Wall clock time and date at job start Tue Mar 31 2020 18:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46978 * 111.00206 * 2 1 4 4 C 1.53389 * 109.71958 * 53.28563 * 3 2 1 5 5 N 1.46654 * 108.23740 * 49.88153 * 4 3 2 6 6 N 1.39398 * 128.33450 * 163.37576 * 5 4 3 7 7 C 1.31479 * 108.05276 * 180.24175 * 6 5 4 8 8 N 1.40197 * 125.93415 * 179.97438 * 7 6 5 9 9 C 1.34774 * 119.99480 * 179.97438 * 8 7 6 10 10 O 1.21585 * 120.00507 * 359.97438 * 9 8 7 11 11 N 1.34783 * 119.99525 * 179.97438 * 9 8 7 12 12 C 1.46506 * 119.99712 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.46772 * 90.00313 * 12 11 9 14 14 H 1.07997 * 120.00283 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99734 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99992 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00031 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47037 * 90.00057 * 17 15 13 19 19 H 1.48500 * 109.47204 * 209.99500 * 17 15 13 20 20 H 1.48494 * 109.47229 * 329.99861 * 17 15 13 21 21 C 1.46497 * 120.00543 * 359.97438 * 11 9 8 22 22 C 1.53003 * 109.47088 * 89.99570 * 21 11 9 23 23 C 1.53000 * 117.49917 * 243.62523 * 22 21 11 24 24 C 1.52993 * 117.49977 * 175.00147 * 22 21 11 25 25 C 1.40641 * 108.12637 * 359.69694 * 7 6 5 26 26 C 1.34499 * 107.75198 * 0.37062 * 25 7 6 27 27 C 1.47358 * 111.00234 * 124.12223 * 2 1 3 28 28 H 1.08996 * 109.47266 * 299.83211 * 1 2 3 29 29 H 1.08996 * 109.47483 * 59.83149 * 1 2 3 30 30 H 1.09003 * 109.47160 * 179.82975 * 1 2 3 31 31 H 1.08993 * 109.43335 * 173.35998 * 3 2 1 32 32 H 1.08999 * 109.42806 * 293.21321 * 3 2 1 33 33 H 1.09003 * 109.71215 * 169.56499 * 4 3 2 34 34 H 1.09004 * 109.71319 * 290.15694 * 4 3 2 35 35 H 0.96995 * 120.00489 * 359.96658 * 8 7 6 36 36 H 1.08999 * 109.47149 * 209.99912 * 12 11 9 37 37 H 1.08995 * 109.47002 * 330.00149 * 12 11 9 38 38 H 0.97007 * 119.99857 * 179.97438 * 16 15 13 39 39 H 1.08992 * 109.47153 * 209.99890 * 21 11 9 40 40 H 1.09000 * 109.46756 * 330.00093 * 21 11 9 41 41 H 1.09006 * 115.54468 * 29.33528 * 22 21 11 42 42 H 1.09001 * 117.49904 * 0.02562 * 23 22 21 43 43 H 1.09004 * 117.49543 * 145.02171 * 23 22 21 44 44 H 1.08996 * 117.50174 * 214.97842 * 24 22 21 45 45 H 1.09005 * 117.49865 * 0.02562 * 24 22 21 46 46 H 1.07999 * 126.12754 * 180.26412 * 25 7 6 47 47 H 1.08999 * 109.74655 * 166.25839 * 27 2 1 48 48 H 1.08998 * 109.78870 * 45.55976 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9957 1.3721 0.0000 4 6 1.3753 2.1647 1.1575 5 7 1.5150 1.3719 2.3834 6 7 1.3949 1.7962 3.7058 7 6 1.6019 0.7590 4.4868 8 7 1.5708 0.7653 5.8884 9 6 1.8011 -0.3728 6.5726 10 8 2.0353 -1.4050 5.9744 11 7 1.7717 -0.3666 7.9201 12 6 2.0214 -1.6039 8.6639 13 6 3.4961 -1.7303 8.9478 14 1 4.1789 -0.9657 8.6079 15 6 3.9735 -2.8225 9.6407 16 7 3.1420 -3.7538 10.0542 17 14 5.8014 -2.9796 9.9921 18 1 6.1132 -2.3316 11.2914 19 1 6.1719 -4.4163 10.0541 20 1 6.5723 -2.3158 8.9103 21 6 1.4901 0.8772 8.6411 22 6 -0.0182 1.0080 8.8626 23 6 -0.7317 2.1828 8.1906 24 6 -0.5089 2.1876 9.7042 25 6 1.8536 -0.3592 3.6718 26 6 1.7979 0.0463 2.3906 27 6 1.9971 -0.7717 1.1388 28 1 -0.3633 0.5112 0.8914 29 1 -0.3634 0.5164 -0.8884 30 1 -0.3633 -1.0277 -0.0031 31 1 3.0788 1.3448 0.1188 32 1 1.7474 1.8558 -0.9447 33 1 1.8962 3.1152 1.2731 34 1 0.3198 2.3462 0.9547 35 1 1.3837 1.5887 6.3658 36 1 1.4711 -1.5798 9.6044 37 1 1.6911 -2.4570 8.0713 38 1 3.4780 -4.5224 10.5413 39 1 1.9989 0.8617 9.6048 40 1 1.8461 1.7250 8.0557 41 1 -0.5642 0.0682 8.9464 42 1 -0.1267 2.8623 7.5903 43 1 -1.7474 2.0161 7.8319 44 1 -1.3781 2.0242 10.3414 45 1 0.2427 2.8708 10.0998 46 1 2.0570 -1.3633 4.0135 47 1 3.0594 -0.9659 0.9911 48 1 1.4589 -1.7155 1.2263 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880813959.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:24 Heat of formation + Delta-G solvation = 109.112310 kcal Electronic energy + Delta-G solvation = -29232.047520 eV Core-core repulsion = 25325.762575 eV Total energy + Delta-G solvation = -3906.284945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.64224 -39.75138 -38.05058 -37.23033 -34.71329 -34.15059 -32.81472 -32.36376 -30.61533 -28.53463 -27.74940 -27.33847 -26.15460 -24.64643 -23.20353 -22.33745 -22.19787 -21.12777 -20.60482 -19.44303 -18.87464 -17.45359 -16.93919 -16.49833 -16.29938 -16.01199 -15.41779 -15.21462 -15.04862 -14.89734 -14.70081 -14.31618 -14.05485 -13.79737 -13.39247 -13.25344 -12.87904 -12.85154 -12.42959 -12.35015 -12.16748 -12.11153 -11.89703 -11.67822 -11.53393 -11.45336 -11.20689 -10.89295 -10.61363 -10.52514 -10.38821 -10.32497 -10.08002 -9.88683 -9.61389 -9.18212 -8.87423 -8.52505 -8.41886 -8.03827 -7.60926 -6.02953 -4.07297 1.93075 2.21123 2.98386 3.22839 3.31760 3.38633 3.44141 3.55970 3.85584 4.00162 4.18365 4.35656 4.47162 4.52904 4.57331 4.74014 4.89661 4.98666 4.99766 5.05220 5.15321 5.22712 5.29597 5.31510 5.37868 5.40007 5.46504 5.59205 5.62655 5.68090 5.79492 5.88965 5.94470 5.96797 6.02856 6.16079 6.41994 6.48708 6.49410 6.54592 6.79633 7.08870 7.24723 7.31959 7.49469 7.57309 7.92897 8.01368 8.23967 8.59029 8.93369 9.22850 9.57984 11.04932 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011244 B = 0.003344 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.576184 B = 8371.835479 C =10176.195759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.535 5.535 3 C 0.040 3.960 4 C 0.105 3.895 5 N -0.375 5.375 6 N -0.332 5.332 7 C 0.330 3.670 8 N -0.654 5.654 9 C 0.709 3.291 10 O -0.560 6.560 11 N -0.601 5.601 12 C 0.262 3.738 13 C -0.527 4.527 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.281 1.281 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.141 3.859 22 C -0.167 4.167 23 C -0.185 4.185 24 C -0.174 4.174 25 C -0.241 4.241 26 C 0.042 3.958 27 C 0.118 3.882 28 H 0.033 0.967 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.404 0.596 36 H 0.036 0.964 37 H 0.046 0.954 38 H 0.263 0.737 39 H 0.094 0.906 40 H 0.060 0.940 41 H 0.111 0.889 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.177 0.823 47 H 0.103 0.897 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.064 13.065 -15.691 21.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.256 5.256 3 C -0.090 4.090 4 C -0.018 4.018 5 N -0.162 5.162 6 N -0.163 5.163 7 C 0.073 3.927 8 N -0.307 5.307 9 C 0.410 3.590 10 O -0.435 6.435 11 N -0.335 5.335 12 C 0.143 3.857 13 C -0.566 4.566 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.199 1.199 21 C 0.016 3.984 22 C -0.187 4.187 23 C -0.223 4.223 24 C -0.212 4.212 25 C -0.272 4.272 26 C -0.085 4.085 27 C -0.011 4.011 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.121 0.879 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.241 0.759 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.112 0.888 40 H 0.078 0.922 41 H 0.129 0.871 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.113 0.887 46 H 0.194 0.806 47 H 0.121 0.879 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.006 13.126 -16.522 22.234 hybrid contribution 0.714 0.122 1.489 1.656 sum -6.292 13.248 -15.033 21.002 Atomic orbital electron populations 1.22514 0.86773 1.03032 1.01018 1.62442 1.08799 1.12792 1.41580 1.22655 1.00929 0.88323 0.97080 1.22316 1.02610 0.95830 0.81066 1.47926 1.58197 1.06291 1.03780 1.77170 1.32331 1.20296 0.86456 1.19009 0.97077 0.92367 0.84266 1.42100 1.74329 1.12642 1.01671 1.15710 0.78513 0.82342 0.82420 1.90809 1.54860 1.30655 1.67194 1.47523 1.71654 1.11800 1.02508 1.19273 0.96361 0.79484 0.90616 1.21455 0.92856 1.06882 1.35359 0.92437 1.24908 0.98021 0.95390 0.95667 1.69932 1.34479 1.10615 1.38325 0.86507 0.85217 0.77302 0.78457 1.20704 1.21101 1.19911 1.21008 0.92039 0.86670 0.98645 1.22985 0.97048 0.94195 1.04438 1.23029 1.01866 1.01903 0.95451 1.22899 1.03264 1.01551 0.93439 1.21499 1.14500 1.01959 0.89259 1.21790 1.02683 0.86165 0.97899 1.21172 1.02554 0.95538 0.81882 0.94810 0.90976 0.90692 0.89319 0.87907 0.88923 0.90182 0.75889 0.94589 0.93571 0.92728 0.88800 0.92207 0.87129 0.89154 0.89113 0.88890 0.88690 0.80562 0.87892 0.87734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 8.88 60.06 0.53 0.65 16 2 N -0.53 -4.73 5.22 -243.57 -1.27 -6.00 16 3 C 0.04 0.29 5.98 -3.58 -0.02 0.27 16 4 C 0.11 0.97 6.55 -3.76 -0.02 0.95 16 5 N -0.38 -5.25 3.81 -56.83 -0.22 -5.47 16 6 N -0.33 -5.62 12.65 31.54 0.40 -5.22 16 7 C 0.33 6.09 8.12 -154.04 -1.25 4.84 16 8 N -0.65 -11.93 5.32 -15.39 -0.08 -12.01 16 9 C 0.71 15.44 8.25 -86.91 -0.72 14.72 16 10 O -0.56 -14.12 13.05 5.29 0.07 -14.05 16 11 N -0.60 -12.69 2.46 -180.80 -0.44 -13.14 16 12 C 0.26 6.71 5.16 -5.19 -0.03 6.68 16 13 C -0.53 -14.75 9.39 -34.44 -0.32 -15.08 16 14 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 17 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.14 2.30 5.45 -4.04 -0.02 2.28 16 22 C -0.17 -2.37 6.01 -90.62 -0.54 -2.91 16 23 C -0.19 -2.19 10.00 -26.73 -0.27 -2.46 16 24 C -0.17 -1.98 10.25 -26.74 -0.27 -2.25 16 25 C -0.24 -4.36 9.56 -40.00 -0.38 -4.74 16 26 C 0.04 0.60 6.04 -82.20 -0.50 0.10 16 27 C 0.12 1.24 6.17 -4.65 -0.03 1.22 16 28 H 0.03 0.33 5.89 -51.93 -0.31 0.03 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.59 8.03 -51.93 -0.42 0.17 16 31 H 0.09 0.67 8.07 -51.93 -0.42 0.25 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.67 6.99 -51.93 -0.36 0.31 16 35 H 0.40 6.36 6.10 -40.82 -0.25 6.11 16 36 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 37 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.09 1.57 8.07 -51.93 -0.42 1.15 16 40 H 0.06 0.85 6.10 -51.93 -0.32 0.54 16 41 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 42 H 0.09 1.00 7.76 -51.93 -0.40 0.59 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.18 3.56 5.92 -52.49 -0.31 3.25 16 47 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 48 H 0.10 1.03 7.95 -51.93 -0.41 0.62 16 LS Contribution 385.54 15.07 5.81 5.81 Total: -1.00 -33.85 385.54 -11.31 -45.17 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -7.35 Total: 7.73 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -3.94 Total: 5.92 kcal Atomic # 7 Polarization: -66.49 SS G_CDS: -0.88 Total: -67.37 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.07 Total: -14.05 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.85 -11.31 -45.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880813959.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.278 kcal (2) G-P(sol) polarization free energy of solvation -33.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds