Wall clock time and date at job start Tue Mar 31 2020 17:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46495 * 109.47082 * 2 1 4 4 N 1.28709 * 126.04276 * 268.69985 * 3 2 1 5 5 N 1.28510 * 110.64124 * 180.02562 * 4 3 2 6 6 C 1.33322 * 109.44170 * 359.97438 * 5 4 3 7 7 C 1.37003 * 106.37040 * 0.02562 * 6 5 4 8 8 C 1.47235 * 127.19161 * 179.73767 * 7 6 5 9 9 O 1.21618 * 120.00038 * 207.58318 * 8 7 6 10 10 N 1.34776 * 119.99439 * 27.58526 * 8 7 6 11 11 C 1.43504 * 122.54996 * 4.27892 * 10 8 7 12 12 C 1.52194 * 113.97136 * 122.91218 * 11 10 8 13 13 C 1.51158 * 111.77021 * 82.86565 * 12 11 10 14 14 H 1.09003 * 110.22560 * 33.56875 * 13 12 11 15 15 C 1.53398 * 110.93524 * 156.63584 * 13 12 11 16 16 N 1.46621 * 108.10690 * 102.74617 * 15 13 12 17 17 C 1.36930 * 125.32252 * 178.61486 * 16 15 13 18 18 H 1.08007 * 120.00496 * 0.02562 * 17 16 15 19 19 C 1.38817 * 120.00195 * 179.97438 * 17 16 15 20 20 N 1.31611 * 119.99572 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00151 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46943 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47138 * 120.00222 * 21 19 17 24 24 H 1.48499 * 109.47328 * 240.00156 * 21 19 17 25 25 C 1.46661 * 109.35354 * 358.64303 * 16 15 13 26 26 C 1.54041 * 106.94360 * 18.29737 * 25 16 15 27 27 H 1.09006 * 111.48181 * 91.53942 * 26 25 16 28 28 C 1.51847 * 109.45237 * 214.13342 * 26 25 16 29 29 C 1.49558 * 122.54147 * 184.57120 * 10 8 7 30 30 H 1.09005 * 109.47057 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47148 * 299.99726 * 1 2 3 32 32 H 1.09003 * 109.46883 * 59.99592 * 1 2 3 33 33 H 1.09007 * 109.47056 * 240.00184 * 2 1 3 34 34 H 1.09000 * 109.47023 * 120.00923 * 2 1 3 35 35 H 1.07999 * 126.81664 * 180.02562 * 6 5 4 36 36 H 1.09003 * 108.52533 * 244.19269 * 11 10 8 37 37 H 1.09004 * 108.52405 * 1.71837 * 11 10 8 38 38 H 1.09000 * 109.13760 * 322.22838 * 12 11 10 39 39 H 1.08996 * 108.91385 * 203.35533 * 12 11 10 40 40 H 1.09002 * 109.74444 * 222.41469 * 15 13 12 41 41 H 1.08996 * 109.74698 * 343.07155 * 15 13 12 42 42 H 0.97003 * 119.99688 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.96204 * 258.92844 * 25 16 15 44 44 H 1.08999 * 109.96788 * 137.67545 * 25 16 15 45 45 H 1.08999 * 109.00325 * 54.29539 * 28 26 25 46 46 H 1.08995 * 108.94726 * 295.47186 * 28 26 25 47 47 H 1.08995 * 110.26591 * 9.13568 * 29 10 8 48 48 H 1.08998 * 110.26766 * 131.09800 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2930 2.0873 -1.0404 5 7 2.6992 3.2578 -0.6992 6 6 2.7019 3.3565 0.6303 7 6 2.2636 2.1495 1.1080 8 6 2.0966 1.7577 2.5174 9 8 2.1925 0.5887 2.8390 10 7 1.8374 2.6945 3.4510 11 6 1.6245 4.0749 3.1214 12 6 0.2879 4.6253 3.5978 13 6 0.3414 5.0508 5.0473 14 1 1.3302 5.4404 5.2894 15 6 -0.7433 6.0914 5.3534 16 7 -1.8355 5.4163 6.0612 17 6 -2.9723 6.0226 6.5252 18 1 -3.1171 7.0829 6.3791 19 6 -3.9392 5.2743 7.1826 20 7 -3.7630 3.9821 7.3602 21 14 -5.4902 6.1012 7.8149 22 1 -5.4466 7.5496 7.4900 23 1 -6.6777 5.4852 7.1701 24 1 -5.5797 5.9261 9.2868 25 6 -1.5199 3.9904 6.1951 26 6 -0.0034 3.8431 5.9688 27 1 0.5482 3.9068 6.9069 28 6 0.2784 2.5226 5.2740 29 6 1.7562 2.3755 4.9099 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8933 -0.5140 0.8899 35 1 2.9920 4.2170 1.2149 36 1 2.4248 4.6650 3.5679 37 1 1.6805 4.1849 2.0384 38 1 -0.4767 3.8572 3.4815 39 1 0.0217 5.4863 2.9848 40 1 -0.3297 6.8805 5.9814 41 1 -1.1163 6.5192 4.4229 42 1 -4.4385 3.4593 7.8199 43 1 -2.0655 3.4165 5.4459 44 1 -1.7827 3.6432 7.1943 45 1 -0.3189 2.4659 4.3640 46 1 -0.0069 1.7059 5.9370 47 1 2.0901 1.3541 5.0922 48 1 2.3605 3.0778 5.4842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946580748.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:49 Heat of formation + Delta-G solvation = 108.665674 kcal Electronic energy + Delta-G solvation = -30061.450509 eV Core-core repulsion = 26155.146197 eV Total energy + Delta-G solvation = -3906.304313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.59786 -40.41905 -38.61441 -36.35013 -35.52537 -33.40598 -32.66550 -31.40126 -31.10256 -30.65494 -27.72674 -27.49782 -25.28087 -24.53711 -23.66872 -23.32717 -22.65888 -21.81488 -20.16868 -19.81421 -18.41022 -17.70273 -17.49284 -16.95691 -16.63257 -16.25258 -15.62032 -15.21302 -15.02601 -14.53564 -14.32938 -14.10731 -14.04187 -13.64720 -13.32644 -13.08287 -12.97051 -12.70124 -12.57551 -12.37764 -12.25709 -11.95914 -11.73977 -11.52508 -11.28392 -11.25306 -11.15406 -10.93388 -10.82830 -10.73088 -10.48724 -10.33109 -10.04871 -10.01395 -9.79844 -9.75208 -9.61690 -9.45008 -8.82912 -8.61582 -6.83493 -5.69689 -3.08262 0.72755 1.75335 2.06636 2.66389 2.79235 3.37523 3.43438 3.45667 3.98533 4.12764 4.38155 4.47364 4.47883 4.62759 4.68944 4.83050 4.93633 4.96955 5.05268 5.18486 5.21359 5.23670 5.32988 5.45863 5.47400 5.51704 5.57701 5.65264 5.67784 5.69120 5.75323 5.90633 6.01213 6.09743 6.14118 6.23106 6.31887 6.35631 6.51126 6.57634 6.63127 6.74466 6.98536 7.18683 7.52385 7.63710 7.73017 7.83773 8.10677 8.32711 9.21854 9.82795 10.46340 11.36249 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018146 B = 0.002929 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.676106 B = 9555.977520 C = 9702.723406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.101 3.899 3 N -0.253 5.253 4 N -0.061 5.061 5 N -0.273 5.273 6 C -0.008 4.008 7 C -0.062 4.062 8 C 0.600 3.400 9 O -0.536 6.536 10 N -0.588 5.588 11 C 0.082 3.918 12 C -0.126 4.126 13 C -0.092 4.092 14 H 0.068 0.932 15 C 0.142 3.858 16 N -0.602 5.602 17 C -0.224 4.224 18 H 0.078 0.922 19 C -0.010 4.010 20 N -0.921 5.921 21 Si 0.912 3.088 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.170 3.830 26 C -0.109 4.109 27 H 0.068 0.932 28 C -0.126 4.126 29 C 0.118 3.882 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.123 0.877 35 H 0.205 0.795 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.020 0.980 41 H 0.021 0.979 42 H 0.251 0.749 43 H 0.013 0.987 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.090 0.910 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.880 -5.996 -11.010 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.019 4.019 3 N -0.050 5.050 4 N -0.041 5.041 5 N -0.136 5.136 6 C -0.167 4.167 7 C -0.197 4.197 8 C 0.386 3.614 9 O -0.414 6.414 10 N -0.320 5.320 11 C -0.042 4.042 12 C -0.164 4.164 13 C -0.111 4.111 14 H 0.086 0.914 15 C 0.016 3.984 16 N -0.328 5.328 17 C -0.353 4.353 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.570 5.570 21 Si 0.743 3.257 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.217 1.217 25 C 0.045 3.955 26 C -0.129 4.129 27 H 0.087 0.913 28 C -0.164 4.164 29 C -0.002 4.002 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.128 0.872 34 H 0.141 0.859 35 H 0.222 0.778 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.038 0.962 41 H 0.039 0.961 42 H 0.061 0.939 43 H 0.031 0.969 44 H 0.107 0.893 45 H 0.092 0.908 46 H 0.088 0.912 47 H 0.109 0.891 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.772 -6.690 -12.307 19.644 hybrid contribution -1.002 0.439 1.458 1.822 sum 12.770 -6.251 -10.849 17.885 Atomic orbital electron populations 1.22142 0.92487 1.04328 1.03642 1.22453 0.96791 0.75737 1.06948 1.47896 1.40298 1.13544 1.03290 1.78243 1.14967 0.99260 1.11667 1.74921 1.16351 1.09857 1.12465 1.24138 1.03362 0.97377 0.91873 1.21960 1.12808 0.93975 0.90931 1.16562 0.77337 0.85152 0.82363 1.90789 1.52075 1.17218 1.81276 1.47721 1.67979 1.08680 1.07580 1.21534 0.98999 0.81469 1.02192 1.21549 0.96356 1.01622 0.96847 1.21809 0.98636 0.96735 0.93963 0.91407 1.21114 0.88575 0.93682 0.95009 1.44205 1.18381 1.04540 1.65692 1.19116 0.93936 0.92797 1.29434 0.90463 1.24787 0.98824 0.95780 1.01188 1.69898 1.34648 1.04976 1.47471 0.86032 0.82992 0.78350 0.78337 1.20520 1.21796 1.21747 1.21410 0.86627 0.85117 1.02352 1.22453 1.01050 0.92271 0.97135 0.91314 1.21857 0.94449 0.98555 1.01579 1.22431 0.98111 1.02405 0.77246 0.89253 0.91430 0.91326 0.87231 0.85920 0.77816 0.91088 0.89304 0.90546 0.90711 0.96170 0.96145 0.93858 0.96864 0.89283 0.90795 0.91158 0.89140 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 10.24 37.16 0.38 -0.96 16 2 C 0.10 0.86 6.86 -4.04 -0.03 0.84 16 3 N -0.25 -2.91 3.39 -57.37 -0.19 -3.11 16 4 N -0.06 -0.79 13.14 60.35 0.79 0.00 16 5 N -0.27 -3.57 12.35 30.47 0.38 -3.19 16 6 C -0.01 -0.08 9.83 -17.35 -0.17 -0.25 16 7 C -0.06 -0.73 6.54 -82.33 -0.54 -1.27 16 8 C 0.60 7.51 7.62 -12.61 -0.10 7.42 16 9 O -0.54 -7.80 14.91 5.26 0.08 -7.72 16 10 N -0.59 -6.69 2.61 -175.36 -0.46 -7.15 16 11 C 0.08 0.82 4.97 -6.04 -0.03 0.79 16 12 C -0.13 -1.63 4.79 -28.07 -0.13 -1.76 16 13 C -0.09 -1.39 2.79 -89.86 -0.25 -1.64 16 14 H 0.07 0.87 7.67 -51.93 -0.40 0.47 16 15 C 0.14 2.78 6.82 -3.77 -0.03 2.75 16 16 N -0.60 -14.85 3.38 -172.12 -0.58 -15.43 16 17 C -0.22 -6.14 10.25 -15.06 -0.15 -6.29 16 18 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 19 C -0.01 -0.28 5.48 -17.43 -0.10 -0.38 16 20 N -0.92 -26.43 10.16 55.49 0.56 -25.86 16 21 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 C 0.17 3.90 5.13 -3.41 -0.02 3.88 16 26 C -0.11 -1.83 2.94 -89.18 -0.26 -2.09 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 28 C -0.13 -1.79 4.50 -27.36 -0.12 -1.92 16 29 C 0.12 1.37 6.15 -2.39 -0.01 1.35 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.12 1.11 6.41 -51.93 -0.33 0.78 16 35 H 0.21 1.58 6.24 -52.49 -0.33 1.25 16 36 H 0.07 0.59 7.68 -51.93 -0.40 0.19 16 37 H 0.09 0.81 3.61 -51.93 -0.19 0.63 16 38 H 0.08 1.18 5.87 -51.93 -0.30 0.88 16 39 H 0.07 0.93 7.53 -51.93 -0.39 0.54 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.02 0.40 7.40 -51.93 -0.38 0.02 16 42 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.01 0.34 7.72 -51.93 -0.40 -0.06 16 44 H 0.09 2.35 6.19 -51.93 -0.32 2.03 16 45 H 0.07 1.16 5.47 -51.93 -0.28 0.88 16 46 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.09 1.05 7.34 -51.93 -0.38 0.67 16 48 H 0.08 0.85 7.82 -51.93 -0.41 0.45 16 LS Contribution 365.79 15.07 5.51 5.51 Total: -1.00 -32.44 365.79 -7.52 -39.96 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -7.02 Total: -0.27 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -1.56 Total: 0.46 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.50 Total: -54.73 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.08 Total: -7.72 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.44 -7.52 -39.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946580748.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.624 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds