.05 1.32 1.79 -51.93 -0.09 1.22 16 39 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.07 1.33 8.09 -51.93 -0.42 0.90 16 41 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 42 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.09 1.07 5.75 -51.93 -0.30 0.78 16 45 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.09 0.72 7.36 -51.93 -0.38 0.34 16 48 H 0.18 1.55 7.20 -52.49 -0.38 1.17 16 LS Contribution 379.91 15.07 5.73 5.73 Total: -1.00 -34.38 379.91 -8.49 -42.87 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -7.20 Total: 7.22 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -2.14 Total: 1.78 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: -0.82 Total: -62.15 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: 0.08 Total: -13.78 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.13 Total: 18.33 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.38 -8.49 -42.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366755069.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.336 kcal (2) G-P(sol) polarization free energy of solvation -34.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds