Wall clock time and date at job start Tue Mar 31 2020 18:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35966 * 126.07180 * 2 1 4 4 C 1.35705 * 107.55227 * 180.10360 * 3 2 1 5 5 N 1.40795 * 126.06797 * 179.89510 * 4 3 2 6 6 C 1.46902 * 110.99934 * 179.71363 * 5 4 3 7 7 C 1.53239 * 109.36076 * 172.76404 * 6 5 4 8 8 N 1.47080 * 108.52112 * 53.81819 * 7 6 5 9 9 C 1.34780 * 120.88084 * 128.79652 * 8 7 6 10 10 O 1.21587 * 119.99936 * 354.54981 * 9 8 7 11 11 N 1.34779 * 119.99693 * 174.55660 * 9 8 7 12 12 C 1.46503 * 119.99485 * 184.95273 * 11 9 8 13 13 C 1.52998 * 109.47183 * 185.02033 * 12 11 9 14 14 C 1.50704 * 115.54936 * 281.34674 * 13 12 11 15 15 H 1.07995 * 119.99820 * 147.06999 * 14 13 12 16 16 C 1.37878 * 120.00157 * 327.07029 * 14 13 12 17 17 N 1.31505 * 119.99980 * 163.96542 * 16 14 13 18 18 Si 1.86801 * 119.99594 * 343.96585 * 16 14 13 19 19 H 1.48503 * 109.47012 * 95.95486 * 18 16 14 20 20 H 1.48501 * 109.46803 * 215.94973 * 18 16 14 21 21 H 1.48500 * 109.47459 * 335.95230 * 18 16 14 22 22 C 1.52998 * 117.49946 * 135.63604 * 13 12 11 23 23 C 1.52998 * 117.49830 * 67.01070 * 13 12 11 24 24 C 1.47075 * 118.23873 * 308.81188 * 8 7 6 25 25 C 1.46898 * 111.01990 * 55.39904 * 5 4 3 26 26 C 1.40227 * 107.86273 * 359.63815 * 4 3 2 27 27 N 1.30864 * 108.36329 * 0.22549 * 26 4 3 28 28 H 1.08999 * 109.46821 * 270.28444 * 1 2 3 29 29 H 1.08998 * 109.47090 * 30.28134 * 1 2 3 30 30 H 1.08994 * 109.47189 * 150.28555 * 1 2 3 31 31 H 1.07997 * 126.22574 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.48973 * 52.79298 * 6 5 4 33 33 H 1.08996 * 109.49217 * 292.73623 * 6 5 4 34 34 H 1.08999 * 109.63067 * 173.52998 * 7 6 5 35 35 H 1.09005 * 109.63027 * 294.11101 * 7 6 5 36 36 H 0.96997 * 120.00361 * 4.94830 * 11 9 8 37 37 H 1.09001 * 109.47027 * 305.02195 * 12 11 9 38 38 H 1.09005 * 109.47274 * 65.01966 * 12 11 9 39 39 H 0.97004 * 120.00051 * 180.02562 * 17 16 14 40 40 H 1.09000 * 117.49975 * 359.97438 * 22 13 12 41 41 H 1.09002 * 117.49865 * 145.02942 * 22 13 12 42 42 H 1.08995 * 117.50111 * 214.98224 * 23 13 12 43 43 H 1.09004 * 117.49668 * 359.97438 * 23 13 12 44 44 H 1.08998 * 109.63052 * 170.89146 * 24 8 7 45 45 H 1.09004 * 109.63104 * 291.28407 * 24 8 7 46 46 H 1.09000 * 109.46880 * 67.26225 * 25 5 4 47 47 H 1.09002 * 109.51209 * 307.21812 * 25 5 4 48 48 H 1.08001 * 125.81378 * 180.22597 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2656 1.0990 0.0000 4 6 3.5524 0.6680 -0.0023 5 7 4.6999 1.4838 -0.0052 6 6 5.9236 0.6711 -0.0003 7 6 7.1404 1.5840 -0.1857 8 7 7.0916 2.6408 0.8360 9 6 8.1598 2.8981 1.6167 10 8 9.1458 2.1898 1.5505 11 7 8.1348 3.9404 2.4708 12 6 9.3328 4.2860 3.2399 13 6 9.0034 5.4168 4.2164 14 6 8.9468 6.7980 3.6162 15 1 8.2578 7.5302 4.0104 16 6 9.7748 7.1268 2.5639 17 7 9.5231 8.1940 1.8378 18 14 11.2540 6.0563 2.1696 19 1 10.8960 5.0928 1.0978 20 1 12.3766 6.9131 1.7102 21 1 11.6652 5.3122 3.3871 22 6 9.5276 5.2891 5.6481 23 6 8.0365 5.1034 5.3600 24 6 5.8463 3.4092 0.9835 25 6 4.6804 2.4245 1.1229 26 6 3.5364 -0.7342 0.0046 27 7 2.2897 -1.1322 0.0060 28 1 -0.3633 0.0051 1.0277 29 1 -0.3633 0.8874 -0.5182 30 1 -0.3633 -0.8925 -0.5094 31 1 1.9372 2.1278 -0.0004 32 1 5.8835 -0.0515 -0.8153 33 1 6.0061 0.1436 0.9499 34 1 8.0552 1.0031 -0.0683 35 1 7.1134 2.0331 -1.1786 36 1 7.3236 4.4618 2.5762 37 1 9.6716 3.4123 3.7967 38 1 10.1201 4.6111 2.5597 39 1 10.1054 8.4252 1.0972 40 1 10.1069 4.3992 5.8944 41 1 9.8318 6.2042 6.1562 42 1 7.3598 5.8963 5.6785 43 1 7.6347 4.0917 5.4164 44 1 5.9054 4.0349 1.8740 45 1 5.6966 4.0363 0.1046 46 1 4.7800 1.8728 2.0577 47 1 3.7387 2.9733 1.1230 48 1 4.4049 -1.3762 0.0082 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366755069.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:52 Heat of formation + Delta-G solvation = 94.661837 kcal Electronic energy + Delta-G solvation = -29144.094024 eV Core-core repulsion = 25237.182460 eV Total energy + Delta-G solvation = -3906.911565 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.26358 -41.39864 -39.38532 -38.55158 -35.80176 -35.01293 -34.37113 -33.66876 -32.24761 -30.69988 -29.16011 -28.11530 -26.91901 -26.33271 -24.83785 -23.27964 -22.82750 -21.61658 -21.36098 -21.28418 -20.34414 -19.52589 -18.39482 -18.02888 -17.69746 -17.17580 -16.55824 -16.42271 -16.11996 -15.89758 -15.65609 -15.47569 -15.45679 -15.19031 -14.94812 -14.88891 -14.55370 -14.06961 -13.83774 -13.69708 -13.47221 -13.41936 -13.25316 -12.97608 -12.59465 -12.49921 -12.34375 -12.16424 -12.14415 -11.93082 -11.80875 -11.53126 -11.32330 -11.18352 -10.76423 -10.72843 -10.39467 -10.32332 -10.07113 -9.47380 -8.53707 -8.39049 -6.29940 0.89434 1.27016 1.34626 1.40359 1.53546 1.66099 1.76701 2.09701 2.25404 2.75725 2.87643 2.99893 3.50406 3.73789 3.80038 3.93831 3.95528 3.95995 4.13128 4.17017 4.21082 4.31891 4.35222 4.43638 4.46029 4.48428 4.49649 4.66915 4.71539 4.72619 4.74286 4.78857 4.82879 4.86186 4.92282 4.99126 5.04048 5.22590 5.33075 5.45183 5.49896 5.57546 5.65771 5.89036 5.90920 6.08656 6.28377 6.34549 6.67906 6.69654 6.96925 7.29128 7.51621 8.75816 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019090 B = 0.002737 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.357711 B =10225.856901 C =10539.757850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.379 5.379 3 C 0.043 3.957 4 C -0.062 4.062 5 N -0.459 5.459 6 C 0.054 3.946 7 C 0.133 3.867 8 N -0.630 5.630 9 C 0.699 3.301 10 O -0.640 6.640 11 N -0.720 5.720 12 C 0.172 3.828 13 C -0.035 4.035 14 C -0.479 4.479 15 H 0.052 0.948 16 C 0.041 3.959 17 N -0.923 5.923 18 Si 0.937 3.063 19 H -0.296 1.296 20 H -0.303 1.303 21 H -0.251 1.251 22 C -0.192 4.192 23 C -0.157 4.157 24 C 0.112 3.888 25 C 0.054 3.946 26 C 0.014 3.986 27 N -0.319 5.319 28 H 0.085 0.915 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.205 0.795 32 H 0.108 0.892 33 H 0.038 0.962 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.408 0.592 37 H 0.060 0.940 38 H 0.026 0.974 39 H 0.266 0.734 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.035 0.965 47 H 0.114 0.886 48 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.151 -15.210 -3.606 24.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.164 5.164 3 C -0.104 4.104 4 C -0.168 4.168 5 N -0.178 5.178 6 C -0.074 4.074 7 C 0.010 3.990 8 N -0.368 5.368 9 C 0.400 3.600 10 O -0.523 6.523 11 N -0.376 5.376 12 C 0.048 3.952 13 C -0.037 4.037 14 C -0.516 4.516 15 H 0.070 0.930 16 C -0.159 4.159 17 N -0.562 5.562 18 Si 0.769 3.231 19 H -0.225 1.225 20 H -0.232 1.232 21 H -0.176 1.176 22 C -0.230 4.230 23 C -0.194 4.194 24 C -0.011 4.011 25 C -0.073 4.073 26 C -0.173 4.173 27 N -0.142 5.142 28 H 0.103 0.897 29 H 0.133 0.867 30 H 0.108 0.892 31 H 0.222 0.778 32 H 0.126 0.874 33 H 0.057 0.943 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.247 0.753 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.115 0.885 44 H 0.107 0.893 45 H 0.104 0.896 46 H 0.053 0.947 47 H 0.132 0.868 48 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -19.316 -16.261 -4.213 25.598 hybrid contribution 1.380 0.419 0.260 1.466 sum -17.936 -15.842 -3.952 24.254 Atomic orbital electron populations 1.22169 0.71662 1.05919 1.04532 1.48816 1.07752 1.02909 1.56895 1.22524 0.89354 0.94382 1.04157 1.19100 0.91273 0.90969 1.15410 1.59469 0.99729 1.17046 1.41567 1.22473 0.87919 0.94980 1.02021 1.21641 0.98554 0.88382 0.90469 1.47354 1.12641 1.39145 1.37615 1.16095 0.83257 0.81195 0.79415 1.90819 1.35195 1.52753 1.73491 1.45098 1.16214 1.31953 1.44324 1.20964 0.85989 0.95914 0.92351 1.19409 1.03933 0.92998 0.87322 1.20420 1.20686 0.95582 1.14959 0.92969 1.25453 0.99150 0.95931 0.95340 1.70017 1.38458 1.28883 1.18807 0.86069 0.80562 0.77520 0.78964 1.22542 1.23160 1.17591 1.23177 0.96991 1.02139 1.00700 1.22809 0.92129 1.01642 1.02859 1.21930 0.81955 0.93797 1.03438 1.22591 0.99458 0.94125 0.91143 1.24208 0.95751 0.94779 1.02545 1.77222 1.01971 1.10210 1.24832 0.89694 0.86740 0.89216 0.77827 0.87370 0.94321 0.89832 0.90185 0.75330 0.92204 0.95668 0.92432 0.89194 0.89503 0.89265 0.88483 0.89302 0.89647 0.94698 0.86801 0.79305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.66 11.48 127.77 1.47 2.12 16 2 N -0.38 -6.00 4.04 -368.39 -1.49 -7.49 16 3 C 0.04 0.64 10.81 83.47 0.90 1.54 16 4 C -0.06 -1.14 5.75 37.60 0.22 -0.93 16 5 N -0.46 -8.73 4.74 -694.95 -3.30 -12.02 16 6 C 0.05 1.08 4.59 86.38 0.40 1.47 16 7 C 0.13 3.36 6.61 86.35 0.57 3.93 16 8 N -0.63 -18.82 3.01 -835.93 -2.52 -21.33 16 9 C 0.70 27.40 8.30 179.05 1.49 28.89 16 10 O -0.64 -29.81 15.78 -3.99 -0.06 -29.87 16 11 N -0.72 -28.22 5.44 -478.52 -2.60 -30.82 16 12 C 0.17 7.55 4.65 86.38 0.40 7.95 16 13 C -0.04 -1.53 1.30 -52.93 -0.07 -1.60 16 14 C -0.48 -25.30 9.56 25.60 0.24 -25.06 16 15 H 0.05 2.99 8.06 -2.91 -0.02 2.97 16 16 C 0.04 2.32 5.40 84.66 0.46 2.78 16 17 N -0.92 -54.96 13.96 21.45 0.30 -54.66 16 18 Si 0.94 47.31 24.32 68.60 1.67 48.98 16 19 H -0.30 -15.74 6.87 99.48 0.68 -15.06 16 20 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 21 H -0.25 -11.97 6.80 99.48 0.68 -11.29 16 22 C -0.19 -7.26 9.88 30.60 0.30 -6.95 16 23 C -0.16 -5.52 9.93 30.60 0.30 -5.22 16 24 C 0.11 2.55 6.53 86.35 0.56 3.11 16 25 C 0.05 0.98 5.50 86.38 0.47 1.46 16 26 C 0.01 0.28 10.80 85.32 0.92 1.20 16 27 N -0.32 -6.86 12.57 -56.77 -0.71 -7.57 16 28 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.21 1.67 7.84 -2.91 -0.02 1.65 16 32 H 0.11 1.75 7.36 -2.39 -0.02 1.73 16 33 H 0.04 0.83 8.14 -2.39 -0.02 0.82 16 34 H 0.08 2.39 7.04 -2.39 -0.02 2.38 16 35 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.41 14.42 6.02 -92.71 -0.56 13.87 16 37 H 0.06 2.54 7.92 -2.39 -0.02 2.52 16 38 H 0.03 1.28 1.79 -2.38 0.00 1.28 16 39 H 0.27 15.13 8.31 -92.71 -0.77 14.35 16 40 H 0.09 3.07 8.09 -2.39 -0.02 3.06 16 41 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 42 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 43 H 0.10 2.98 8.14 -2.38 -0.02 2.96 16 44 H 0.09 2.01 5.75 -2.39 -0.01 2.00 16 45 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 46 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.11 1.48 7.36 -2.39 -0.02 1.46 16 48 H 0.19 3.09 7.20 -2.91 -0.02 3.07 16 Total: -1.00 -75.26 379.91 0.30 -74.96 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.37 Total: 25.11 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 8.64 Total: 14.70 kcal Atomic # 7 Polarization: -123.57 SS G_CDS: -10.32 Total: -133.89 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -0.06 Total: -29.87 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.67 Total: 48.98 kcal Total: -75.26 0.30 -74.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366755069.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.625 kcal (2) G-P(sol) polarization free energy of solvation -75.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds