Wall clock time and date at job start Tue Mar 31 2020 18:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28712 * 126.03233 * 2 1 4 4 N 1.28520 * 110.63804 * 179.97438 * 3 2 1 5 5 C 1.33319 * 109.43802 * 359.97438 * 4 3 2 6 6 C 1.37011 * 106.37191 * 359.77550 * 5 4 3 7 7 C 1.47228 * 127.18974 * 180.23879 * 6 5 4 8 8 O 1.21622 * 120.00101 * 199.92237 * 7 6 5 9 9 N 1.34781 * 120.00112 * 19.92544 * 7 6 5 10 10 C 1.46923 * 120.64067 * 6.33358 * 9 7 6 11 11 C 1.53624 * 108.54048 * 126.32723 * 10 9 7 12 12 C 1.53045 * 109.26387 * 54.86346 * 11 10 9 13 13 C 1.53028 * 109.43720 * 58.57312 * 12 11 10 14 14 C 1.53185 * 109.33745 * 181.23125 * 13 12 11 15 15 N 1.46927 * 108.78181 * 305.37879 * 14 13 12 16 16 C 1.36939 * 120.64483 * 233.61219 * 15 14 13 17 17 H 1.08000 * 119.99778 * 30.88051 * 16 15 14 18 18 C 1.38816 * 120.00168 * 210.87950 * 16 15 14 19 19 N 1.31618 * 119.99898 * 10.08324 * 18 16 15 20 20 Si 1.86797 * 119.99778 * 190.08262 * 18 16 15 21 21 H 1.48502 * 109.46987 * 89.99960 * 20 18 16 22 22 H 1.48499 * 109.46878 * 209.99834 * 20 18 16 23 23 H 1.48500 * 109.47211 * 329.99727 * 20 18 16 24 24 C 1.46925 * 118.71466 * 53.63433 * 15 14 13 25 25 C 1.53039 * 109.39470 * 178.60147 * 12 11 10 26 26 C 1.53034 * 109.54472 * 298.56962 * 12 11 10 27 27 C 1.46929 * 120.64284 * 186.61121 * 9 7 6 28 28 H 1.09004 * 109.46927 * 85.57517 * 1 2 3 29 29 H 1.08994 * 109.47210 * 205.57329 * 1 2 3 30 30 H 1.09001 * 109.47046 * 325.57570 * 1 2 3 31 31 H 1.08000 * 126.81565 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.58932 * 246.15473 * 10 9 7 33 33 H 1.09001 * 109.59001 * 6.58628 * 10 9 7 34 34 H 1.08999 * 109.62458 * 294.86692 * 11 10 9 35 35 H 1.09006 * 109.42916 * 174.74230 * 11 10 9 36 36 H 1.09004 * 109.49788 * 301.19655 * 13 12 11 37 37 H 1.09008 * 109.49498 * 61.27432 * 13 12 11 38 38 H 1.09000 * 109.58900 * 185.58576 * 14 13 12 39 39 H 1.09002 * 109.69774 * 65.23621 * 14 13 12 40 40 H 0.96996 * 119.99878 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.59107 * 186.57159 * 24 15 14 42 42 H 1.09007 * 109.70738 * 66.21666 * 24 15 14 43 43 H 1.08998 * 109.49441 * 298.69525 * 25 12 11 44 44 H 1.09000 * 109.49328 * 58.77625 * 25 12 11 45 45 H 1.09006 * 109.49186 * 301.33279 * 26 12 11 46 46 H 1.08996 * 109.48907 * 181.25831 * 26 12 11 47 47 H 1.08989 * 109.58798 * 353.40738 * 27 9 7 48 48 H 1.09006 * 109.58220 * 113.69010 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2221 1.0409 0.0000 4 7 3.4612 0.6997 0.0005 5 6 3.5552 -0.6302 0.0015 6 6 2.2712 -1.1081 0.0067 7 6 1.8463 -2.5177 0.0145 8 8 0.7219 -2.8159 -0.3405 9 7 2.7033 -3.4777 0.4150 10 6 4.0142 -3.1244 0.9766 11 6 4.1630 -3.8139 2.3413 12 6 3.9364 -5.3183 2.1743 13 6 4.9478 -5.8773 1.1712 14 6 4.6992 -7.3770 0.9825 15 7 4.7298 -8.0307 2.2980 16 6 5.5526 -9.1013 2.5264 17 1 6.4925 -9.1818 2.0006 18 6 5.1786 -10.0829 3.4339 19 7 3.9576 -10.0943 3.9251 20 14 6.4084 -11.3877 3.9579 21 1 7.1518 -10.9154 5.1536 22 1 5.6875 -12.6435 4.2873 23 1 7.3635 -11.6413 2.8495 24 6 3.8601 -7.5139 3.3635 25 6 4.1182 -6.0127 3.5259 26 6 2.5169 -5.5682 1.6599 27 6 2.3473 -4.8980 0.2930 28 1 -0.3633 0.0793 -1.0246 29 1 -0.3633 -0.9269 0.4436 30 1 -0.3633 0.8477 0.5810 31 1 4.4633 -1.2148 0.0017 32 1 4.8029 -3.4634 0.3050 33 1 4.0784 -2.0436 1.1028 34 1 3.4277 -3.4104 3.0375 35 1 5.1664 -3.6380 2.7290 36 1 4.8325 -5.3663 0.2152 37 1 5.9586 -5.7207 1.5481 38 1 5.4772 -7.7992 0.3465 39 1 3.7247 -7.5325 0.5197 40 1 3.6964 -10.7800 4.5594 41 1 4.0843 -8.0265 4.2990 42 1 2.8158 -7.6785 3.0978 43 1 5.1363 -5.8550 3.8818 44 1 3.4125 -5.5981 4.2457 45 1 1.7964 -5.1492 2.3625 46 1 2.3490 -6.6407 1.5626 47 1 1.3109 -4.9882 -0.0321 48 1 3.0017 -5.3774 -0.4351 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957544032.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:29 Heat of formation + Delta-G solvation = 105.874174 kcal Electronic energy + Delta-G solvation = -30142.324826 eV Core-core repulsion = 26235.899465 eV Total energy + Delta-G solvation = -3906.425361 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.65688 -40.61950 -38.80490 -36.26235 -34.91567 -33.75851 -32.32916 -31.39347 -30.51157 -30.01439 -28.50585 -27.99779 -25.50883 -24.40594 -23.68167 -23.08764 -22.27842 -21.92429 -20.78651 -19.81023 -18.09046 -17.51030 -17.33892 -17.08656 -16.52189 -16.18712 -15.35412 -14.94362 -14.82873 -14.45583 -14.16043 -14.08402 -13.78875 -13.68150 -13.66066 -13.32262 -13.23402 -12.95096 -12.80702 -12.59073 -11.90120 -11.71216 -11.50114 -11.43774 -11.37826 -11.22904 -11.08611 -10.79307 -10.61903 -10.51053 -10.45486 -10.33560 -10.14614 -10.04545 -9.84662 -9.64451 -9.53741 -9.42722 -8.71364 -8.47442 -6.61768 -5.79563 -3.27258 0.64282 1.73927 1.98495 2.67963 2.78032 3.35323 3.42298 3.43171 3.90069 4.06155 4.38083 4.46842 4.56137 4.68048 4.69564 4.90312 4.94798 5.01576 5.14251 5.21023 5.27361 5.33385 5.38996 5.42914 5.56484 5.57230 5.69930 5.75238 5.84339 5.96045 6.00027 6.02188 6.04498 6.17047 6.27447 6.32916 6.45964 6.51359 6.63243 6.66478 6.80531 6.87934 6.97058 7.07664 7.38629 7.70603 7.71648 7.77779 8.02630 8.46695 9.21676 9.83361 10.40842 11.27865 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.031938 B = 0.002664 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.482877 B =10506.430177 C =10805.023677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.257 5.257 3 N -0.063 5.063 4 N -0.272 5.272 5 C -0.012 4.012 6 C -0.062 4.062 7 C 0.592 3.408 8 O -0.540 6.540 9 N -0.584 5.584 10 C 0.075 3.925 11 C -0.123 4.123 12 C -0.047 4.047 13 C -0.126 4.126 14 C 0.145 3.855 15 N -0.591 5.591 16 C -0.251 4.251 17 H 0.063 0.937 18 C 0.003 3.997 19 N -0.906 5.906 20 Si 0.904 3.096 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.171 3.829 25 C -0.130 4.130 26 C -0.124 4.124 27 C 0.114 3.886 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.211 0.789 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.050 0.950 39 H 0.018 0.982 40 H 0.253 0.747 41 H 0.088 0.912 42 H 0.019 0.981 43 H 0.055 0.945 44 H 0.045 0.955 45 H 0.059 0.941 46 H 0.094 0.906 47 H 0.090 0.910 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.414 17.733 -6.368 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.053 5.053 3 N -0.044 5.044 4 N -0.135 5.135 5 C -0.172 4.172 6 C -0.197 4.197 7 C 0.377 3.623 8 O -0.418 6.418 9 N -0.316 5.316 10 C -0.047 4.047 11 C -0.161 4.161 12 C -0.048 4.048 13 C -0.165 4.165 14 C 0.018 3.982 15 N -0.314 5.314 16 C -0.380 4.380 17 H 0.081 0.919 18 C -0.195 4.195 19 N -0.550 5.550 20 Si 0.734 3.266 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.205 1.205 24 C 0.045 3.955 25 C -0.170 4.170 26 C -0.162 4.162 27 C -0.007 4.007 28 H 0.116 0.884 29 H 0.130 0.870 30 H 0.120 0.880 31 H 0.228 0.772 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.036 0.964 40 H 0.064 0.936 41 H 0.106 0.894 42 H 0.037 0.963 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.112 0.888 47 H 0.109 0.891 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.088 18.959 -6.451 20.662 hybrid contribution 0.495 -1.850 0.399 1.956 sum -4.593 17.109 -6.052 18.720 Atomic orbital electron populations 1.22502 0.71395 1.06526 1.05733 1.47644 1.09886 1.03442 1.44326 1.78270 0.96772 1.11489 1.17820 1.74935 1.09122 1.12574 1.16879 1.24389 0.97182 0.91825 1.03813 1.22011 0.91610 0.90954 1.15119 1.16701 0.84750 0.82549 0.78287 1.90804 1.19085 1.82524 1.49403 1.47820 1.17092 1.06550 1.60110 1.22778 0.84120 1.01569 0.96269 1.22103 1.02351 0.96338 0.95347 1.20400 0.94522 0.92660 0.97172 1.22160 0.98452 0.98763 0.97127 1.20924 0.98078 0.90213 0.88972 1.43989 1.47913 1.33878 1.05613 1.19185 0.97873 0.97942 1.23039 0.91897 1.25141 0.95729 0.97280 1.01369 1.69959 1.16434 1.35214 1.33423 0.86272 0.80494 0.81245 0.78621 1.21486 1.21722 1.20467 1.20813 0.92475 0.87791 0.94415 1.22242 1.00494 1.00099 0.94120 1.22044 0.96928 1.02213 0.95011 1.21854 1.02317 0.77654 0.98901 0.88408 0.87018 0.87953 0.77234 0.89945 0.88259 0.91888 0.90526 0.93094 0.92252 0.93165 0.96384 0.93647 0.89412 0.96298 0.92672 0.93587 0.92180 0.88818 0.89115 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.56 10.92 59.85 0.65 1.21 16 2 N -0.26 -2.74 3.79 -64.12 -0.24 -2.98 16 3 N -0.06 -0.76 13.14 60.35 0.79 0.03 16 4 N -0.27 -3.37 12.35 30.47 0.38 -3.00 16 5 C -0.01 -0.13 9.79 -17.35 -0.17 -0.30 16 6 C -0.06 -0.69 6.65 -82.33 -0.55 -1.24 16 7 C 0.59 7.20 7.57 -12.61 -0.10 7.10 16 8 O -0.54 -7.73 14.66 5.26 0.08 -7.66 16 9 N -0.58 -6.56 2.97 -173.85 -0.52 -7.08 16 10 C 0.07 0.70 4.81 -3.49 -0.02 0.68 16 11 C -0.12 -1.38 4.92 -26.38 -0.13 -1.51 16 12 C -0.05 -0.67 0.51 -154.43 -0.08 -0.75 16 13 C -0.13 -1.87 4.14 -26.62 -0.11 -1.98 16 14 C 0.14 2.75 6.04 -3.71 -0.02 2.73 16 15 N -0.59 -13.86 2.99 -172.32 -0.52 -14.37 16 16 C -0.25 -6.61 9.59 -15.06 -0.14 -6.76 16 17 H 0.06 1.64 7.85 -52.49 -0.41 1.23 16 18 C 0.00 0.09 5.07 -17.43 -0.09 0.00 16 19 N -0.91 -25.51 10.98 55.49 0.61 -24.90 16 20 Si 0.90 21.24 29.57 -169.99 -5.03 16.21 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 C 0.17 3.80 4.79 -3.72 -0.02 3.78 16 25 C -0.13 -2.26 4.90 -26.62 -0.13 -2.39 16 26 C -0.12 -1.74 4.15 -26.62 -0.11 -1.85 16 27 C 0.11 1.40 5.97 -3.71 -0.02 1.38 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.11 0.85 6.72 -51.93 -0.35 0.50 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.21 1.52 5.69 -52.49 -0.30 1.22 16 32 H 0.08 0.69 6.66 -51.93 -0.35 0.34 16 33 H 0.10 0.80 3.59 -51.93 -0.19 0.62 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.64 4.98 -51.93 -0.26 0.38 16 37 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 38 H 0.05 0.96 7.93 -51.93 -0.41 0.55 16 39 H 0.02 0.35 6.74 -51.93 -0.35 0.00 16 40 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.09 2.27 6.04 -51.93 -0.31 1.95 16 42 H 0.02 0.44 6.67 -51.93 -0.35 0.10 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.09 1.55 4.99 -51.93 -0.26 1.29 16 47 H 0.09 1.18 7.00 -51.94 -0.36 0.81 16 48 H 0.08 0.93 6.74 -51.93 -0.35 0.58 16 LS Contribution 356.62 15.07 5.37 5.37 Total: -1.00 -31.44 356.62 -6.86 -38.31 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.76 Total: -0.04 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -1.03 Total: 0.10 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: 0.50 Total: -52.30 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: 0.08 Total: -7.66 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.44 -6.86 -38.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957544032.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.180 kcal (2) G-P(sol) polarization free energy of solvation -31.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds