Wall clock time and date at job start Tue Mar 31 2020 18:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48565 * 111.00290 * 2 1 4 4 C 1.55290 * 107.00722 * 126.11570 * 3 2 1 5 5 C 1.53717 * 101.91038 * 22.58059 * 4 3 2 6 6 H 1.09002 * 111.27348 * 78.78816 * 5 4 3 7 7 C 1.52229 * 114.78246 * 207.00365 * 5 4 3 8 8 N 1.47716 * 106.36290 * 169.71177 * 7 5 4 9 9 C 1.34777 * 119.68469 * 128.23995 * 8 7 5 10 10 O 1.21597 * 119.99664 * 354.40018 * 9 8 7 11 11 N 1.34775 * 120.00567 * 174.40153 * 9 8 7 12 12 C 1.40192 * 120.00620 * 185.08612 * 11 9 8 13 13 C 1.40404 * 125.97013 * 359.97438 * 12 11 9 14 14 C 1.35242 * 107.86999 * 180.02562 * 13 12 11 15 15 N 1.34969 * 107.85690 * 0.02562 * 14 13 12 16 16 C 1.46500 * 125.97798 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.47010 * 124.99486 * 16 15 14 18 18 H 1.07999 * 120.00308 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99889 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00114 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99858 * 0.02562 * 19 17 16 22 22 H 1.48507 * 109.47117 * 89.99767 * 21 19 17 23 23 H 1.48494 * 109.47382 * 210.00104 * 21 19 17 24 24 H 1.48506 * 109.47255 * 330.00210 * 21 19 17 25 25 N 1.31211 * 125.97511 * 179.69099 * 12 11 9 26 26 C 1.46594 * 120.63456 * 307.95599 * 8 7 5 27 27 C 1.53963 * 110.57705 * 47.82354 * 26 8 7 28 28 C 1.45905 * 111.00271 * 118.96561 * 2 1 3 29 29 H 1.09004 * 109.29826 * 324.41206 * 28 2 1 30 30 H 1.08999 * 109.46620 * 301.03483 * 1 2 3 31 31 H 1.08998 * 109.47104 * 61.03776 * 1 2 3 32 32 H 1.08999 * 109.46671 * 181.03620 * 1 2 3 33 33 H 1.09000 * 109.93418 * 245.45722 * 3 2 1 34 34 H 1.09007 * 109.92369 * 6.57388 * 3 2 1 35 35 H 1.09002 * 110.94209 * 140.73710 * 4 3 2 36 36 H 1.08997 * 110.94506 * 264.42846 * 4 3 2 37 37 H 1.09002 * 110.06100 * 50.50071 * 7 5 4 38 38 H 1.08992 * 110.06670 * 288.92677 * 7 5 4 39 39 H 0.97004 * 119.99594 * 5.07995 * 11 9 8 40 40 H 1.07999 * 126.06432 * 0.02562 * 13 12 11 41 41 H 1.08001 * 126.07380 * 179.97438 * 14 13 12 42 42 H 1.08996 * 109.46792 * 244.99973 * 16 15 14 43 43 H 1.09000 * 109.47092 * 4.99849 * 16 15 14 44 44 H 0.97000 * 119.99706 * 179.97438 * 20 19 17 45 45 H 1.08997 * 109.25862 * 168.10300 * 26 8 7 46 46 H 1.09000 * 109.26160 * 287.54065 * 26 8 7 47 47 H 1.08996 * 109.88316 * 68.39780 * 27 26 8 48 48 H 1.09002 * 109.88127 * 189.47739 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0015 1.3869 0.0000 4 6 2.9814 1.4973 1.1996 5 6 3.3647 0.0270 1.4324 6 1 4.1097 -0.3067 0.7100 7 6 3.7724 -0.3078 2.8604 8 7 3.8535 -1.7808 2.9355 9 6 4.9666 -2.3640 3.4228 10 8 5.9359 -1.6851 3.7026 11 7 5.0055 -3.6994 3.5999 12 6 6.1214 -4.2942 4.2053 13 6 7.2625 -3.6223 4.6718 14 6 8.1067 -4.5455 5.1856 15 7 7.5269 -5.7568 5.0511 16 6 8.0985 -7.0367 5.4770 17 6 7.1306 -7.7387 6.3943 18 1 6.1841 -7.2778 6.6355 19 6 7.4529 -8.9699 6.9247 20 7 6.6080 -9.5828 7.7248 21 14 9.0896 -9.7674 6.5069 22 1 10.1118 -9.3492 7.4997 23 1 8.9431 -11.2447 6.5396 24 1 9.5153 -9.3421 5.1492 25 7 6.2797 -5.5755 4.4396 26 6 2.7325 -2.6143 2.4910 27 6 2.2300 -2.1539 1.1105 28 6 1.9920 -0.6597 1.1917 29 1 1.3400 -0.4439 2.0383 30 1 -0.3632 0.5298 0.8806 31 1 -0.3633 0.4976 -0.8991 32 1 -0.3632 -1.0275 0.0186 33 1 2.5321 1.5813 -0.9321 34 1 1.1842 2.0986 0.1173 35 1 3.8565 2.0908 0.9346 36 1 2.4812 1.9126 2.0744 37 1 3.0224 0.0618 3.5597 38 1 4.7439 0.1323 3.0848 39 1 4.2612 -4.2492 3.3086 40 1 7.4354 -2.5571 4.6282 41 1 9.0736 -4.3486 5.6246 42 1 8.2871 -7.6593 4.6025 43 1 9.0352 -6.8585 6.0050 44 1 6.8347 -10.4491 8.0977 45 1 3.0595 -3.6521 2.4267 46 1 1.9195 -2.5384 3.2131 47 1 2.9823 -2.3687 0.3516 48 1 1.2988 -2.6648 0.8656 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878766005.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:08 Heat of formation + Delta-G solvation = 85.751293 kcal Electronic energy + Delta-G solvation = -28566.361058 eV Core-core repulsion = 24659.063103 eV Total energy + Delta-G solvation = -3907.297955 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.18470 -40.43516 -39.30542 -36.28451 -34.89882 -33.40590 -32.95775 -31.91980 -31.06944 -29.47860 -29.13764 -27.13686 -26.28797 -24.59335 -23.35236 -22.66226 -21.47811 -20.99956 -20.67260 -20.07313 -19.21309 -17.93185 -17.05312 -16.59446 -16.30257 -15.90379 -15.80082 -15.63676 -14.88749 -14.76088 -14.65108 -14.35215 -13.91352 -13.81781 -13.67844 -13.45861 -13.07804 -13.00189 -12.85420 -12.58177 -12.50491 -12.26332 -12.09644 -11.72590 -11.68932 -11.65035 -11.42483 -11.14745 -11.08169 -10.75841 -10.62950 -10.52276 -10.07827 -9.98043 -9.70440 -9.50384 -8.91977 -8.78082 -8.75126 -8.14121 -7.44579 -6.22119 -4.24077 2.27838 2.60640 3.04245 3.16261 3.22734 3.24129 3.34291 3.42521 3.80715 3.99611 4.07559 4.22953 4.24352 4.42012 4.60543 4.69931 4.82203 4.92747 4.94241 5.01577 5.02879 5.05894 5.10087 5.21894 5.34524 5.38151 5.40882 5.43704 5.47603 5.50130 5.58551 5.65831 5.72925 5.83554 5.95564 6.12783 6.28965 6.39255 6.48232 6.49097 6.60845 6.66839 6.74917 6.86922 7.29317 7.45349 7.81480 7.86742 8.35753 8.54813 8.61878 8.88094 9.33069 10.90600 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.028668 B = 0.002121 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.477463 B =13196.463339 C =13812.877716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.525 5.525 3 C 0.042 3.958 4 C -0.132 4.132 5 C -0.112 4.112 6 H 0.094 0.906 7 C 0.144 3.856 8 N -0.628 5.628 9 C 0.717 3.283 10 O -0.566 6.566 11 N -0.644 5.644 12 C 0.278 3.722 13 C -0.282 4.282 14 C 0.051 3.949 15 N -0.321 5.321 16 C 0.232 3.768 17 C -0.533 4.533 18 H 0.085 0.915 19 C 0.075 3.925 20 N -0.888 5.888 21 Si 0.873 3.127 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.264 1.264 25 N -0.300 5.300 26 C 0.110 3.890 27 C -0.114 4.114 28 C 0.068 3.932 29 H 0.048 0.952 30 H 0.027 0.973 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.102 0.898 39 H 0.406 0.594 40 H 0.162 0.838 41 H 0.168 0.832 42 H 0.041 0.959 43 H 0.049 0.951 44 H 0.268 0.732 45 H 0.083 0.917 46 H 0.069 0.931 47 H 0.078 0.922 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.432 21.611 -14.870 28.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.249 5.249 3 C -0.086 4.086 4 C -0.171 4.171 5 C -0.132 4.132 6 H 0.113 0.887 7 C 0.021 3.979 8 N -0.366 5.366 9 C 0.417 3.583 10 O -0.442 6.442 11 N -0.296 5.296 12 C 0.024 3.976 13 C -0.313 4.313 14 C -0.099 4.099 15 N -0.103 5.103 16 C 0.113 3.887 17 C -0.571 4.571 18 H 0.103 0.897 19 C -0.128 4.128 20 N -0.526 5.526 21 Si 0.699 3.301 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.189 1.189 25 N -0.131 5.131 26 C -0.014 4.014 27 C -0.153 4.153 28 C -0.041 4.041 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.120 0.880 39 H 0.244 0.756 40 H 0.179 0.821 41 H 0.186 0.814 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.101 0.899 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.095 20.385 -15.062 27.283 hybrid contribution 0.258 0.221 0.554 0.650 sum -9.837 20.607 -14.508 27.053 Atomic orbital electron populations 1.22548 0.87528 1.02173 1.00635 1.63279 1.07937 1.14320 1.39335 1.23212 0.97531 0.88901 0.98921 1.22593 0.99821 0.96236 0.98409 1.22560 0.97432 0.95238 0.97920 0.88723 1.21410 1.03577 0.78078 0.94804 1.47347 1.15366 1.06696 1.67189 1.15559 0.83065 0.81164 0.78472 1.90849 1.33978 1.62463 1.56872 1.41642 1.19639 1.05941 1.62392 1.18813 0.88685 0.91305 0.98819 1.21519 0.94965 1.01328 1.13521 1.22543 1.00025 0.85345 1.01950 1.48586 1.11000 1.07227 1.43441 1.20030 0.94377 0.78027 0.96235 1.21114 1.04741 1.03867 1.27409 0.89651 1.24841 0.97072 0.96453 0.94465 1.69874 1.35690 1.15694 1.31298 0.86903 0.84140 0.79512 0.79526 1.19725 1.20566 1.18853 1.77382 1.01237 1.13530 1.20953 1.21696 0.89451 0.94486 0.95736 1.21651 1.02198 0.94586 0.96839 1.22110 0.95449 0.95154 0.91355 0.93365 0.95475 0.91325 0.91271 0.90185 0.92599 0.90117 0.91052 0.91387 0.87995 0.75592 0.82060 0.81437 0.94077 0.93357 0.92213 0.89932 0.91240 0.90322 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.18 60.07 0.55 0.67 16 2 N -0.53 -3.90 5.40 -232.11 -1.25 -5.16 16 3 C 0.04 0.26 6.92 -1.69 -0.01 0.25 16 4 C -0.13 -0.80 6.53 -25.14 -0.16 -0.96 16 5 C -0.11 -0.87 2.85 -89.39 -0.25 -1.13 16 6 H 0.09 0.89 8.12 -51.93 -0.42 0.47 16 7 C 0.14 1.33 5.97 -3.77 -0.02 1.31 16 8 N -0.63 -6.89 3.00 -178.23 -0.53 -7.43 16 9 C 0.72 10.89 8.23 -86.92 -0.72 10.17 16 10 O -0.57 -10.21 12.86 5.28 0.07 -10.14 16 11 N -0.64 -10.39 5.33 -15.50 -0.08 -10.47 16 12 C 0.28 5.66 8.11 -154.36 -1.25 4.41 16 13 C -0.28 -5.60 9.61 -39.83 -0.38 -5.98 16 14 C 0.05 0.99 11.44 -17.24 -0.20 0.79 16 15 N -0.32 -7.35 3.67 -62.56 -0.23 -7.58 16 16 C 0.23 5.55 5.33 -5.20 -0.03 5.52 16 17 C -0.53 -15.11 9.78 -34.44 -0.34 -15.44 16 18 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 19 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 20 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 21 Si 0.87 20.20 27.47 -169.99 -4.67 15.53 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 25 N -0.30 -6.96 12.41 31.44 0.39 -6.57 16 26 C 0.11 0.91 6.23 -3.49 -0.02 0.89 16 27 C -0.11 -0.84 6.06 -26.98 -0.16 -1.01 16 28 C 0.07 0.51 1.75 -67.74 -0.12 0.39 16 29 H 0.05 0.36 7.54 -51.93 -0.39 -0.03 16 30 H 0.03 0.15 8.04 -51.93 -0.42 -0.26 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.30 7.61 -51.93 -0.40 -0.09 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 37 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 38 H 0.10 1.09 6.98 -51.93 -0.36 0.73 16 39 H 0.41 5.50 6.28 -40.82 -0.26 5.24 16 40 H 0.16 3.13 5.93 -52.49 -0.31 2.82 16 41 H 0.17 2.59 8.06 -52.49 -0.42 2.17 16 42 H 0.04 0.98 7.20 -51.93 -0.37 0.60 16 43 H 0.05 1.04 7.50 -51.93 -0.39 0.66 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.08 0.66 5.65 -51.93 -0.29 0.37 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.08 0.67 8.12 -51.93 -0.42 0.25 16 48 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 376.74 15.07 5.68 5.68 Total: -1.00 -34.21 376.74 -10.50 -44.71 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -7.42 Total: 5.43 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -3.21 Total: 1.90 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: -0.94 Total: -63.11 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.07 Total: -10.14 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.67 Total: 15.53 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.21 -10.50 -44.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878766005.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.463 kcal (2) G-P(sol) polarization free energy of solvation -34.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds