Wall clock time and date at job start Tue Mar 31 2020 18:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28709 * 126.04077 * 2 1 4 4 N 1.28521 * 110.63891 * 180.26298 * 3 2 1 5 5 C 1.33321 * 109.43655 * 359.75403 * 4 3 2 6 6 C 1.36999 * 106.37381 * 359.97438 * 5 4 3 7 7 C 1.47236 * 127.19054 * 179.97438 * 6 5 4 8 8 O 1.21610 * 120.00124 * 152.71253 * 7 6 5 9 9 N 1.34782 * 119.99758 * 332.71182 * 7 6 5 10 10 C 1.46924 * 120.63127 * 351.38893 * 9 7 6 11 11 C 1.53198 * 108.77400 * 233.63012 * 10 9 7 12 12 C 1.53039 * 109.30872 * 305.36294 * 11 10 9 13 13 C 1.53042 * 109.54036 * 61.36777 * 12 11 10 14 14 H 1.08999 * 109.52088 * 58.59680 * 13 12 11 15 15 C 1.52991 * 109.49723 * 178.68293 * 13 12 11 16 16 H 1.09005 * 110.92183 * 62.28655 * 15 13 12 17 17 C 1.55159 * 111.00448 * 186.18854 * 15 13 12 18 18 C 1.54325 * 102.94464 * 153.57634 * 17 15 13 19 19 N 1.47290 * 107.30538 * 337.81383 * 18 17 15 20 20 C 1.36938 * 125.79005 * 178.92488 * 19 18 17 21 21 H 1.08002 * 119.99597 * 180.02562 * 20 19 18 22 22 C 1.38804 * 120.00269 * 0.02562 * 20 19 18 23 23 N 1.31623 * 120.00091 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99930 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46974 * 90.00236 * 24 22 20 26 26 H 1.48505 * 109.47355 * 210.00122 * 24 22 20 27 27 H 1.48495 * 109.47399 * 330.00109 * 24 22 20 28 28 C 1.47420 * 108.55782 * 358.92954 * 19 18 17 29 29 C 1.46925 * 120.62812 * 171.40595 * 9 7 6 30 30 H 1.08994 * 109.47156 * 264.61494 * 1 2 3 31 31 H 1.09005 * 109.46426 * 24.61246 * 1 2 3 32 32 H 1.08996 * 109.47466 * 144.61065 * 1 2 3 33 33 H 1.08002 * 126.80888 * 179.97438 * 5 4 3 34 34 H 1.09007 * 109.58570 * 353.41256 * 10 9 7 35 35 H 1.08998 * 109.58650 * 113.69918 * 10 9 7 36 36 H 1.08990 * 109.49800 * 65.31536 * 11 10 9 37 37 H 1.09000 * 109.49498 * 185.41238 * 11 10 9 38 38 H 1.09008 * 109.46199 * 301.34626 * 12 11 10 39 39 H 1.09004 * 109.45695 * 181.38895 * 12 11 10 40 40 H 1.09000 * 110.72284 * 271.94229 * 17 15 13 41 41 H 1.08998 * 110.72065 * 35.20656 * 17 15 13 42 42 H 1.08996 * 109.88379 * 97.22843 * 18 17 15 43 43 H 1.09008 * 109.87934 * 218.23505 * 18 17 15 44 44 H 0.96998 * 119.99798 * 180.02562 * 23 22 20 45 45 H 1.09007 * 110.37118 * 265.26017 * 28 19 18 46 46 H 1.09000 * 110.36764 * 143.04712 * 28 19 18 47 47 H 1.09001 * 109.58548 * 6.58703 * 29 9 7 48 48 H 1.08999 * 109.58663 * 246.16184 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2223 1.0407 0.0000 4 7 3.4613 0.6994 -0.0055 5 6 3.5551 -0.6305 -0.0041 6 6 2.2712 -1.1082 0.0034 7 6 1.8461 -2.5179 0.0072 8 8 0.7770 -2.8293 0.4962 9 7 2.6418 -3.4631 -0.5313 10 6 3.8424 -3.0875 -1.2902 11 6 3.7889 -3.7634 -2.6640 12 6 3.6086 -5.2718 -2.4791 13 6 2.2882 -5.5445 -1.7548 14 1 1.4631 -5.1285 -2.3329 15 6 2.0932 -7.0540 -1.5997 16 1 2.8848 -7.4880 -0.9887 17 6 0.6950 -7.3764 -1.0093 18 6 0.4116 -8.7950 -1.5467 19 7 1.2501 -8.9863 -2.7424 20 6 1.3107 -10.1222 -3.5047 21 1 1.9616 -10.1606 -4.3657 22 6 0.5357 -11.2243 -3.1708 23 7 -0.2578 -11.1774 -2.1218 24 14 0.6179 -12.7736 -4.2112 25 1 1.6771 -13.6698 -3.6816 26 1 -0.6915 -13.4724 -4.1629 27 1 0.9335 -12.4104 -5.6160 28 6 2.0147 -7.7489 -2.9820 29 6 2.3247 -4.8888 -0.3708 30 1 -0.3633 -0.0964 1.0231 31 1 -0.3632 0.9344 -0.4280 32 1 -0.3634 -0.8377 -0.5951 33 1 4.4632 -1.2151 -0.0080 34 1 3.8711 -2.0051 -1.4164 35 1 4.7320 -3.4165 -0.7531 36 1 2.9500 -3.3638 -3.2336 37 1 4.7181 -3.5711 -3.2004 38 1 4.4351 -5.6667 -1.8882 39 1 3.5949 -5.7582 -3.4545 40 1 0.7270 -7.3760 0.0802 41 1 -0.0501 -6.6696 -1.3745 42 1 0.6701 -9.5363 -0.7906 43 1 -0.6418 -8.8876 -1.8113 44 1 -0.7991 -11.9477 -1.8883 45 1 1.4929 -7.1128 -3.6971 46 1 3.0149 -7.9852 -3.3451 47 1 1.3521 -4.9950 0.1096 48 1 3.0904 -5.3669 0.2401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961152792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:10 Heat of formation + Delta-G solvation = 95.395234 kcal Electronic energy + Delta-G solvation = -29302.767187 eV Core-core repulsion = 25395.887424 eV Total energy + Delta-G solvation = -3906.879762 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.71165 -40.43775 -38.39887 -36.87487 -35.04834 -33.93296 -32.46750 -32.00117 -30.90437 -28.96884 -28.49223 -27.34065 -26.08788 -24.70021 -23.59225 -23.18955 -22.49182 -21.07549 -19.87934 -19.70744 -19.54816 -17.76626 -17.45180 -17.11937 -16.80429 -16.23790 -15.64335 -15.14867 -14.73443 -14.61472 -14.37242 -14.21281 -13.85746 -13.78553 -13.65524 -13.39239 -13.24133 -13.13949 -12.49739 -12.34582 -12.20565 -11.95600 -11.81227 -11.55265 -11.32207 -11.08703 -11.07723 -10.88473 -10.83652 -10.67055 -10.57421 -10.44535 -10.10916 -10.00125 -9.83343 -9.78041 -9.67482 -9.61156 -8.91302 -8.58929 -6.80742 -5.69772 -3.02971 0.59659 1.66121 1.92400 2.54462 2.66348 3.40002 3.44862 3.46994 3.79674 4.01082 4.32299 4.45613 4.51046 4.51590 4.65045 4.69824 4.74080 4.86252 4.97554 5.04455 5.10104 5.19548 5.31621 5.46668 5.49113 5.50899 5.52121 5.60498 5.65546 5.69230 5.87622 5.90013 5.94512 5.97418 5.99827 6.16713 6.23639 6.33883 6.41697 6.57262 6.58880 6.74281 6.94356 6.98084 7.57979 7.62831 7.66039 7.84829 7.95951 8.27926 9.23596 9.84511 10.51404 11.42128 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.028226 B = 0.002384 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.771985 B =11742.834652 C =12348.478014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.256 5.256 3 N -0.061 5.061 4 N -0.273 5.273 5 C -0.006 4.006 6 C -0.063 4.063 7 C 0.592 3.408 8 O -0.530 6.530 9 N -0.591 5.591 10 C 0.087 3.913 11 C -0.134 4.134 12 C -0.118 4.118 13 C -0.086 4.086 14 H 0.074 0.926 15 C -0.095 4.095 16 H 0.075 0.925 17 C -0.140 4.140 18 C 0.177 3.823 19 N -0.607 5.607 20 C -0.227 4.227 21 H 0.077 0.923 22 C -0.010 4.010 23 N -0.922 5.922 24 Si 0.911 3.089 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.145 3.855 29 C 0.119 3.881 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.203 0.797 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.044 0.956 43 H 0.040 0.960 44 H 0.252 0.748 45 H 0.015 0.985 46 H 0.036 0.964 47 H 0.098 0.902 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.108 21.589 3.940 23.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.053 5.053 3 N -0.042 5.042 4 N -0.136 5.136 5 C -0.166 4.166 6 C -0.198 4.198 7 C 0.377 3.623 8 O -0.406 6.406 9 N -0.324 5.324 10 C -0.035 4.035 11 C -0.172 4.172 12 C -0.155 4.155 13 C -0.106 4.106 14 H 0.093 0.907 15 C -0.115 4.115 16 H 0.093 0.907 17 C -0.179 4.179 18 C 0.052 3.948 19 N -0.333 5.333 20 C -0.355 4.355 21 H 0.095 0.905 22 C -0.206 4.206 23 N -0.570 5.570 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.019 3.981 29 C -0.002 4.002 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.220 0.780 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.033 0.967 46 H 0.054 0.946 47 H 0.117 0.883 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.408 22.743 4.194 23.998 hybrid contribution -0.136 -2.051 -0.517 2.120 sum 6.271 20.692 3.677 21.932 Atomic orbital electron populations 1.22466 0.71291 1.06128 1.06077 1.47666 1.09924 1.03433 1.44249 1.78285 0.96699 1.11440 1.17807 1.74922 1.09182 1.12460 1.16995 1.24082 0.96827 0.91836 1.03870 1.22022 0.91701 0.90879 1.15186 1.16728 0.83972 0.82573 0.79021 1.90850 1.21407 1.81815 1.46495 1.47835 1.25824 1.06704 1.51992 1.22330 0.87176 1.01171 0.92822 1.21923 1.02753 0.96669 0.95823 1.21629 0.97484 0.94687 1.01720 1.21471 0.98128 0.95897 0.95077 0.90735 1.22317 0.98189 0.91907 0.99106 0.90653 1.22931 0.95512 1.00160 0.99258 1.21164 0.95052 0.89830 0.88714 1.44547 1.47937 1.10423 1.30429 1.19047 1.20719 0.89480 1.06286 0.90531 1.24803 0.99187 0.98292 0.98303 1.69972 1.29789 1.29781 1.27435 0.86132 0.76932 0.83267 0.79510 1.21631 1.21704 1.20741 1.21507 0.94922 0.88489 0.93192 1.21876 1.03187 0.77099 0.98055 0.88157 0.87609 0.87660 0.78049 0.88899 0.90358 0.91519 0.90347 0.91531 0.90743 0.92333 0.92576 0.93740 0.94168 0.93802 0.96697 0.94582 0.88340 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.53 10.66 59.85 0.64 1.17 16 2 N -0.26 -2.55 3.79 -64.12 -0.24 -2.79 16 3 N -0.06 -0.70 13.14 60.35 0.79 0.09 16 4 N -0.27 -3.11 12.35 30.47 0.38 -2.74 16 5 C -0.01 -0.05 9.66 -17.35 -0.17 -0.22 16 6 C -0.06 -0.64 6.42 -82.33 -0.53 -1.17 16 7 C 0.59 6.70 7.48 -12.60 -0.09 6.61 16 8 O -0.53 -7.47 15.31 5.27 0.08 -7.39 16 9 N -0.59 -5.81 2.97 -174.10 -0.52 -6.33 16 10 C 0.09 0.61 5.18 -3.71 -0.02 0.59 16 11 C -0.13 -1.03 6.08 -26.61 -0.16 -1.19 16 12 C -0.12 -1.17 4.99 -26.69 -0.13 -1.30 16 13 C -0.09 -1.04 1.84 -90.50 -0.17 -1.21 16 14 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 15 C -0.10 -1.51 2.56 -88.47 -0.23 -1.73 16 16 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 17 C -0.14 -2.54 5.70 -24.89 -0.14 -2.68 16 18 C 0.18 4.28 5.38 -2.92 -0.02 4.27 16 19 N -0.61 -15.40 3.40 -169.86 -0.58 -15.98 16 20 C -0.23 -6.32 10.28 -15.06 -0.15 -6.48 16 21 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 22 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 23 N -0.92 -27.26 10.34 55.49 0.57 -26.69 16 24 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 C 0.15 2.86 5.66 -2.53 -0.01 2.85 16 29 C 0.12 1.33 5.49 -3.71 -0.02 1.31 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.10 0.71 7.57 -51.93 -0.39 0.32 16 33 H 0.20 1.15 6.45 -52.49 -0.34 0.81 16 34 H 0.09 0.58 4.33 -51.92 -0.22 0.36 16 35 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 39 H 0.07 0.81 7.21 -51.93 -0.37 0.44 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.99 8.01 -51.93 -0.42 0.57 16 42 H 0.04 1.19 7.39 -51.93 -0.38 0.81 16 43 H 0.04 1.09 7.51 -51.92 -0.39 0.70 16 44 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.02 0.30 8.04 -51.92 -0.42 -0.11 16 46 H 0.04 0.69 8.01 -51.93 -0.42 0.27 16 47 H 0.10 1.28 6.56 -51.93 -0.34 0.94 16 48 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 373.66 15.07 5.63 5.63 Total: -1.00 -34.11 373.66 -7.68 -41.79 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -7.47 Total: -3.12 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -1.30 Total: 0.44 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.40 Total: -54.43 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: 0.08 Total: -7.39 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.11 -7.68 -41.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961152792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.181 kcal (2) G-P(sol) polarization free energy of solvation -34.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds