Wall clock time and date at job start Tue Mar 31 2020 18:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48565 * 111.00290 * 2 1 4 4 C 1.55290 * 107.00722 * 126.11570 * 3 2 1 5 5 C 1.53717 * 101.91038 * 22.58059 * 4 3 2 6 6 H 1.09002 * 111.27348 * 78.78816 * 5 4 3 7 7 C 1.52229 * 114.78246 * 207.00365 * 5 4 3 8 8 N 1.47716 * 106.36290 * 169.71177 * 7 5 4 9 9 C 1.34777 * 119.68469 * 128.23995 * 8 7 5 10 10 O 1.21597 * 119.99664 * 354.40018 * 9 8 7 11 11 N 1.34775 * 120.00567 * 174.40153 * 9 8 7 12 12 C 1.40192 * 120.00620 * 185.08612 * 11 9 8 13 13 C 1.40404 * 125.97013 * 359.97438 * 12 11 9 14 14 C 1.35242 * 107.86999 * 180.02562 * 13 12 11 15 15 N 1.34969 * 107.85690 * 0.02562 * 14 13 12 16 16 C 1.46500 * 125.97798 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.47010 * 124.99486 * 16 15 14 18 18 H 1.07999 * 120.00308 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99889 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00114 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99858 * 0.02562 * 19 17 16 22 22 H 1.48507 * 109.47117 * 89.99767 * 21 19 17 23 23 H 1.48494 * 109.47382 * 210.00104 * 21 19 17 24 24 H 1.48506 * 109.47255 * 330.00210 * 21 19 17 25 25 N 1.31211 * 125.97511 * 179.69099 * 12 11 9 26 26 C 1.46594 * 120.63456 * 307.95599 * 8 7 5 27 27 C 1.53963 * 110.57705 * 47.82354 * 26 8 7 28 28 C 1.45905 * 111.00271 * 118.96561 * 2 1 3 29 29 H 1.09004 * 109.29826 * 324.41206 * 28 2 1 30 30 H 1.08999 * 109.46620 * 301.03483 * 1 2 3 31 31 H 1.08998 * 109.47104 * 61.03776 * 1 2 3 32 32 H 1.08999 * 109.46671 * 181.03620 * 1 2 3 33 33 H 1.09000 * 109.93418 * 245.45722 * 3 2 1 34 34 H 1.09007 * 109.92369 * 6.57388 * 3 2 1 35 35 H 1.09002 * 110.94209 * 140.73710 * 4 3 2 36 36 H 1.08997 * 110.94506 * 264.42846 * 4 3 2 37 37 H 1.09002 * 110.06100 * 50.50071 * 7 5 4 38 38 H 1.08992 * 110.06670 * 288.92677 * 7 5 4 39 39 H 0.97004 * 119.99594 * 5.07995 * 11 9 8 40 40 H 1.07999 * 126.06432 * 0.02562 * 13 12 11 41 41 H 1.08001 * 126.07380 * 179.97438 * 14 13 12 42 42 H 1.08996 * 109.46792 * 244.99973 * 16 15 14 43 43 H 1.09000 * 109.47092 * 4.99849 * 16 15 14 44 44 H 0.97000 * 119.99706 * 179.97438 * 20 19 17 45 45 H 1.08997 * 109.25862 * 168.10300 * 26 8 7 46 46 H 1.09000 * 109.26160 * 287.54065 * 26 8 7 47 47 H 1.08996 * 109.88316 * 68.39780 * 27 26 8 48 48 H 1.09002 * 109.88127 * 189.47739 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0015 1.3869 0.0000 4 6 2.9814 1.4973 1.1996 5 6 3.3647 0.0270 1.4324 6 1 4.1097 -0.3067 0.7100 7 6 3.7724 -0.3078 2.8604 8 7 3.8535 -1.7808 2.9355 9 6 4.9666 -2.3640 3.4228 10 8 5.9359 -1.6851 3.7026 11 7 5.0055 -3.6994 3.5999 12 6 6.1214 -4.2942 4.2053 13 6 7.2625 -3.6223 4.6718 14 6 8.1067 -4.5455 5.1856 15 7 7.5269 -5.7568 5.0511 16 6 8.0985 -7.0367 5.4770 17 6 7.1306 -7.7387 6.3943 18 1 6.1841 -7.2778 6.6355 19 6 7.4529 -8.9699 6.9247 20 7 6.6080 -9.5828 7.7248 21 14 9.0896 -9.7674 6.5069 22 1 10.1118 -9.3492 7.4997 23 1 8.9431 -11.2447 6.5396 24 1 9.5153 -9.3421 5.1492 25 7 6.2797 -5.5755 4.4396 26 6 2.7325 -2.6143 2.4910 27 6 2.2300 -2.1539 1.1105 28 6 1.9920 -0.6597 1.1917 29 1 1.3400 -0.4439 2.0383 30 1 -0.3632 0.5298 0.8806 31 1 -0.3633 0.4976 -0.8991 32 1 -0.3632 -1.0275 0.0186 33 1 2.5321 1.5813 -0.9321 34 1 1.1842 2.0986 0.1173 35 1 3.8565 2.0908 0.9346 36 1 2.4812 1.9126 2.0744 37 1 3.0224 0.0618 3.5597 38 1 4.7439 0.1323 3.0848 39 1 4.2612 -4.2492 3.3086 40 1 7.4354 -2.5571 4.6282 41 1 9.0736 -4.3486 5.6246 42 1 8.2871 -7.6593 4.6025 43 1 9.0352 -6.8585 6.0050 44 1 6.8347 -10.4491 8.0977 45 1 3.0595 -3.6521 2.4267 46 1 1.9195 -2.5384 3.2131 47 1 2.9823 -2.3687 0.3516 48 1 1.2988 -2.6648 0.8656 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878766005.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:07 Heat of formation + Delta-G solvation = 61.971302 kcal Electronic energy + Delta-G solvation = -28567.392236 eV Core-core repulsion = 24659.063103 eV Total energy + Delta-G solvation = -3908.329133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.37483 -41.61233 -40.32558 -37.16597 -36.32409 -35.22696 -33.75794 -33.14842 -32.38540 -30.98133 -29.94420 -28.89188 -26.95063 -25.46506 -24.38608 -24.05100 -22.74885 -21.93901 -21.57144 -21.21271 -20.44802 -19.10297 -19.02326 -18.08308 -17.28451 -17.04759 -16.69030 -16.35486 -16.33420 -16.04479 -15.55762 -15.51057 -15.20398 -14.81599 -14.61599 -14.37038 -14.35963 -14.26922 -13.91256 -13.80438 -13.64750 -13.41505 -13.16237 -12.98487 -12.52145 -12.37167 -12.32784 -12.23316 -12.20727 -12.02137 -11.82537 -11.65020 -11.62292 -11.46368 -11.16994 -11.04005 -10.85902 -9.92114 -9.70483 -9.30234 -9.02547 -8.36512 -6.46478 1.03822 1.08911 1.37446 1.40599 1.50272 1.66689 1.98452 2.29883 2.35890 2.75823 2.88723 2.96066 3.46816 3.62750 3.82290 3.91280 3.96038 4.07100 4.20503 4.23357 4.30065 4.41252 4.43283 4.54182 4.56291 4.59376 4.62885 4.67861 4.74381 4.78303 4.84729 4.86054 4.90647 4.94451 4.97828 5.03941 5.08890 5.14787 5.25183 5.27471 5.34116 5.51809 5.67701 5.91427 5.97603 6.02763 6.15987 6.42211 6.54337 6.61120 7.07252 7.16402 7.33557 8.80534 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.028668 B = 0.002121 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.477463 B =13196.463339 C =13812.877716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.541 5.541 3 C 0.041 3.959 4 C -0.126 4.126 5 C -0.107 4.107 6 H 0.075 0.925 7 C 0.143 3.857 8 N -0.617 5.617 9 C 0.712 3.288 10 O -0.597 6.597 11 N -0.640 5.640 12 C 0.283 3.717 13 C -0.293 4.293 14 C 0.062 3.938 15 N -0.345 5.345 16 C 0.239 3.761 17 C -0.546 4.546 18 H 0.026 0.974 19 C 0.013 3.987 20 N -0.942 5.942 21 Si 0.956 3.044 22 H -0.253 1.253 23 H -0.281 1.281 24 H -0.240 1.240 25 N -0.350 5.350 26 C 0.106 3.894 27 C -0.107 4.107 28 C 0.072 3.928 29 H 0.054 0.946 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.416 0.584 40 H 0.167 0.833 41 H 0.211 0.789 42 H 0.045 0.955 43 H 0.082 0.918 44 H 0.272 0.728 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.064 0.936 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.646 22.698 -15.889 29.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.264 5.264 3 C -0.086 4.086 4 C -0.164 4.164 5 C -0.127 4.127 6 H 0.094 0.906 7 C 0.021 3.979 8 N -0.354 5.354 9 C 0.413 3.587 10 O -0.475 6.475 11 N -0.294 5.294 12 C 0.028 3.972 13 C -0.325 4.325 14 C -0.086 4.086 15 N -0.127 5.127 16 C 0.120 3.880 17 C -0.584 4.584 18 H 0.045 0.955 19 C -0.186 4.186 20 N -0.581 5.581 21 Si 0.777 3.223 22 H -0.177 1.177 23 H -0.207 1.207 24 H -0.163 1.163 25 N -0.181 5.181 26 C -0.017 4.017 27 C -0.146 4.146 28 C -0.037 4.037 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.256 0.744 40 H 0.184 0.816 41 H 0.228 0.772 42 H 0.063 0.937 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.101 0.899 46 H 0.106 0.894 47 H 0.083 0.917 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.369 21.524 -16.120 28.477 hybrid contribution -0.161 0.022 0.844 0.860 sum -9.530 21.546 -15.276 28.078 Atomic orbital electron populations 1.22575 0.86595 1.02500 1.01176 1.63262 1.08919 1.15004 1.39265 1.23237 0.97874 0.88654 0.98810 1.22583 1.00122 0.94904 0.98835 1.22436 0.97271 0.96779 0.96260 0.90640 1.21554 1.03335 0.76739 0.96269 1.47465 1.14615 1.07670 1.65678 1.15746 0.83813 0.80572 0.78550 1.90813 1.35472 1.62900 1.58339 1.41694 1.18993 1.06554 1.62149 1.19148 0.89712 0.90773 0.97607 1.21711 0.95094 1.01644 1.14015 1.23237 1.01188 0.83843 1.00346 1.48496 1.11516 1.07781 1.44893 1.19886 0.94195 0.78490 0.95465 1.21227 1.03720 1.04659 1.28756 0.95532 1.25931 1.01976 0.96821 0.93823 1.70051 1.38641 1.16453 1.32950 0.85611 0.78147 0.77818 0.80769 1.17739 1.20651 1.16275 1.77299 1.02471 1.15182 1.23099 1.21915 0.88900 0.94090 0.96820 1.21583 1.02386 0.95030 0.95592 1.22066 0.95047 0.94874 0.91730 0.92831 0.94966 0.90736 0.91095 0.90424 0.91385 0.89610 0.89998 0.89516 0.89631 0.74390 0.81573 0.77199 0.93696 0.90027 0.91906 0.89907 0.89407 0.91693 0.88714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.18 127.69 1.17 1.37 16 2 N -0.54 -7.09 5.40 -888.26 -4.80 -11.88 16 3 C 0.04 0.44 6.92 86.77 0.60 1.04 16 4 C -0.13 -1.31 6.53 31.62 0.21 -1.11 16 5 C -0.11 -1.57 2.85 -9.99 -0.03 -1.60 16 6 H 0.08 1.41 8.12 -2.39 -0.02 1.39 16 7 C 0.14 2.51 5.97 85.89 0.51 3.03 16 8 N -0.62 -13.19 3.00 -836.04 -2.51 -15.69 16 9 C 0.71 21.68 8.23 179.05 1.47 23.15 16 10 O -0.60 -21.70 12.86 -4.02 -0.05 -21.75 16 11 N -0.64 -20.90 5.33 -321.23 -1.71 -22.61 16 12 C 0.28 11.69 8.11 133.31 1.08 12.77 16 13 C -0.29 -11.56 9.61 22.11 0.21 -11.35 16 14 C 0.06 2.33 11.44 83.52 0.96 3.29 16 15 N -0.34 -15.72 3.67 -351.85 -1.29 -17.01 16 16 C 0.24 11.19 5.33 85.63 0.46 11.64 16 17 C -0.55 -31.68 9.78 25.60 0.25 -31.43 16 18 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 19 C 0.01 0.75 5.47 84.66 0.46 1.21 16 20 N -0.94 -58.22 13.96 21.45 0.30 -57.92 16 21 Si 0.96 40.89 27.47 68.60 1.88 42.77 16 22 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 23 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.24 -9.26 6.54 99.48 0.65 -8.61 16 25 N -0.35 -16.60 12.41 -54.43 -0.68 -17.27 16 26 C 0.11 1.63 6.23 86.69 0.54 2.17 16 27 C -0.11 -1.44 6.06 30.44 0.18 -1.26 16 28 C 0.07 0.94 1.75 45.43 0.08 1.02 16 29 H 0.05 0.67 7.54 -2.38 -0.02 0.65 16 30 H 0.03 0.29 8.04 -2.39 -0.02 0.27 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 0.57 7.61 -2.38 -0.02 0.55 16 35 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.08 0.71 8.12 -2.39 -0.02 0.69 16 37 H 0.09 1.23 8.07 -2.39 -0.02 1.21 16 38 H 0.09 1.82 6.98 -2.39 -0.02 1.81 16 39 H 0.42 11.44 6.28 -92.71 -0.58 10.86 16 40 H 0.17 6.40 5.93 -2.91 -0.02 6.38 16 41 H 0.21 5.81 8.06 -2.91 -0.02 5.78 16 42 H 0.05 2.06 7.20 -2.39 -0.02 2.04 16 43 H 0.08 3.27 7.50 -2.39 -0.02 3.25 16 44 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 45 H 0.08 1.28 5.65 -2.39 -0.01 1.27 16 46 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.06 1.07 8.12 -2.39 -0.02 1.06 16 48 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -77.65 376.74 -0.36 -78.01 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: 0.33 Total: 29.41 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 8.16 Total: 13.95 kcal Atomic # 7 Polarization: -131.71 SS G_CDS: -10.69 Total: -142.39 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.05 Total: -21.75 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 1.88 Total: 42.77 kcal Total: -77.65 -0.36 -78.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878766005.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.982 kcal (2) G-P(sol) polarization free energy of solvation -77.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds