Wall clock time and date at job start Tue Mar 31 2020 18:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46960 * 110.99565 * 2 1 4 4 C 1.53052 * 109.36552 * 183.18607 * 3 2 1 5 5 N 1.46958 * 109.36339 * 301.59849 * 4 3 2 6 6 C 1.46902 * 111.00399 * 183.18600 * 5 4 3 7 7 C 1.46960 * 110.88019 * 59.32011 * 5 4 3 8 8 H 1.09000 * 109.50970 * 60.66055 * 7 5 4 9 9 C 1.53004 * 109.48938 * 180.71367 * 7 5 4 10 10 N 1.46506 * 109.47185 * 54.12906 * 9 7 5 11 11 C 1.34766 * 119.99776 * 184.90655 * 10 9 7 12 12 O 1.21578 * 120.00428 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00048 * 180.02562 * 11 10 9 14 14 C 1.39239 * 120.00470 * 184.88833 * 13 11 10 15 15 C 1.39684 * 119.57924 * 174.27822 * 14 13 11 16 16 C 1.38650 * 119.49789 * 179.70528 * 15 14 13 17 17 C 1.38352 * 118.66736 * 0.55806 * 16 15 14 18 18 C 1.40577 * 119.13208 * 359.72945 * 17 16 15 19 19 C 1.41339 * 119.78510 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99796 * 359.97438 * 19 18 17 21 21 C 1.40028 * 119.99831 * 179.97438 * 19 18 17 22 22 N 1.30743 * 119.99902 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99715 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47539 * 60.00256 * 23 21 19 25 25 H 1.48502 * 109.46829 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47085 * 299.99399 * 23 21 19 27 27 N 1.31909 * 119.57340 * 354.55406 * 14 13 11 28 28 C 1.46958 * 111.00012 * 123.79622 * 2 1 3 29 29 H 1.08997 * 109.47623 * 296.20252 * 1 2 3 30 30 H 1.09002 * 109.47351 * 56.20923 * 1 2 3 31 31 H 1.09005 * 109.46861 * 176.19906 * 1 2 3 32 32 H 1.08994 * 109.48847 * 303.15465 * 3 2 1 33 33 H 1.09003 * 109.48815 * 63.22002 * 3 2 1 34 34 H 1.08991 * 109.49099 * 181.63162 * 4 3 2 35 35 H 1.09002 * 109.50730 * 61.57506 * 4 3 2 36 36 H 1.09005 * 109.47010 * 300.15095 * 6 5 4 37 37 H 1.09003 * 109.46696 * 60.13934 * 6 5 4 38 38 H 1.08993 * 109.47425 * 180.14964 * 6 5 4 39 39 H 1.08993 * 109.47373 * 174.13392 * 9 7 5 40 40 H 1.09002 * 109.46820 * 294.13487 * 9 7 5 41 41 H 0.96995 * 119.99863 * 4.91129 * 10 9 7 42 42 H 0.97000 * 119.99610 * 4.89429 * 13 11 10 43 43 H 1.08000 * 120.25159 * 0.02562 * 15 14 13 44 44 H 1.07997 * 120.66210 * 180.30736 * 16 15 14 45 45 H 1.07996 * 120.43366 * 179.74771 * 17 16 15 46 46 H 0.96994 * 120.00089 * 179.97438 * 22 21 19 47 47 H 1.09002 * 109.48707 * 296.78126 * 28 2 1 48 48 H 1.09000 * 109.48905 * 56.84728 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3720 0.0000 4 6 3.5233 1.3293 -0.0803 5 7 4.0500 0.5661 1.0599 6 6 5.5190 0.5662 1.0600 7 6 3.5234 -0.8059 1.0599 8 1 3.8254 -1.3117 0.1428 9 6 4.0769 -1.5651 2.2675 10 7 3.7899 -0.8122 3.4911 11 6 4.2715 -1.2409 4.6745 12 8 4.9437 -2.2526 4.7269 13 7 4.0071 -0.5486 5.8003 14 6 4.5873 -0.9326 7.0064 15 6 4.4044 -0.1409 8.1426 16 6 4.9778 -0.5282 9.3441 17 6 5.7287 -1.6897 9.3772 18 6 5.8810 -2.4401 8.1983 19 6 6.6456 -3.6286 8.2164 20 1 7.1110 -3.9574 9.1338 21 6 6.7997 -4.3798 7.0447 22 7 6.2368 -3.9815 5.9340 23 14 7.8097 -5.9511 7.0688 24 1 7.2119 -6.9091 8.0331 25 1 7.8188 -6.5544 5.7119 26 1 9.2019 -5.6383 7.4801 27 7 5.3072 -2.0366 7.0601 28 6 1.9956 -0.7631 1.1401 29 1 -0.3634 0.4537 0.9220 30 1 -0.3634 0.5716 -0.8541 31 1 -0.3633 -1.0255 -0.0681 32 1 1.6012 1.9129 -0.8602 33 1 1.6936 1.8774 0.9174 34 1 3.9176 2.3450 -0.0512 35 1 3.8256 0.8483 -1.0105 36 1 5.8824 0.1148 0.1368 37 1 5.8823 1.5915 1.1306 38 1 5.8823 -0.0077 1.9125 39 1 3.6069 -2.5467 2.3262 40 1 5.1549 -1.6843 2.1587 41 1 3.2533 -0.0053 3.4494 42 1 3.4125 0.2172 5.7704 43 1 3.8164 0.7633 8.0868 44 1 4.8444 0.0672 10.2352 45 1 6.1916 -2.0158 10.2969 46 1 6.3438 -4.5016 5.1223 47 1 1.6937 -0.2819 2.0704 48 1 1.6013 -1.7789 1.1111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881154415.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:25 Heat of formation + Delta-G solvation = 58.963274 kcal Electronic energy + Delta-G solvation = -29455.573255 eV Core-core repulsion = 25547.113684 eV Total energy + Delta-G solvation = -3908.459570 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.04994 -39.10010 -37.57370 -35.91457 -34.30577 -33.72994 -32.89048 -31.14984 -30.19597 -29.49543 -28.80763 -26.39345 -25.51789 -25.30964 -23.44571 -22.30592 -21.59144 -21.10976 -19.95513 -19.35047 -17.96159 -17.12998 -16.35027 -16.03962 -15.98509 -15.34136 -14.94898 -14.74778 -14.67134 -14.48815 -14.38111 -14.16016 -13.92545 -13.59201 -13.01166 -12.97824 -12.75653 -12.70361 -12.38089 -12.28375 -12.06651 -11.86115 -11.78498 -11.65665 -11.44465 -11.08738 -10.99097 -10.90700 -10.67573 -10.59218 -10.39064 -9.87875 -9.59855 -9.01033 -8.94352 -8.70614 -8.49357 -8.28558 -7.87372 -7.12379 -6.85021 -6.03304 -4.31924 2.92469 3.20643 3.20949 3.23018 3.33899 3.36182 3.61955 3.72371 4.12649 4.34497 4.55450 4.66772 4.77668 4.94578 4.98789 5.03293 5.07082 5.08476 5.23150 5.24701 5.36206 5.44236 5.50405 5.58125 5.60148 5.64724 5.79793 5.82469 5.93466 6.05615 6.13092 6.17467 6.55689 6.65005 6.67703 6.70834 6.84671 6.89366 6.90570 6.92482 7.15648 7.32297 7.48288 7.70357 7.85158 7.89007 8.25576 8.38558 8.78276 8.89767 9.13940 9.73100 10.35651 10.57330 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014537 B = 0.003127 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.614391 B = 8952.779803 C = 9968.846686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.056 3.944 4 C 0.057 3.943 5 N -0.536 5.536 6 C 0.022 3.978 7 C 0.075 3.925 8 H 0.062 0.938 9 C 0.153 3.847 10 N -0.748 5.748 11 C 0.663 3.337 12 O -0.467 6.467 13 N -0.674 5.674 14 C 0.389 3.611 15 C -0.359 4.359 16 C -0.036 4.036 17 C -0.309 4.309 18 C 0.271 3.729 19 C -0.427 4.427 20 H 0.081 0.919 21 C 0.057 3.943 22 N -0.647 5.647 23 Si 0.894 3.106 24 H -0.268 1.268 25 H -0.280 1.280 26 H -0.268 1.268 27 N -0.471 5.471 28 C 0.062 3.938 29 H 0.027 0.973 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.041 0.959 36 H 0.025 0.975 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.389 0.611 42 H 0.394 0.606 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.272 0.728 47 H 0.046 0.954 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.584 9.249 -14.815 19.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.073 4.073 4 C -0.071 4.071 5 N -0.261 5.261 6 C -0.126 4.126 7 C -0.034 4.034 8 H 0.080 0.920 9 C 0.027 3.973 10 N -0.409 5.409 11 C 0.361 3.639 12 O -0.332 6.332 13 N -0.322 5.322 14 C 0.149 3.851 15 C -0.385 4.385 16 C -0.060 4.060 17 C -0.332 4.332 18 C 0.146 3.854 19 C -0.457 4.457 20 H 0.099 0.901 21 C -0.173 4.173 22 N -0.265 5.265 23 Si 0.718 3.282 24 H -0.193 1.193 25 H -0.205 1.205 26 H -0.193 1.193 27 N -0.189 5.189 28 C -0.066 4.066 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.059 0.941 36 H 0.043 0.957 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.222 0.778 42 H 0.226 0.774 43 H 0.107 0.893 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.083 0.917 47 H 0.064 0.936 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.813 7.652 -15.823 19.234 hybrid contribution -0.313 0.770 0.680 1.074 sum -8.126 8.422 -15.143 19.138 Atomic orbital electron populations 1.22341 0.87057 1.02367 1.00519 1.62160 1.07932 1.13887 1.43154 1.22181 0.94643 0.89412 1.01023 1.22159 0.94247 0.98604 0.92135 1.62099 1.08432 1.13219 1.42345 1.22433 0.86539 1.02432 1.01194 1.21997 0.94274 0.89204 0.97895 0.91994 1.21021 1.00573 0.93892 0.81799 1.45100 1.59604 1.30734 1.05452 1.16450 0.82480 0.84877 0.80091 1.91381 1.37181 1.21236 1.83396 1.42557 1.50184 1.33109 1.06332 1.18347 0.92047 0.91868 0.82849 1.20443 1.18705 1.05133 0.94252 1.20536 0.94951 0.95214 0.95336 1.21610 1.11513 1.00622 0.99428 1.18390 0.89348 0.91907 0.85724 1.19525 1.25971 1.04216 0.95998 0.90124 1.26185 0.96371 0.98877 0.95852 1.70346 1.25811 1.31694 0.98698 0.86622 0.80991 0.82514 0.78036 1.19263 1.20480 1.19277 1.68711 1.12331 1.11640 1.26266 1.22215 0.93763 0.98799 0.91835 0.95454 0.91451 0.91253 0.90444 0.93875 0.90229 0.94073 0.95673 0.91469 0.90103 0.91650 0.91360 0.77760 0.77370 0.89256 0.88730 0.88688 0.91664 0.93565 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.60 60.06 0.58 0.77 16 2 N -0.55 -5.04 4.97 -242.75 -1.21 -6.25 16 3 C 0.06 0.46 5.62 -3.76 -0.02 0.44 16 4 C 0.06 0.50 5.62 -3.77 -0.02 0.47 16 5 N -0.54 -5.53 4.26 -234.72 -1.00 -6.53 16 6 C 0.02 0.23 9.25 60.07 0.56 0.79 16 7 C 0.08 0.81 2.22 -67.65 -0.15 0.66 16 8 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 9 C 0.15 2.09 4.63 -4.04 -0.02 2.07 16 10 N -0.75 -11.27 5.13 -65.22 -0.33 -11.61 16 11 C 0.66 13.75 8.52 -86.92 -0.74 13.01 16 12 O -0.47 -12.03 12.10 5.30 0.06 -11.96 16 13 N -0.67 -13.74 5.39 -15.79 -0.09 -13.82 16 14 C 0.39 9.74 7.43 -155.00 -1.15 8.59 16 15 C -0.36 -8.29 9.96 -38.89 -0.39 -8.68 16 16 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 17 C -0.31 -7.96 9.83 -38.66 -0.38 -8.34 16 18 C 0.27 7.81 6.55 -85.00 -0.56 7.25 16 19 C -0.43 -11.98 9.14 -37.73 -0.34 -12.33 16 20 H 0.08 2.12 7.85 -52.49 -0.41 1.70 16 21 C 0.06 1.52 5.50 -17.34 -0.10 1.43 16 22 N -0.65 -18.27 8.98 55.55 0.50 -17.77 16 23 Si 0.89 19.60 29.56 -169.99 -5.02 14.58 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 N -0.47 -13.53 5.74 -10.26 -0.06 -13.59 16 28 C 0.06 0.62 4.80 -3.77 -0.02 0.61 16 29 H 0.03 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.54 8.13 -51.93 -0.42 0.12 16 33 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.05 6.16 -51.93 -0.32 0.73 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 1.04 6.61 -51.93 -0.34 0.70 16 41 H 0.39 5.06 7.29 -40.82 -0.30 4.77 16 42 H 0.39 6.33 8.71 -40.82 -0.36 5.98 16 43 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 44 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 45 H 0.09 2.27 8.06 -52.49 -0.42 1.85 16 46 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 47 H 0.05 0.49 7.10 -51.93 -0.37 0.13 16 48 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 380.13 15.07 5.73 5.73 Total: -1.00 -33.12 380.13 -12.14 -45.27 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -7.57 Total: 10.47 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -3.15 Total: 5.50 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: -2.18 Total: -69.57 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.06 Total: -11.96 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.12 -12.14 -45.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881154415.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.229 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds