Wall clock time and date at job start Tue Mar 31 2020 17:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46494 * 109.46788 * 2 1 4 4 N 1.40442 * 126.82337 * 270.04106 * 3 2 1 5 5 C 1.30722 * 106.79250 * 179.97438 * 4 3 2 6 6 N 1.33244 * 108.94544 * 359.75971 * 5 4 3 7 7 C 1.30828 * 109.82842 * 0.40371 * 6 5 4 8 8 C 1.50701 * 125.96153 * 179.86198 * 7 6 5 9 9 N 1.46497 * 109.47183 * 269.69316 * 8 7 6 10 10 N 1.40068 * 126.03554 * 89.97419 * 9 8 7 11 11 C 1.30831 * 108.34213 * 180.02562 * 10 9 8 12 12 C 1.50701 * 125.85945 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47353 * 246.03558 * 12 11 10 14 14 C 1.52998 * 109.47028 * 6.03806 * 12 11 10 15 15 C 1.53001 * 109.46731 * 126.03096 * 12 11 10 16 16 C 1.39823 * 108.27966 * 0.02562 * 11 10 9 17 17 C 1.50703 * 126.07979 * 179.97438 * 16 11 10 18 18 C 1.50696 * 109.47028 * 95.75379 * 17 16 11 19 19 H 1.07992 * 120.00384 * 359.97438 * 18 17 16 20 20 C 1.37888 * 119.99609 * 180.02562 * 18 17 16 21 21 N 1.31508 * 119.99904 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99669 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47211 * 59.99862 * 22 20 18 24 24 H 1.48502 * 109.47138 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47408 * 299.99969 * 22 20 18 26 26 C 1.35131 * 126.03745 * 270.28418 * 9 8 7 27 27 O 1.35756 * 126.19333 * 359.97438 * 26 9 8 28 28 H 1.08998 * 109.46764 * 299.99542 * 1 2 3 29 29 H 1.08999 * 109.47157 * 60.00040 * 1 2 3 30 30 H 1.09000 * 109.46434 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47384 * 240.00054 * 2 1 3 32 32 H 1.08999 * 109.47157 * 119.99960 * 2 1 3 33 33 H 1.08000 * 125.52229 * 180.02562 * 5 4 3 34 34 H 1.09003 * 109.46802 * 149.69017 * 8 7 6 35 35 H 1.08998 * 109.46469 * 29.69419 * 8 7 6 36 36 H 1.08993 * 109.47414 * 64.88837 * 13 12 11 37 37 H 1.09002 * 109.46712 * 184.88844 * 13 12 11 38 38 H 1.09002 * 109.46789 * 304.88750 * 13 12 11 39 39 H 1.08998 * 109.47629 * 59.99673 * 14 12 11 40 40 H 1.08996 * 109.47030 * 179.97438 * 14 12 11 41 41 H 1.09000 * 109.46895 * 299.99282 * 14 12 11 42 42 H 1.09000 * 109.47072 * 60.00632 * 15 12 11 43 43 H 1.09004 * 109.46751 * 179.97438 * 15 12 11 44 44 H 1.08992 * 109.47337 * 300.00417 * 15 12 11 45 45 H 1.09006 * 109.47133 * 335.75408 * 17 16 11 46 46 H 1.08994 * 109.47168 * 215.75553 * 17 16 11 47 47 H 0.97005 * 119.99397 * 179.97438 * 21 20 18 48 48 H 0.96698 * 114.00238 * 270.14175 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2981 2.1751 -1.1242 5 6 2.7072 3.3331 -0.6765 6 7 2.6944 3.3108 0.6557 7 6 2.2870 2.1408 1.0761 8 6 2.1387 1.7201 2.5156 9 7 3.3929 1.1236 2.9817 10 7 4.4591 1.8082 3.5787 11 6 5.3998 0.9426 3.8573 12 6 6.7231 1.2554 4.5069 13 6 7.8546 0.9952 3.5106 14 6 6.7471 2.7245 4.9337 15 6 6.9109 0.3642 5.7363 16 6 4.9671 -0.3223 3.4477 17 6 5.7394 -1.6098 3.5781 18 6 5.3143 -2.3254 4.8344 19 1 4.5607 -1.8913 5.4745 20 6 5.8885 -3.5342 5.1670 21 7 6.8066 -4.0626 4.3878 22 14 5.3611 -4.4216 6.7238 23 1 3.9083 -4.7213 6.6547 24 1 6.1222 -5.6902 6.8525 25 1 5.6330 -3.5590 7.9016 26 6 3.7279 -0.1834 2.9064 27 8 2.9640 -1.1780 2.3865 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8935 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.0031 4.1731 -1.2874 34 1 1.3351 0.9885 2.5993 35 1 1.9018 2.5915 3.1261 36 1 7.7702 1.6901 2.6752 37 1 8.8150 1.1377 4.0062 38 1 7.7849 -0.0278 3.1407 39 1 5.9410 2.9100 5.6435 40 1 7.7040 2.9506 5.4039 41 1 6.6133 3.3594 4.0578 42 1 6.8938 -0.6824 5.4324 43 1 7.8683 0.5901 6.2060 44 1 6.1048 0.5496 6.4461 45 1 6.8060 -1.3903 3.6282 46 1 5.5390 -2.2429 2.7138 47 1 7.2107 -4.9128 4.6220 48 1 2.3805 -1.6030 3.0299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596261274.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:34 Heat of formation + Delta-G solvation = 115.005913 kcal Electronic energy + Delta-G solvation = -30271.703252 eV Core-core repulsion = 26365.673873 eV Total energy + Delta-G solvation = -3906.029379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -42.20730 -40.96002 -37.27211 -36.09193 -35.19196 -33.66164 -33.08446 -30.89672 -30.38591 -29.82491 -27.33876 -26.70965 -26.43518 -25.95691 -24.18996 -22.90009 -21.90737 -21.67093 -20.29231 -20.15901 -18.34588 -17.45914 -17.06374 -16.31194 -16.03679 -15.85026 -15.20340 -14.95814 -14.59660 -14.31216 -14.18715 -14.09375 -13.72389 -13.25084 -13.17360 -13.05464 -12.79697 -12.53137 -12.42630 -12.15663 -12.08368 -11.68964 -11.55065 -11.47486 -11.47113 -11.11939 -10.98948 -10.83079 -10.76123 -10.54283 -10.38758 -10.27369 -10.03904 -9.82316 -9.73692 -9.63665 -9.45042 -9.31565 -8.63654 -8.40133 -7.51129 -6.03821 -4.06876 1.38360 2.06715 2.29704 2.57033 3.11221 3.27537 3.32700 3.34089 3.41891 3.91420 4.23837 4.32929 4.42055 4.63265 4.73936 4.78074 4.98080 5.07132 5.15174 5.22508 5.29355 5.39643 5.48235 5.55571 5.56540 5.77235 5.81377 5.99929 6.13247 6.22840 6.24480 6.26173 6.34268 6.38804 6.42702 6.51274 6.60354 6.64937 6.69368 6.78834 6.89069 6.95762 7.25628 7.34384 7.64666 7.75656 7.92015 8.00969 8.04373 8.25387 8.35084 8.97017 9.55498 11.04838 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012032 B = 0.004312 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.563983 B = 6491.497781 C = 8020.720119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.101 3.899 3 N -0.357 5.357 4 N -0.319 5.319 5 C 0.192 3.808 6 N -0.524 5.524 7 C 0.258 3.742 8 C 0.222 3.778 9 N -0.396 5.396 10 N -0.271 5.271 11 C 0.099 3.901 12 C 0.020 3.980 13 C -0.141 4.141 14 C -0.133 4.133 15 C -0.151 4.151 16 C -0.165 4.165 17 C 0.085 3.915 18 C -0.504 4.504 19 H 0.052 0.948 20 C 0.062 3.938 21 N -0.891 5.891 22 Si 0.887 3.113 23 H -0.279 1.279 24 H -0.288 1.288 25 H -0.276 1.276 26 C 0.220 3.780 27 O -0.462 6.462 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.125 0.875 33 H 0.216 0.784 34 H 0.106 0.894 35 H 0.126 0.874 36 H 0.047 0.953 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.106 0.894 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.038 0.962 46 H 0.024 0.976 47 H 0.262 0.738 48 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.350 9.492 -4.363 14.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.020 4.020 3 N -0.149 5.149 4 N -0.147 5.147 5 C -0.110 4.110 6 N -0.251 5.251 7 C -0.020 4.020 8 C 0.097 3.903 9 N -0.191 5.191 10 N -0.095 5.095 11 C -0.067 4.067 12 C 0.018 3.982 13 C -0.199 4.199 14 C -0.191 4.191 15 C -0.209 4.209 16 C -0.176 4.176 17 C 0.047 3.953 18 C -0.542 4.542 19 H 0.070 0.930 20 C -0.140 4.140 21 N -0.530 5.530 22 Si 0.715 3.285 23 H -0.205 1.205 24 H -0.214 1.214 25 H -0.202 1.202 26 C 0.057 3.943 27 O -0.265 6.265 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.142 0.858 33 H 0.233 0.767 34 H 0.124 0.876 35 H 0.144 0.856 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.125 0.875 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.056 0.944 46 H 0.043 0.957 47 H 0.072 0.928 48 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -9.488 10.614 -5.511 15.266 hybrid contribution -0.612 -1.639 1.082 2.057 sum -10.100 8.975 -4.429 14.219 Atomic orbital electron populations 1.22170 0.93966 1.03479 1.02821 1.22300 0.95238 0.77253 1.07190 1.50475 1.47896 1.12982 1.03542 1.78006 1.23356 1.04711 1.08646 1.25941 0.98531 0.96125 0.90435 1.70471 1.22841 1.20363 1.11459 1.24511 0.97002 0.87807 0.92712 1.19647 0.84228 1.00916 0.85528 1.48601 1.14757 1.05157 1.50617 1.77383 0.95791 1.18831 1.17451 1.22019 0.95484 0.91174 0.98044 1.18911 0.88271 0.95751 0.95297 1.21936 0.96744 1.03053 0.98168 1.21782 1.01006 0.95059 1.01208 1.22134 0.99932 1.03465 0.95376 1.20626 0.95190 0.98052 1.03781 1.17806 0.94395 0.86080 0.97019 1.20966 1.22239 1.04123 1.06915 0.93007 1.24957 0.95171 0.97274 0.96609 1.69936 1.26831 1.18819 1.37383 0.86741 0.78554 0.79139 0.84065 1.20485 1.21360 1.20181 1.18447 0.92625 0.80235 1.02992 1.84679 1.57278 1.46576 1.38006 0.92182 0.91843 0.89907 0.88462 0.85779 0.76729 0.87595 0.85614 0.93412 0.92325 0.90808 0.92726 0.92909 0.92696 0.87508 0.93391 0.93400 0.94424 0.95744 0.92850 0.75208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.24 37.16 0.38 -0.99 16 2 C 0.10 1.14 6.85 -4.04 -0.03 1.11 16 3 N -0.36 -5.04 3.64 -58.34 -0.21 -5.25 16 4 N -0.32 -4.79 12.70 29.29 0.37 -4.42 16 5 C 0.19 2.70 13.03 -91.80 -1.20 1.50 16 6 N -0.52 -8.28 11.19 -11.96 -0.13 -8.41 16 7 C 0.26 3.78 7.57 -155.69 -1.18 2.61 16 8 C 0.22 2.87 6.51 -5.19 -0.03 2.84 16 9 N -0.40 -6.65 3.60 -62.67 -0.23 -6.87 16 10 N -0.27 -5.13 11.86 33.66 0.40 -4.73 16 11 C 0.10 1.95 5.61 -82.43 -0.46 1.49 16 12 C 0.02 0.35 0.75 -155.66 -0.12 0.23 16 13 C -0.14 -2.38 8.36 37.16 0.31 -2.07 16 14 C -0.13 -2.04 7.96 37.16 0.30 -1.74 16 15 C -0.15 -2.77 8.24 37.16 0.31 -2.47 16 16 C -0.17 -3.46 5.11 -104.85 -0.54 -4.00 16 17 C 0.08 2.03 4.42 -29.04 -0.13 1.90 16 18 C -0.50 -12.70 7.49 -34.44 -0.26 -12.96 16 19 H 0.05 1.30 7.74 -52.49 -0.41 0.90 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.89 -24.73 13.29 55.43 0.74 -23.99 16 22 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 C 0.22 4.01 7.92 -16.92 -0.13 3.88 16 27 O -0.46 -7.03 10.48 -18.98 -0.20 -7.23 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.12 1.43 4.37 -51.93 -0.23 1.20 16 33 H 0.22 2.12 8.06 -52.49 -0.42 1.70 16 34 H 0.11 1.00 7.76 -51.93 -0.40 0.60 16 35 H 0.13 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 1.40 5.68 -51.93 -0.30 1.10 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.11 2.31 4.16 -51.93 -0.22 2.09 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.04 0.94 4.59 -51.93 -0.24 0.70 16 46 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 48 H 0.39 4.42 9.06 45.56 0.41 4.83 16 LS Contribution 388.68 15.07 5.86 5.86 Total: -1.00 -32.50 388.68 -7.73 -40.23 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -6.43 Total: 6.80 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -2.87 Total: -7.16 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 0.94 Total: -53.68 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.20 Total: -7.23 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.50 -7.73 -40.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596261274.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.232 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds