Wall clock time and date at job start Tue Mar 31 2020 18:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28712 * 126.03233 * 2 1 4 4 N 1.28520 * 110.63804 * 179.97438 * 3 2 1 5 5 C 1.33319 * 109.43802 * 359.97438 * 4 3 2 6 6 C 1.37011 * 106.37191 * 359.77550 * 5 4 3 7 7 C 1.47228 * 127.18974 * 180.23879 * 6 5 4 8 8 O 1.21622 * 120.00101 * 199.92237 * 7 6 5 9 9 N 1.34781 * 120.00112 * 19.92544 * 7 6 5 10 10 C 1.46923 * 120.64067 * 6.33358 * 9 7 6 11 11 C 1.53624 * 108.54048 * 126.32723 * 10 9 7 12 12 C 1.53045 * 109.26387 * 54.86346 * 11 10 9 13 13 C 1.53028 * 109.43720 * 58.57312 * 12 11 10 14 14 C 1.53185 * 109.33745 * 181.23125 * 13 12 11 15 15 N 1.46927 * 108.78181 * 305.37879 * 14 13 12 16 16 C 1.36939 * 120.64483 * 233.61219 * 15 14 13 17 17 H 1.08000 * 119.99778 * 30.88051 * 16 15 14 18 18 C 1.38816 * 120.00168 * 210.87950 * 16 15 14 19 19 N 1.31618 * 119.99898 * 10.08324 * 18 16 15 20 20 Si 1.86797 * 119.99778 * 190.08262 * 18 16 15 21 21 H 1.48502 * 109.46987 * 89.99960 * 20 18 16 22 22 H 1.48499 * 109.46878 * 209.99834 * 20 18 16 23 23 H 1.48500 * 109.47211 * 329.99727 * 20 18 16 24 24 C 1.46925 * 118.71466 * 53.63433 * 15 14 13 25 25 C 1.53039 * 109.39470 * 178.60147 * 12 11 10 26 26 C 1.53034 * 109.54472 * 298.56962 * 12 11 10 27 27 C 1.46929 * 120.64284 * 186.61121 * 9 7 6 28 28 H 1.09004 * 109.46927 * 85.57517 * 1 2 3 29 29 H 1.08994 * 109.47210 * 205.57329 * 1 2 3 30 30 H 1.09001 * 109.47046 * 325.57570 * 1 2 3 31 31 H 1.08000 * 126.81565 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.58932 * 246.15473 * 10 9 7 33 33 H 1.09001 * 109.59001 * 6.58628 * 10 9 7 34 34 H 1.08999 * 109.62458 * 294.86692 * 11 10 9 35 35 H 1.09006 * 109.42916 * 174.74230 * 11 10 9 36 36 H 1.09004 * 109.49788 * 301.19655 * 13 12 11 37 37 H 1.09008 * 109.49498 * 61.27432 * 13 12 11 38 38 H 1.09000 * 109.58900 * 185.58576 * 14 13 12 39 39 H 1.09002 * 109.69774 * 65.23621 * 14 13 12 40 40 H 0.96996 * 119.99878 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.59107 * 186.57159 * 24 15 14 42 42 H 1.09007 * 109.70738 * 66.21666 * 24 15 14 43 43 H 1.08998 * 109.49441 * 298.69525 * 25 12 11 44 44 H 1.09000 * 109.49328 * 58.77625 * 25 12 11 45 45 H 1.09006 * 109.49186 * 301.33279 * 26 12 11 46 46 H 1.08996 * 109.48907 * 181.25831 * 26 12 11 47 47 H 1.08989 * 109.58798 * 353.40738 * 27 9 7 48 48 H 1.09006 * 109.58220 * 113.69010 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2221 1.0409 0.0000 4 7 3.4612 0.6997 0.0005 5 6 3.5552 -0.6302 0.0015 6 6 2.2712 -1.1081 0.0067 7 6 1.8463 -2.5177 0.0145 8 8 0.7219 -2.8159 -0.3405 9 7 2.7033 -3.4777 0.4150 10 6 4.0142 -3.1244 0.9766 11 6 4.1630 -3.8139 2.3413 12 6 3.9364 -5.3183 2.1743 13 6 4.9478 -5.8773 1.1712 14 6 4.6992 -7.3770 0.9825 15 7 4.7298 -8.0307 2.2980 16 6 5.5526 -9.1013 2.5264 17 1 6.4925 -9.1818 2.0006 18 6 5.1786 -10.0829 3.4339 19 7 3.9576 -10.0943 3.9251 20 14 6.4084 -11.3877 3.9579 21 1 7.1518 -10.9154 5.1536 22 1 5.6875 -12.6435 4.2873 23 1 7.3635 -11.6413 2.8495 24 6 3.8601 -7.5139 3.3635 25 6 4.1182 -6.0127 3.5259 26 6 2.5169 -5.5682 1.6599 27 6 2.3473 -4.8980 0.2930 28 1 -0.3633 0.0793 -1.0246 29 1 -0.3633 -0.9269 0.4436 30 1 -0.3633 0.8477 0.5810 31 1 4.4633 -1.2148 0.0017 32 1 4.8029 -3.4634 0.3050 33 1 4.0784 -2.0436 1.1028 34 1 3.4277 -3.4104 3.0375 35 1 5.1664 -3.6380 2.7290 36 1 4.8325 -5.3663 0.2152 37 1 5.9586 -5.7207 1.5481 38 1 5.4772 -7.7992 0.3465 39 1 3.7247 -7.5325 0.5197 40 1 3.6964 -10.7800 4.5594 41 1 4.0843 -8.0265 4.2990 42 1 2.8158 -7.6785 3.0978 43 1 5.1363 -5.8550 3.8818 44 1 3.4125 -5.5981 4.2457 45 1 1.7964 -5.1492 2.3625 46 1 2.3490 -6.6407 1.5626 47 1 1.3109 -4.9882 -0.0321 48 1 3.0017 -5.3774 -0.4351 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957544032.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:28 Heat of formation + Delta-G solvation = 85.547769 kcal Electronic energy + Delta-G solvation = -30143.206246 eV Core-core repulsion = 26235.899465 eV Total energy + Delta-G solvation = -3907.306780 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.46477 -41.66389 -39.96122 -37.53219 -35.79340 -35.14661 -33.33751 -32.97746 -31.64922 -31.40569 -29.58274 -28.98073 -26.91531 -25.59686 -24.79901 -24.22111 -23.38686 -23.13744 -22.10105 -20.85663 -19.36925 -18.73202 -18.14895 -17.98940 -17.85940 -17.15724 -16.83723 -16.27613 -15.78781 -15.60999 -15.55912 -15.18587 -15.06813 -14.82598 -14.73308 -14.51194 -14.29942 -14.11069 -13.86797 -13.51637 -13.13393 -12.99585 -12.92948 -12.75132 -12.72776 -12.53401 -12.28193 -12.21186 -12.11923 -12.07911 -11.73708 -11.63001 -11.32916 -11.27835 -11.06174 -11.04230 -10.88080 -10.49983 -10.46678 -9.68938 -8.53613 -7.81815 -5.31832 -0.17718 0.99621 1.16451 1.47424 1.48204 1.56753 1.82450 1.91517 2.52832 3.08851 3.32564 3.33016 3.67221 3.76890 3.80322 3.83005 3.86910 3.89854 4.14197 4.19700 4.28311 4.34685 4.47940 4.51117 4.54779 4.59364 4.66648 4.72685 4.77955 4.81767 4.85333 4.87344 4.91407 5.05406 5.10452 5.11242 5.21911 5.27464 5.33700 5.35845 5.46851 5.53239 5.60016 5.64704 5.72442 5.90595 6.18366 6.46391 6.80767 7.20697 7.21675 7.94177 8.44743 9.22410 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.031938 B = 0.002664 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.482877 B =10506.430177 C =10805.023677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.253 5.253 3 N -0.078 5.078 4 N -0.297 5.297 5 C 0.000 4.000 6 C -0.075 4.075 7 C 0.595 3.405 8 O -0.567 6.567 9 N -0.581 5.581 10 C 0.076 3.924 11 C -0.116 4.116 12 C -0.042 4.042 13 C -0.112 4.112 14 C 0.139 3.861 15 N -0.609 5.609 16 C -0.256 4.256 17 H 0.064 0.936 18 C -0.052 4.052 19 N -0.937 5.937 20 Si 0.964 3.036 21 H -0.286 1.286 22 H -0.297 1.297 23 H -0.269 1.269 24 C 0.179 3.821 25 C -0.119 4.119 26 C -0.116 4.116 27 C 0.123 3.877 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.125 0.875 31 H 0.241 0.759 32 H 0.105 0.895 33 H 0.119 0.881 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.046 0.954 39 H 0.017 0.983 40 H 0.247 0.753 41 H 0.046 0.954 42 H -0.003 1.003 43 H 0.051 0.949 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.063 0.937 47 H 0.082 0.918 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.126 19.859 -7.441 21.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.050 5.050 3 N -0.058 5.058 4 N -0.159 5.159 5 C -0.161 4.161 6 C -0.210 4.210 7 C 0.381 3.619 8 O -0.446 6.446 9 N -0.312 5.312 10 C -0.045 4.045 11 C -0.154 4.154 12 C -0.042 4.042 13 C -0.151 4.151 14 C 0.014 3.986 15 N -0.333 5.333 16 C -0.387 4.387 17 H 0.082 0.918 18 C -0.247 4.247 19 N -0.584 5.584 20 Si 0.793 3.207 21 H -0.213 1.213 22 H -0.224 1.224 23 H -0.193 1.193 24 C 0.054 3.946 25 C -0.158 4.158 26 C -0.154 4.154 27 C 0.001 3.999 28 H 0.129 0.871 29 H 0.123 0.877 30 H 0.144 0.856 31 H 0.257 0.743 32 H 0.123 0.877 33 H 0.136 0.864 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.035 0.965 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.015 0.985 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.100 0.900 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.782 21.127 -7.542 22.749 hybrid contribution 0.025 -2.531 0.711 2.629 sum -3.757 18.596 -6.831 20.164 Atomic orbital electron populations 1.22769 0.69794 1.07228 1.07005 1.47944 1.10904 1.03075 1.43125 1.78239 0.97084 1.12011 1.18498 1.74922 1.09356 1.13707 1.17901 1.24878 0.97826 0.91224 1.02125 1.21961 0.92172 0.90510 1.16339 1.16788 0.84337 0.82974 0.77801 1.90797 1.20266 1.82953 1.50627 1.47813 1.17692 1.05790 1.59893 1.22961 0.83565 1.02576 0.95400 1.22016 1.03317 0.93359 0.96709 1.20337 0.94275 0.94784 0.94839 1.22017 0.98463 0.95564 0.99025 1.21108 0.97879 0.92816 0.86819 1.44244 1.47585 1.33823 1.07630 1.19514 0.98273 0.98486 1.22414 0.91787 1.25854 0.97252 0.99480 1.02106 1.70137 1.18150 1.35847 1.34224 0.85307 0.78534 0.78527 0.78324 1.21336 1.22419 1.19331 1.20556 0.91076 0.90713 0.92274 1.22048 1.00394 0.96657 0.96690 1.21890 0.96885 1.00454 0.96213 1.21666 1.02259 0.78361 0.97610 0.87116 0.87651 0.85638 0.74292 0.87657 0.86390 0.92019 0.88907 0.89604 0.92215 0.93522 0.96516 0.94359 0.93600 0.98496 0.93046 0.92631 0.92660 0.91882 0.89978 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.88 10.92 127.77 1.40 2.27 16 2 N -0.25 -4.88 3.79 -356.78 -1.35 -6.24 16 3 N -0.08 -1.74 13.14 37.02 0.49 -1.25 16 4 N -0.30 -6.62 12.35 -57.50 -0.71 -7.33 16 5 C 0.00 -0.01 9.79 84.18 0.82 0.82 16 6 C -0.07 -1.47 6.65 40.41 0.27 -1.20 16 7 C 0.59 13.03 7.57 86.60 0.66 13.68 16 8 O -0.57 -15.42 14.66 -4.10 -0.06 -15.48 16 9 N -0.58 -11.25 2.97 -822.18 -2.44 -13.69 16 10 C 0.08 1.08 4.81 86.51 0.42 1.50 16 11 C -0.12 -2.16 4.92 30.82 0.15 -2.01 16 12 C -0.04 -1.10 0.51 -52.13 -0.03 -1.13 16 13 C -0.11 -3.01 4.14 30.67 0.13 -2.89 16 14 C 0.14 5.18 6.04 86.36 0.52 5.70 16 15 N -0.61 -29.00 2.99 -699.10 -2.09 -31.09 16 16 C -0.26 -13.71 9.59 84.03 0.81 -12.91 16 17 H 0.06 3.34 7.85 -2.91 -0.02 3.32 16 18 C -0.05 -2.86 5.07 84.86 0.43 -2.43 16 19 N -0.94 -54.89 10.98 21.65 0.24 -54.66 16 20 Si 0.96 44.43 29.57 68.60 2.03 46.46 16 21 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 24 C 0.18 8.27 4.79 86.36 0.41 8.68 16 25 C -0.12 -4.07 4.90 30.67 0.15 -3.92 16 26 C -0.12 -3.16 4.15 30.67 0.13 -3.04 16 27 C 0.12 2.77 5.97 86.36 0.52 3.29 16 28 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.10 1.47 6.72 -2.39 -0.02 1.46 16 30 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.24 2.28 5.69 -2.91 -0.02 2.26 16 32 H 0.11 1.12 6.66 -2.39 -0.02 1.10 16 33 H 0.12 1.33 3.59 -2.39 -0.01 1.32 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.09 1.75 4.98 -2.39 -0.01 1.74 16 37 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.05 1.74 7.93 -2.39 -0.02 1.72 16 39 H 0.02 0.64 6.74 -2.39 -0.02 0.62 16 40 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 41 H 0.05 2.48 6.04 -2.38 -0.01 2.47 16 42 H 0.00 -0.15 6.67 -2.38 -0.02 -0.16 16 43 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 46 H 0.06 2.13 4.99 -2.39 -0.01 2.11 16 47 H 0.08 2.04 7.00 -2.39 -0.02 2.03 16 48 H 0.09 1.84 6.74 -2.38 -0.02 1.83 16 Total: -1.00 -70.73 356.62 3.87 -66.86 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.99 Total: 9.98 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 6.78 Total: 6.43 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -5.87 Total: -114.25 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.06 Total: -15.48 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -70.73 3.87 -66.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957544032.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.406 kcal (2) G-P(sol) polarization free energy of solvation -70.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds