Wall clock time and date at job start Tue Mar 31 2020 18:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46960 * 110.99565 * 2 1 4 4 C 1.53052 * 109.36552 * 183.18607 * 3 2 1 5 5 N 1.46958 * 109.36339 * 301.59849 * 4 3 2 6 6 C 1.46902 * 111.00399 * 183.18600 * 5 4 3 7 7 C 1.46960 * 110.88019 * 59.32011 * 5 4 3 8 8 H 1.09000 * 109.50970 * 60.66055 * 7 5 4 9 9 C 1.53004 * 109.48938 * 180.71367 * 7 5 4 10 10 N 1.46506 * 109.47185 * 54.12906 * 9 7 5 11 11 C 1.34766 * 119.99776 * 184.90655 * 10 9 7 12 12 O 1.21578 * 120.00428 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00048 * 180.02562 * 11 10 9 14 14 C 1.39239 * 120.00470 * 184.88833 * 13 11 10 15 15 C 1.39684 * 119.57924 * 174.27822 * 14 13 11 16 16 C 1.38650 * 119.49789 * 179.70528 * 15 14 13 17 17 C 1.38352 * 118.66736 * 0.55806 * 16 15 14 18 18 C 1.40577 * 119.13208 * 359.72945 * 17 16 15 19 19 C 1.41339 * 119.78510 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99796 * 359.97438 * 19 18 17 21 21 C 1.40028 * 119.99831 * 179.97438 * 19 18 17 22 22 N 1.30743 * 119.99902 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99715 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47539 * 60.00256 * 23 21 19 25 25 H 1.48502 * 109.46829 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47085 * 299.99399 * 23 21 19 27 27 N 1.31909 * 119.57340 * 354.55406 * 14 13 11 28 28 C 1.46958 * 111.00012 * 123.79622 * 2 1 3 29 29 H 1.08997 * 109.47623 * 296.20252 * 1 2 3 30 30 H 1.09002 * 109.47351 * 56.20923 * 1 2 3 31 31 H 1.09005 * 109.46861 * 176.19906 * 1 2 3 32 32 H 1.08994 * 109.48847 * 303.15465 * 3 2 1 33 33 H 1.09003 * 109.48815 * 63.22002 * 3 2 1 34 34 H 1.08991 * 109.49099 * 181.63162 * 4 3 2 35 35 H 1.09002 * 109.50730 * 61.57506 * 4 3 2 36 36 H 1.09005 * 109.47010 * 300.15095 * 6 5 4 37 37 H 1.09003 * 109.46696 * 60.13934 * 6 5 4 38 38 H 1.08993 * 109.47425 * 180.14964 * 6 5 4 39 39 H 1.08993 * 109.47373 * 174.13392 * 9 7 5 40 40 H 1.09002 * 109.46820 * 294.13487 * 9 7 5 41 41 H 0.96995 * 119.99863 * 4.91129 * 10 9 7 42 42 H 0.97000 * 119.99610 * 4.89429 * 13 11 10 43 43 H 1.08000 * 120.25159 * 0.02562 * 15 14 13 44 44 H 1.07997 * 120.66210 * 180.30736 * 16 15 14 45 45 H 1.07996 * 120.43366 * 179.74771 * 17 16 15 46 46 H 0.96994 * 120.00089 * 179.97438 * 22 21 19 47 47 H 1.09002 * 109.48707 * 296.78126 * 28 2 1 48 48 H 1.09000 * 109.48905 * 56.84728 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3720 0.0000 4 6 3.5233 1.3293 -0.0803 5 7 4.0500 0.5661 1.0599 6 6 5.5190 0.5662 1.0600 7 6 3.5234 -0.8059 1.0599 8 1 3.8254 -1.3117 0.1428 9 6 4.0769 -1.5651 2.2675 10 7 3.7899 -0.8122 3.4911 11 6 4.2715 -1.2409 4.6745 12 8 4.9437 -2.2526 4.7269 13 7 4.0071 -0.5486 5.8003 14 6 4.5873 -0.9326 7.0064 15 6 4.4044 -0.1409 8.1426 16 6 4.9778 -0.5282 9.3441 17 6 5.7287 -1.6897 9.3772 18 6 5.8810 -2.4401 8.1983 19 6 6.6456 -3.6286 8.2164 20 1 7.1110 -3.9574 9.1338 21 6 6.7997 -4.3798 7.0447 22 7 6.2368 -3.9815 5.9340 23 14 7.8097 -5.9511 7.0688 24 1 7.2119 -6.9091 8.0331 25 1 7.8188 -6.5544 5.7119 26 1 9.2019 -5.6383 7.4801 27 7 5.3072 -2.0366 7.0601 28 6 1.9956 -0.7631 1.1401 29 1 -0.3634 0.4537 0.9220 30 1 -0.3634 0.5716 -0.8541 31 1 -0.3633 -1.0255 -0.0681 32 1 1.6012 1.9129 -0.8602 33 1 1.6936 1.8774 0.9174 34 1 3.9176 2.3450 -0.0512 35 1 3.8256 0.8483 -1.0105 36 1 5.8824 0.1148 0.1368 37 1 5.8823 1.5915 1.1306 38 1 5.8823 -0.0077 1.9125 39 1 3.6069 -2.5467 2.3262 40 1 5.1549 -1.6843 2.1587 41 1 3.2533 -0.0053 3.4494 42 1 3.4125 0.2172 5.7704 43 1 3.8164 0.7633 8.0868 44 1 4.8444 0.0672 10.2352 45 1 6.1916 -2.0158 10.2969 46 1 6.3438 -4.5016 5.1223 47 1 1.6937 -0.2819 2.0704 48 1 1.6013 -1.7789 1.1111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881154415.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:24 Heat of formation + Delta-G solvation = 34.679911 kcal Electronic energy + Delta-G solvation = -29456.626261 eV Core-core repulsion = 25547.113684 eV Total energy + Delta-G solvation = -3909.512576 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.25854 -40.49136 -39.32477 -36.80989 -35.89974 -35.20075 -34.77695 -32.33757 -32.08027 -30.66039 -30.19067 -27.71121 -27.06697 -26.24501 -24.25734 -23.88828 -23.10294 -22.51692 -21.49037 -20.39548 -19.74558 -18.77644 -18.00193 -17.11600 -16.91164 -16.52040 -16.25596 -16.17569 -15.93743 -15.72837 -15.67759 -15.45852 -15.25643 -14.88589 -14.60410 -14.50701 -14.31156 -13.71810 -13.62716 -13.42000 -13.15253 -13.08973 -12.84979 -12.76506 -12.70294 -12.53828 -12.40296 -12.29159 -12.26624 -11.77366 -11.76160 -11.57251 -11.43993 -10.82598 -10.80485 -9.87123 -9.74123 -9.44175 -9.27862 -9.06479 -8.73395 -7.98319 -6.37782 1.00986 1.31962 1.40829 1.52448 1.55897 1.88240 2.29118 2.63416 2.84674 2.91563 3.08495 3.48618 3.71430 3.84193 4.01894 4.11317 4.19962 4.26478 4.37595 4.38934 4.51223 4.53126 4.62232 4.64683 4.69281 4.74677 4.76323 4.79604 4.87310 4.91053 4.99075 4.99668 5.02798 5.05578 5.08677 5.10128 5.31174 5.69385 5.73690 5.89809 5.92100 5.94231 5.95934 6.08179 6.12111 6.14202 6.36215 6.46895 6.85895 7.11264 7.33501 8.09337 8.42612 8.62160 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014537 B = 0.003127 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.614391 B = 8952.779803 C = 9968.846686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.555 5.555 3 C 0.057 3.943 4 C 0.058 3.942 5 N -0.541 5.541 6 C 0.027 3.973 7 C 0.089 3.911 8 H 0.064 0.936 9 C 0.157 3.843 10 N -0.721 5.721 11 C 0.658 3.342 12 O -0.519 6.519 13 N -0.662 5.662 14 C 0.367 3.633 15 C -0.348 4.348 16 C -0.034 4.034 17 C -0.333 4.333 18 C 0.237 3.763 19 C -0.467 4.467 20 H 0.085 0.915 21 C 0.010 3.990 22 N -0.683 5.683 23 Si 0.973 3.027 24 H -0.261 1.261 25 H -0.275 1.275 26 H -0.261 1.261 27 N -0.506 5.506 28 C 0.067 3.933 29 H 0.027 0.973 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.040 0.960 34 H 0.094 0.906 35 H 0.039 0.961 36 H 0.031 0.969 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.403 0.597 42 H 0.415 0.585 43 H 0.130 0.870 44 H 0.137 0.863 45 H 0.103 0.897 46 H 0.268 0.732 47 H 0.040 0.960 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.746 10.952 -15.531 21.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.279 5.279 3 C -0.071 4.071 4 C -0.070 4.070 5 N -0.267 5.267 6 C -0.121 4.121 7 C -0.020 4.020 8 H 0.081 0.919 9 C 0.032 3.968 10 N -0.382 5.382 11 C 0.356 3.644 12 O -0.387 6.387 13 N -0.313 5.313 14 C 0.127 3.873 15 C -0.373 4.373 16 C -0.058 4.058 17 C -0.356 4.356 18 C 0.111 3.889 19 C -0.498 4.498 20 H 0.103 0.897 21 C -0.216 4.216 22 N -0.301 5.301 23 Si 0.794 3.206 24 H -0.185 1.185 25 H -0.199 1.199 26 H -0.186 1.186 27 N -0.225 5.225 28 C -0.062 4.062 29 H 0.045 0.955 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.058 0.942 34 H 0.112 0.888 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.239 0.761 42 H 0.251 0.749 43 H 0.148 0.852 44 H 0.155 0.845 45 H 0.122 0.878 46 H 0.079 0.921 47 H 0.059 0.941 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.034 9.434 -16.568 21.098 hybrid contribution -0.065 0.437 0.891 0.995 sum -9.100 9.871 -15.677 20.640 Atomic orbital electron populations 1.22383 0.85934 1.02782 1.01130 1.62176 1.08998 1.14383 1.42378 1.22229 0.94190 0.88996 1.01685 1.22226 0.94647 0.98928 0.91155 1.62113 1.08190 1.12795 1.43560 1.22337 0.86867 1.02635 1.00235 1.21804 0.94866 0.89334 0.96045 0.91859 1.21029 0.99574 0.94003 0.82236 1.44789 1.58390 1.30824 1.04180 1.16709 0.82131 0.84378 0.81176 1.91374 1.39482 1.23549 1.84281 1.42401 1.50076 1.33611 1.05167 1.18837 0.91918 0.91603 0.84926 1.20911 1.17472 1.05624 0.93310 1.21014 0.93307 0.94439 0.97034 1.21797 1.12924 1.01835 0.98998 1.18886 0.90091 0.92931 0.86954 1.19860 1.27624 1.05414 0.96918 0.89721 1.27037 0.97317 1.02211 0.95050 1.70559 1.27430 1.33073 0.99073 0.85414 0.79175 0.77800 0.78174 1.18501 1.19927 1.18576 1.68669 1.13528 1.13497 1.26846 1.22116 0.92874 0.99056 0.92125 0.95467 0.90038 0.91142 0.88617 0.94199 0.88783 0.94238 0.95072 0.90336 0.92907 0.92571 0.93249 0.76081 0.74855 0.85211 0.84543 0.87836 0.92078 0.94136 0.90041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.60 127.69 1.23 1.56 16 2 N -0.55 -9.08 4.97 -921.92 -4.58 -13.66 16 3 C 0.06 0.80 5.62 86.31 0.49 1.29 16 4 C 0.06 0.88 5.62 86.31 0.49 1.37 16 5 N -0.54 -10.46 4.26 -896.53 -3.81 -14.28 16 6 C 0.03 0.56 9.25 127.69 1.18 1.74 16 7 C 0.09 1.85 2.22 44.92 0.10 1.95 16 8 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 9 C 0.16 4.40 4.63 86.38 0.40 4.80 16 10 N -0.72 -21.78 5.13 -478.54 -2.46 -24.23 16 11 C 0.66 27.81 8.52 179.06 1.53 29.34 16 12 O -0.52 -27.90 12.10 -3.96 -0.05 -27.94 16 13 N -0.66 -26.73 5.39 -322.12 -1.74 -28.46 16 14 C 0.37 18.36 7.43 133.26 0.99 19.35 16 15 C -0.35 -15.27 9.96 22.72 0.23 -15.04 16 16 C -0.03 -1.51 10.15 22.40 0.23 -1.28 16 17 C -0.33 -17.25 9.83 22.87 0.22 -17.03 16 18 C 0.24 14.07 6.55 40.19 0.26 14.33 16 19 C -0.47 -27.31 9.14 23.47 0.21 -27.09 16 20 H 0.08 4.62 7.85 -2.91 -0.02 4.60 16 21 C 0.01 0.54 5.50 85.29 0.47 1.01 16 22 N -0.68 -40.38 8.98 21.84 0.20 -40.18 16 23 Si 0.97 41.70 29.56 68.60 2.03 43.73 16 24 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 26 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 27 N -0.51 -29.96 5.74 -186.36 -1.07 -31.03 16 28 C 0.07 1.26 4.80 86.31 0.41 1.67 16 29 H 0.03 0.35 8.14 -2.39 -0.02 0.34 16 30 H 0.08 0.83 8.13 -2.39 -0.02 0.81 16 31 H 0.07 0.89 8.14 -2.38 -0.02 0.88 16 32 H 0.10 1.02 8.13 -2.39 -0.02 1.00 16 33 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.03 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.05 1.40 6.16 -2.39 -0.01 1.38 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.05 1.60 6.61 -2.39 -0.02 1.58 16 41 H 0.40 10.04 7.29 -92.71 -0.68 9.36 16 42 H 0.41 12.58 8.71 -92.71 -0.81 11.77 16 43 H 0.13 4.59 8.06 -2.91 -0.02 4.56 16 44 H 0.14 4.87 8.06 -2.91 -0.02 4.85 16 45 H 0.10 5.00 8.06 -2.91 -0.02 4.98 16 46 H 0.27 15.05 8.29 -92.71 -0.77 14.28 16 47 H 0.04 0.81 7.10 -2.39 -0.02 0.79 16 48 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -75.26 380.13 -3.55 -78.81 By element: Atomic # 1 Polarization: 39.80 SS G_CDS: -0.51 Total: 39.29 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 8.43 Total: 17.96 kcal Atomic # 7 Polarization: -138.39 SS G_CDS: -13.46 Total: -151.84 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.05 Total: -27.94 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -75.26 -3.55 -78.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881154415.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.490 kcal (2) G-P(sol) polarization free energy of solvation -75.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds